Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:47:18 (345156): wrapper (7.7.26015): starting
21:47:18 (345156): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 21:47:18] Arguments: --nthreads 6
[2025-10-14 21:47:18] Threads: 6
[2025-10-14 21:47:18] Checking for CVMFS
[2025-10-14 21:47:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 21:47:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 21:47:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 21:47:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 21:47:19] 2.13.1.0 3910062 988 66276 151697 0 188 30855724 52428800 913 130560 0 1916216 99.995 38547 120 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-14 21:47:19] CVMFS is ok
[2025-10-14 21:47:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 21:47:19] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-14 21:47:19] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-14 21:47:19] Further information can be found at the LHC@home message board.
[2025-10-14 21:47:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 21:47:19] Checking for apptainer binary...
[2025-10-14 21:47:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 21:47:19] Running /usr/bin/apptainer --version
[2025-10-14 21:47:19] apptainer version 1.4.1-1.el9
[2025-10-14 21:47:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 21:47:19] Atto003
[2025-10-14 21:47:19] apptainer works
[2025-10-14 21:47:19] Set ATHENA_PROC_NUMBER=6
[2025-10-14 21:47:19] Set ATHENA_CORE_NUMBER=6
[2025-10-14 21:47:19] Starting ATLAS job with PandaID=6837352877
[2025-10-14 21:47:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 23:07:38]  *** The last 200 lines of the pilot log: ***
[2025-10-14 23:07:38] 2025-10-14 14:06:22,721 | INFO     | time since job start (4735s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:24,696 | INFO     | monitor loop #370: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:24,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:24,725 | INFO     | time since job start (4737s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:26,731 | INFO     | time since job start (4739s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:27,199 | INFO     | monitor loop #371: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:27,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:27,797 | INFO     | PID=348945 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 23:07:38] 2025-10-14 14:06:27,797 | INFO     | .. there are 2 such processes running
[2025-10-14 23:07:38] 2025-10-14 14:06:28,797 | INFO     | time since job start (4741s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:29,702 | INFO     | monitor loop #372: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:29,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:30,802 | INFO     | time since job start (4743s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:32,205 | INFO     | monitor loop #373: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:32,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:32,808 | INFO     | time since job start (4745s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:34,708 | INFO     | monitor loop #374: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:34,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:34,809 | INFO     | time since job start (4747s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:36,814 | INFO     | time since job start (4749s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:37,210 | INFO     | monitor loop #375: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:37,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:38,820 | INFO     | time since job start (4751s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:39,713 | INFO     | monitor loop #376: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:39,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:40,825 | INFO     | time since job start (4753s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:42,215 | INFO     | monitor loop #377: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:42,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:42,830 | INFO     | time since job start (4755s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:44,718 | INFO     | monitor loop #378: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:44,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:44,836 | INFO     | time since job start (4757s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:46,841 | INFO     | time since job start (4759s) is within the limit (172800.0s)
[2025-10-14 23:07:38] 2025-10-14 14:06:47,221 | INFO     | monitor loop #379: job 0:6837352877 is in state 'finished'
[2025-10-14 23:07:38] 2025-10-14 14:06:47,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,141 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 23:07:38] 2025-10-14 14:06:48,143 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3899.8348125
[2025-10-14 23:07:38] 2025-10-14 14:06:48,145 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6837352877/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,146 | INFO     | extracted standard info from prmon json
[2025-10-14 23:07:38] 2025-10-14 14:06:48,146 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 23:07:38] 2025-10-14 14:06:48,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 23:07:38] 2025-10-14 14:06:48,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 23:07:38] 2025-10-14 14:06:48,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | fitting pss+swap vs Time
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | sum of square deviations: 106336877.5
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | sum of deviations: -4957098571.000001
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | mean x: 1760448474.5
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | mean y: 2514041.285714286
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | -- intersect: 82069213971.07332
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | intersect: 82069213971.07332
[2025-10-14 23:07:38] 2025-10-14 14:06:48,148 | INFO     | chi2: 0.045922622421627465
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | -- intersect: 82069213971.07332
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | current memory leak: -46.62 B/s (using 70 data points, chi2=0.05)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | could have reported an average CPU frequency of 3894 MHz (6 samples)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | ..............................
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . Timing measurements:
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . get job = 0 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . initial setup = 4 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . payload setup = 2 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . stage-in = 0 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . payload execution = 4692 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,149 | INFO     | . stage-out = 0 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,150 | INFO     | . log creation = 0 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,150 | INFO     | ..............................
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | 
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | job summary report
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | --------------------------------------------------
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | PanDA job id: 6837352877
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | task id: 46676269
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | errors: (none)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,187 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | pilot state: finished 
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | transexitcode: 0
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | exeerrorcode: 0
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | exeerrordiag: 
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | exitcode: 0
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | exitmsg: OK
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | cpuconsumptiontime: 25796 s
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | nevents: 400
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | neventsw: 0
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | pid: 355693
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | pgrp: 355693
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | corecount: 6
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | event service: False
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | sizes: {0: 2348855, 2: 2349117, 11: 2349145, 4698: 2375426, 4699: 2384479, 4749: 2384617}
[2025-10-14 23:07:38] 2025-10-14 14:06:48,188 | INFO     | --------------------------------------------------
[2025-10-14 23:07:38] 2025-10-14 14:06:48,189 | INFO     | 
[2025-10-14 23:07:38] 2025-10-14 14:06:48,189 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-14 23:07:38] 2025-10-14 14:06:48,197 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,197 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,197 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,199 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 23:07:38] 2025-10-14 14:06:48,199 | INFO     | job 6837352877 has completed (purged errors)
[2025-10-14 23:07:38] 2025-10-14 14:06:48,199 | INFO     | overall cleanup function is called
[2025-10-14 23:07:38] 2025-10-14 14:06:49,205 | INFO     | --- collectZombieJob: --- 10, [355693]
[2025-10-14 23:07:38] 2025-10-14 14:06:49,205 | INFO     | zombie collector waiting for pid 355693
[2025-10-14 23:07:38] 2025-10-14 14:06:49,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 23:07:38] 2025-10-14 14:06:49,205 | INFO     | collected zombie processes
[2025-10-14 23:07:38] 2025-10-14 14:06:49,205 | INFO     | will attempt to kill all subprocesses of pid=355693
[2025-10-14 23:07:38] 2025-10-14 14:06:49,274 | INFO     | process IDs to be killed: [355693] (in reverse order)
[2025-10-14 23:07:38] 2025-10-14 14:06:49,292 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 23:07:38] 2025-10-14 14:06:49,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 23:07:38] 2025-10-14 14:06:49,294 | INFO     | did not find any defunct processes belonging to 355693
[2025-10-14 23:07:38] 2025-10-14 14:06:49,295 | INFO     | did not find any defunct processes belonging to 355693
[2025-10-14 23:07:38] 2025-10-14 14:06:49,295 | INFO     | ready for new job
[2025-10-14 23:07:38] 2025-10-14 14:06:49,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 23:07:38] 2025-10-14 14:06:49,295 | INFO     | ***************************************
[2025-10-14 23:07:38] 2025-10-14 14:06:49,295 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 23:07:38] 2025-10-14 14:06:49,296 | INFO     | ***************************************
[2025-10-14 23:07:38] 2025-10-14 14:06:49,296 | INFO     | 
[2025-10-14 23:07:38] 2025-10-14 14:06:49,296 | INFO     | architecture information:
[2025-10-14 23:07:38] 2025-10-14 14:06:49,296 | INFO     | executing command: cat /etc/os-release
[2025-10-14 23:07:38] 2025-10-14 14:06:49,301 | INFO     | cat /etc/os-release:
[2025-10-14 23:07:38] NAME="CentOS Linux"
[2025-10-14 23:07:38] VERSION="7 (Core)"
[2025-10-14 23:07:38] ID="centos"
[2025-10-14 23:07:38] ID_LIKE="rhel fedora"
[2025-10-14 23:07:38] VERSION_ID="7"
[2025-10-14 23:07:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 23:07:38] ANSI_COLOR="0;31"
[2025-10-14 23:07:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 23:07:38] HOME_URL="https://www.centos.org/"
[2025-10-14 23:07:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 23:07:38] 
[2025-10-14 23:07:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 23:07:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 23:07:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 23:07:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 23:07:38] 
[2025-10-14 23:07:38] 2025-10-14 14:06:49,301 | INFO     | ***************************************
[2025-10-14 23:07:38] 2025-10-14 14:06:49,804 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-14 23:07:38] 2025-10-14 14:06:49,810 | INFO     | sufficient remaining disk space (113360502784 B)
[2025-10-14 23:07:38] 2025-10-14 14:06:49,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 23:07:38] 2025-10-14 14:06:49,810 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 23:07:38] 2025-10-14 14:06:49,810 | INFO     | update_server=False
[2025-10-14 23:07:38] 2025-10-14 14:06:49,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 23:07:38] 2025-10-14 14:06:49,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 23:07:38] 2025-10-14 14:06:49,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 23:07:38] 2025-10-14 14:06:49,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 23:07:38] 2025-10-14 14:06:50,598 | INFO     | all job control threads have been joined
[2025-10-14 23:07:38] 2025-10-14 14:06:50,705 | INFO     | all data control threads have been joined
[2025-10-14 23:07:38] 2025-10-14 14:06:50,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 23:07:38] 2025-10-14 14:06:50,726 | INFO     | aborting loop
[2025-10-14 23:07:38] 2025-10-14 14:06:50,815 | INFO     | [job] queue monitor thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:50,816 | INFO     | [job] retrieve thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:50,821 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:50,893 | INFO     | all payload control threads have been joined
[2025-10-14 23:07:38] 2025-10-14 14:06:51,277 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,304 | INFO     | [data] copytool_in thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,603 | INFO     | [job] control thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,629 | INFO     | [payload] failed_post thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,710 | INFO     | [data] control thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,732 | INFO     | [job] job monitor thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,816 | INFO     | [data] copytool_out thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:51,898 | INFO     | [payload] control thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:52,069 | INFO     | [payload] validate_post thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:52,098 | INFO     | [job] validate thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:52,303 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:06:53,940 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:07:00,604 | INFO     | job.realtimelogging is not enabled
[2025-10-14 23:07:38] 2025-10-14 14:07:01,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 23:07:38] 2025-10-14 14:07:19,968 | INFO     | PID=348945 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 23:07:38] 2025-10-14 14:07:19,968 | INFO     | .. there are 2 such processes running
[2025-10-14 23:07:38] 2025-10-14 14:07:19,968 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 23:07:38] 2025-10-14 14:07:19,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 23:07:38] 2025-10-14 14:07:19,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 23:07:38] 2025-10-14 14:07:33,640 | INFO     | [monitor] cgroup control has ended
[2025-10-14 23:07:38] 2025-10-14 14:07:33,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139975104571200)>', '<ExcThread(monitor, started 139974259242752)>']
[2025-10-14 23:07:38] 2025-10-14 14:07:34,034 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 23:07:38] 2025-10-14 14:07:34,035 | INFO     | [monitor] control thread has ended
[2025-10-14 23:07:38] 2025-10-14 14:07:38,845 | INFO     | all workflow threads have been joined
[2025-10-14 23:07:38] 2025-10-14 14:07:38,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 23:07:38] 2025-10-14 14:07:38,845 | INFO     | traces error code: 0
[2025-10-14 23:07:38] 2025-10-14 14:07:38,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 23:07:38] 2025-10-14 14:07:38,890 [wrapper] ==== pilot stdout END ====
[2025-10-14 23:07:38] 2025-10-14 14:07:38,891 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 23:07:38] 2025-10-14 14:07:38,892 [wrapper] pilotpid: 348945
[2025-10-14 23:07:38] 2025-10-14 14:07:38,892 [wrapper] Pilot exit status: 0
[2025-10-14 23:07:38] 2025-10-14 14:07:38,896 [wrapper] pandaids: 6837352877
[2025-10-14 23:07:38] 2025-10-14 14:07:38,907 [wrapper] cleanup supervisor_pilot  394137 348946
[2025-10-14 23:07:38] 2025-10-14 14:07:38,908 [wrapper] Test setup, not cleaning
[2025-10-14 23:07:38] 2025-10-14 14:07:38,909 [wrapper] apfmon messages muted
[2025-10-14 23:07:38] 2025-10-14 14:07:38,910 [wrapper] ==== wrapper stdout END ====
[2025-10-14 23:07:38] 2025-10-14 14:07:38,911 [wrapper] ==== wrapper stderr END ====
[2025-10-14 23:07:38]  *** Error codes and diagnostics ***
[2025-10-14 23:07:38]     "exeErrorCode": 0,
[2025-10-14 23:07:38]     "exeErrorDiag": "",
[2025-10-14 23:07:38]     "pilotErrorCode": 0,
[2025-10-14 23:07:38]     "pilotErrorDiag": "",
[2025-10-14 23:07:38]  *** Listing of results directory ***
[2025-10-14 23:07:38] total 408568
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc      5112 Oct 10 01:23 queuedata.json
[2025-10-14 23:07:38] -rwx------. 1 boinc boinc     36292 Oct 10 01:23 runpilot2-wrapper.sh
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc    557409 Oct 10 01:23 pilot3.tar.gz
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc       100 Oct 14 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 23:07:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 21:47 run_atlas
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc       105 Oct 14 21:47 job.xml
[2025-10-14 23:07:38] -rw-r--r--. 2 boinc boinc     15120 Oct 14 21:47 start_atlas.sh
[2025-10-14 23:07:38] drwxrwx--x. 2 boinc boinc        68 Oct 14 21:47 shared
[2025-10-14 23:07:38] -rw-r--r--. 2 boinc boinc    569675 Oct 14 21:47 input.tar.gz
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc      9345 Oct 14 21:47 init_data.xml
[2025-10-14 23:07:38] -rw-r--r--. 2 boinc boinc 219844988 Oct 14 21:47 EVNT.46676267._000919.pool.root.1
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc         0 Oct 14 21:47 boinc_lockfile
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc      2549 Oct 14 21:47 pandaJob.out
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc    973969 Oct 14 21:47 agis_schedconf.cvmfs.json
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc   1560580 Oct 14 21:47 agis_ddmendpoints.agis.ALL.json
[2025-10-14 23:07:38] drwx------. 5 boinc boinc      4096 Oct 14 21:47 pilot3
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc 192608008 Oct 14 23:05 HITS.46676269._022373.pool.root.1
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc       529 Oct 14 23:05 boinc_task_state.xml
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc      1020 Oct 14 23:05 memory_monitor_summary.json
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc    302979 Oct 14 23:05 log.46676269._022373.job.log.tgz.1
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc      7771 Oct 14 23:06 heartbeat.json
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc        27 Oct 14 23:07 wrapper_checkpoint.txt
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc      8192 Oct 14 23:07 boinc_mmap_file
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc        95 Oct 14 23:07 pilot_heartbeat.json
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc      4895 Oct 14 23:07 pilotlog.txt
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc    711792 Oct 14 23:07 log.46676269._022373.job.log.1
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc       357 Oct 14 23:07 output.list
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc       620 Oct 14 23:07 runtime_log
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc   1034240 Oct 14 23:07 result.tar.gz
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc       638 Oct 14 23:07 yNvNDmub8Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCkaNDmgsncom.diag
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc      8651 Oct 14 23:07 runtime_log.err
[2025-10-14 23:07:38] -rw-r--r--. 1 boinc boinc     22281 Oct 14 23:07 stderr.txt
[2025-10-14 23:07:38] HITS file was successfully produced:
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc 192608008 Oct 14 23:05 shared/HITS.pool.root.1
[2025-10-14 23:07:38]  *** Contents of shared directory: ***
[2025-10-14 23:07:38] total 404380
[2025-10-14 23:07:38] -rw-r--r--. 2 boinc boinc     15120 Oct 14 21:47 start_atlas.sh
[2025-10-14 23:07:38] -rw-r--r--. 2 boinc boinc    569675 Oct 14 21:47 input.tar.gz
[2025-10-14 23:07:38] -rw-r--r--. 2 boinc boinc 219844988 Oct 14 21:47 ATLAS.root_0
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc 192608008 Oct 14 23:05 HITS.pool.root.1
[2025-10-14 23:07:38] -rw-------. 1 boinc boinc   1034240 Oct 14 23:07 result.tar.gz
23:07:39 (345156): run_atlas exited; CPU time 25847.918060
23:07:39 (345156): called boinc_finish(0)

</stderr_txt>
]]>

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