Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:01:40 (31063): wrapper (7.7.26015): starting
09:01:40 (31063): wrapper: running run_atlas (--nthreads 8)
[2025-10-15 09:01:40] Arguments: --nthreads 8
[2025-10-15 09:01:40] Threads: 8
[2025-10-15 09:01:40] Checking for CVMFS
[2025-10-15 09:01:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 09:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 09:01:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 09:01:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 09:01:43] 2.11.2.0 2311 224543 139660 151725 3 171 21873706 25165825 4153 130560 0 138606415 99.869 76905655 3579 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-15 09:01:43] CVMFS is ok
[2025-10-15 09:01:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 09:01:43] Checking for apptainer binary...
[2025-10-15 09:01:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 09:01:43] Running /usr/bin/apptainer --version
[2025-10-15 09:01:43] apptainer version 1.3.2-1.el7
[2025-10-15 09:01:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 09:01:55] cg-vwn480.simple-grid.lan
[2025-10-15 09:01:55] apptainer works
[2025-10-15 09:01:55] Set ATHENA_PROC_NUMBER=8
[2025-10-15 09:01:55] Set ATHENA_CORE_NUMBER=8
[2025-10-15 09:01:55] Starting ATLAS job with PandaID=6833163837
[2025-10-15 09:01:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 11:59:21]  *** The last 200 lines of the pilot log: ***
[2025-10-15 11:59:21] 2025-10-15 09:58:38,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 11:59:21] 2025-10-15 09:58:38,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 11:59:21] 2025-10-15 09:58:38,901 | INFO     | fitting pss+swap vs Time
[2025-10-15 11:59:21] 2025-10-15 09:58:38,901 | INFO     | sum of square deviations: 1550429070.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,902 | INFO     | sum of deviations: 7542588024.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,902 | INFO     | mean x: 1760516997.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,902 | INFO     | mean y: 2460783.783625731
[2025-10-15 11:59:21] 2025-10-15 09:58:38,903 | INFO     | -- intersect: -8562171210.391151
[2025-10-15 11:59:21] 2025-10-15 09:58:38,903 | INFO     | intersect: -8562171210.391151
[2025-10-15 11:59:21] 2025-10-15 09:58:38,903 | INFO     | chi2: 2.2764991319863865
[2025-10-15 11:59:21] 2025-10-15 09:58:38,903 | INFO     | sum of square deviations: 1418361477.5
[2025-10-15 11:59:21] 2025-10-15 09:58:38,904 | INFO     | sum of deviations: 18394873117.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,904 | INFO     | mean x: 1760516844.5
[2025-10-15 11:59:21] 2025-10-15 09:58:38,904 | INFO     | mean y: 2473007.373493976
[2025-10-15 11:59:21] 2025-10-15 09:58:38,904 | INFO     | -- intersect: -22829847588.36034
[2025-10-15 11:59:21] 2025-10-15 09:58:38,904 | INFO     | intersect: -22829847588.36034
[2025-10-15 11:59:21] 2025-10-15 09:58:38,905 | INFO     | chi2: 1.5069502068392908
[2025-10-15 11:59:21] 2025-10-15 09:58:38,905 | INFO     | current chi2=1.5069502068392908 (change=33.804050892636035 %)
[2025-10-15 11:59:21] 2025-10-15 09:58:38,905 | INFO     | sum of square deviations: 1294014960.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | sum of deviations: 17786977007.000004
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | mean x: 1760516692.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | mean y: 2472261.4223602484
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | -- intersect: -24196838325.407104
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | intersect: -24196838325.407104
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | chi2: 1.5084930420108438
[2025-10-15 11:59:21] 2025-10-15 09:58:38,906 | INFO     | current chi2=1.5084930420108438 (change=-0.10238129730835194 %)
[2025-10-15 11:59:21] 2025-10-15 09:58:38,907 | INFO     | right removable region: 160
[2025-10-15 11:59:21] 2025-10-15 09:58:38,907 | INFO     | sum of square deviations: 1418361477.5
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | sum of deviations: -16952502740.999998
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | mean x: 1760517149.5
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | mean y: 2488655.6144578313
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | -- intersect: 21044495418.996998
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | intersect: 21044495418.996998
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | chi2: 0.8633152890535802
[2025-10-15 11:59:21] 2025-10-15 09:58:38,908 | INFO     | current chi2=0.8633152890535802 (change=62.077064870203394 %)
[2025-10-15 11:59:21] 2025-10-15 09:58:38,909 | INFO     | sum of square deviations: 1294014960.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,909 | INFO     | sum of deviations: -12816746051.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | mean x: 1760517302.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | mean y: 2483532.633540373
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | -- intersect: 17439765075.441727
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | intersect: 17439765075.441727
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | chi2: 0.8387158250693384
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | current chi2=0.8387158250693384 (change=2.8494183175198136 %)
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | left removable region: 20
[2025-10-15 11:59:21] 2025-10-15 09:58:38,910 | INFO     | sum of square deviations: 850825255.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,911 | INFO     | sum of deviations: 2018657811.0
[2025-10-15 11:59:21] 2025-10-15 09:58:38,911 | INFO     | mean x: 1760517271.5
[2025-10-15 11:59:21] 2025-10-15 09:58:38,911 | INFO     | mean y: 2491289.4714285713
[2025-10-15 11:59:21] 2025-10-15 09:58:38,911 | INFO     | -- intersect: -4174490905.907672
[2025-10-15 11:59:21] 2025-10-15 09:58:38,917 | INFO     | intersect: -4174490905.907672
[2025-10-15 11:59:21] 2025-10-15 09:58:38,917 | INFO     | chi2: 0.0001890776165995655
[2025-10-15 11:59:21] 2025-10-15 09:58:38,917 | INFO     | -- intersect: -4174490905.907672
[2025-10-15 11:59:21] 2025-10-15 09:58:38,917 | INFO     | current memory leak: 2.37 B/s (using 140 data points, chi2=0.00)
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | could have reported an average CPU frequency of 2249 MHz (9 samples)
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | ..............................
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . Timing measurements:
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . get job = 0 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . initial setup = 1 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . payload setup = 9 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . stage-in = 0 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . payload execution = 10412 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . stage-out = 2 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | . log creation = 1 s
[2025-10-15 11:59:21] 2025-10-15 09:58:38,922 | INFO     | ..............................
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | 
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | job summary report
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | --------------------------------------------------
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | PanDA job id: 6833163837
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | task id: 46376905
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | errors: (none)
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | pilot state: finished 
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | transexitcode: 0
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | exeerrorcode: 0
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | exeerrordiag: 
[2025-10-15 11:59:21] 2025-10-15 09:58:39,216 | INFO     | exitcode: 0
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | exitmsg: OK
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | cpuconsumptiontime: 39175 s
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | nevents: 400
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | neventsw: 0
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | pid: 9216
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | pgrp: 9216
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | corecount: 8
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | event service: False
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | sizes: {0: 2348834, 7: 2349096, 11: 2349124, 10426: 2377557, 10428: 2386557, 10429: 2386613, 10528: 2386999}
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | --------------------------------------------------
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | 
[2025-10-15 11:59:21] 2025-10-15 09:58:39,217 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-10-15 11:59:21] 2025-10-15 09:58:39,536 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,536 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,537 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | job 6833163837 has completed (purged errors)
[2025-10-15 11:59:21] 2025-10-15 09:58:39,538 | INFO     | overall cleanup function is called
[2025-10-15 11:59:21] 2025-10-15 09:58:40,546 | INFO     | --- collectZombieJob: --- 10, [9216]
[2025-10-15 11:59:21] 2025-10-15 09:58:40,547 | INFO     | zombie collector waiting for pid 9216
[2025-10-15 11:59:21] 2025-10-15 09:58:40,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 11:59:21] 2025-10-15 09:58:40,547 | INFO     | collected zombie processes
[2025-10-15 11:59:21] 2025-10-15 09:58:40,547 | INFO     | will attempt to kill all subprocesses of pid=9216
[2025-10-15 11:59:21] 2025-10-15 09:58:40,646 | INFO     | process IDs to be killed: [9216] (in reverse order)
[2025-10-15 11:59:21] 2025-10-15 09:58:40,797 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 11:59:21] 2025-10-15 09:58:40,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 11:59:21] 2025-10-15 09:58:40,800 | INFO     | did not find any defunct processes belonging to 9216
[2025-10-15 11:59:21] 2025-10-15 09:58:40,802 | INFO     | did not find any defunct processes belonging to 9216
[2025-10-15 11:59:21] 2025-10-15 09:58:40,803 | INFO     | ready for new job
[2025-10-15 11:59:21] 2025-10-15 09:58:40,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 11:59:21] 2025-10-15 09:58:40,804 | INFO     | ***************************************
[2025-10-15 11:59:21] 2025-10-15 09:58:40,804 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-15 11:59:21] 2025-10-15 09:58:40,805 | INFO     | ***************************************
[2025-10-15 11:59:21] 2025-10-15 09:58:40,805 | INFO     | 
[2025-10-15 11:59:21] 2025-10-15 09:58:40,805 | INFO     | pilot is running in a VM
[2025-10-15 11:59:21] 2025-10-15 09:58:40,805 | INFO     | architecture information:
[2025-10-15 11:59:21] 2025-10-15 09:58:40,810 | INFO     | executing command: cat /etc/os-release
[2025-10-15 11:59:21] 2025-10-15 09:58:40,920 | INFO     | cat /etc/os-release:
[2025-10-15 11:59:21] NAME="CentOS Linux"
[2025-10-15 11:59:21] VERSION="7 (Core)"
[2025-10-15 11:59:21] ID="centos"
[2025-10-15 11:59:21] ID_LIKE="rhel fedora"
[2025-10-15 11:59:21] VERSION_ID="7"
[2025-10-15 11:59:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 11:59:21] ANSI_COLOR="0;31"
[2025-10-15 11:59:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 11:59:21] HOME_URL="https://www.centos.org/"
[2025-10-15 11:59:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 11:59:21] 
[2025-10-15 11:59:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 11:59:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 11:59:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 11:59:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 11:59:21] 
[2025-10-15 11:59:21] 2025-10-15 09:58:40,920 | INFO     | ***************************************
[2025-10-15 11:59:21] 2025-10-15 09:58:41,424 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-10-15 11:59:21] 2025-10-15 09:58:41,489 | INFO     | sufficient remaining disk space (496737714176 B)
[2025-10-15 11:59:21] 2025-10-15 09:58:41,489 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 11:59:21] 2025-10-15 09:58:41,490 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 11:59:21] 2025-10-15 09:58:41,490 | INFO     | update_server=False
[2025-10-15 11:59:21] 2025-10-15 09:58:41,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 11:59:21] 2025-10-15 09:58:41,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 11:59:21] 2025-10-15 09:58:41,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 11:59:21] 2025-10-15 09:58:41,491 | INFO     | aborting loop
[2025-10-15 11:59:21] 2025-10-15 09:58:41,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 11:59:21] 2025-10-15 09:58:42,019 | INFO     | all data control threads have been joined
[2025-10-15 11:59:21] 2025-10-15 09:58:42,497 | INFO     | [job] job monitor thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:42,499 | INFO     | [job] retrieve thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:42,570 | INFO     | [job] validate thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:42,805 | INFO     | all payload control threads have been joined
[2025-10-15 11:59:21] 2025-10-15 09:58:42,854 | INFO     | [data] copytool_in thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:42,915 | INFO     | [payload] validate_post thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,013 | INFO     | all job control threads have been joined
[2025-10-15 11:59:21] 2025-10-15 09:58:43,021 | INFO     | [payload] failed_post thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,025 | INFO     | [data] control thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,108 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,502 | INFO     | [data] copytool_out thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,720 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,812 | INFO     | [payload] control thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:43,950 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:44,020 | INFO     | [job] control thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:44,063 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 11:59:21] 2025-10-15 09:58:45,069 | INFO     | [job] queue monitor thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:58:45,503 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 11:59:21] 2025-10-15 09:59:11,708 | INFO     | [monitor] cgroup control has ended
[2025-10-15 11:59:21] 2025-10-15 09:59:11,745 | INFO     | PID=2733 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-15 11:59:21] 2025-10-15 09:59:11,745 | INFO     | .. there are 9 such processes running
[2025-10-15 11:59:21] 2025-10-15 09:59:11,746 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 11:59:21] 2025-10-15 09:59:11,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 11:59:21] 2025-10-15 09:59:11,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 11:59:21] 2025-10-15 09:59:11,844 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796031162176)>', '<ExcThread(monitor, started 139795565090560)>']
[2025-10-15 11:59:21] 2025-10-15 09:59:12,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 11:59:21] 2025-10-15 09:59:12,752 | INFO     | [monitor] control thread has ended
[2025-10-15 11:59:21] 2025-10-15 09:59:16,869 | INFO     | all workflow threads have been joined
[2025-10-15 11:59:21] 2025-10-15 09:59:16,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 11:59:21] 2025-10-15 09:59:16,870 | INFO     | traces error code: 0
[2025-10-15 11:59:21] 2025-10-15 09:59:16,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 11:59:21] 2025-10-15 09:59:17,228 [wrapper] ==== pilot stdout END ====
[2025-10-15 11:59:21] 2025-10-15 09:59:17,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 11:59:21] 2025-10-15 09:59:17,404 [wrapper] pilotpid: 2733
[2025-10-15 11:59:21] 2025-10-15 09:59:17,508 [wrapper] Pilot exit status: 0
[2025-10-15 11:59:21] 2025-10-15 09:59:18,076 [wrapper] pandaids: 6833163837
[2025-10-15 11:59:21] 2025-10-15 09:59:19,014 [wrapper] cleanup supervisor_pilot 10920 2734
[2025-10-15 11:59:21] 2025-10-15 09:59:19,084 [wrapper] Test setup, not cleaning
[2025-10-15 11:59:21] 2025-10-15 09:59:19,134 [wrapper] apfmon messages muted
[2025-10-15 11:59:21] 2025-10-15 09:59:19,181 [wrapper] ==== wrapper stdout END ====
[2025-10-15 11:59:21] 2025-10-15 09:59:19,212 [wrapper] ==== wrapper stderr END ====
[2025-10-15 11:59:21]  *** Error codes and diagnostics ***
[2025-10-15 11:59:21]     "exeErrorCode": 0,
[2025-10-15 11:59:21]     "exeErrorDiag": "",
[2025-10-15 11:59:21]     "pilotErrorCode": 0,
[2025-10-15 11:59:21]     "pilotErrorDiag": "",
[2025-10-15 11:59:21]  *** Listing of results directory ***
[2025-10-15 11:59:21] total 393316
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc    552446 Oct  7 04:44 pilot3.tar.gz
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc      5112 Oct  7 04:56 queuedata.json
[2025-10-15 11:59:21] -rwx------. 1 boinc boinc     36292 Oct  7 04:57 runpilot2-wrapper.sh
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc       100 Oct 15 09:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 11:59:21] -rwxr-xr-x. 1 boinc boinc      7986 Oct 15 09:01 run_atlas
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc       105 Oct 15 09:01 job.xml
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc      6392 Oct 15 09:01 init_data.xml
[2025-10-15 11:59:21] -rw-r--r--. 2 boinc boinc 214420113 Oct 15 09:01 EVNT.46376901._004694.pool.root.1
[2025-10-15 11:59:21] -rw-r--r--. 2 boinc boinc     15120 Oct 15 09:01 start_atlas.sh
[2025-10-15 11:59:21] drwxrwx--x. 2 boinc boinc        68 Oct 15 09:01 shared
[2025-10-15 11:59:21] -rw-r--r--. 2 boinc boinc    565604 Oct 15 09:01 input.tar.gz
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc         0 Oct 15 09:01 boinc_lockfile
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc      2520 Oct 15 09:01 pandaJob.out
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc    974015 Oct 15 09:02 agis_schedconf.cvmfs.json
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc   1560740 Oct 15 09:02 agis_ddmendpoints.agis.ALL.json
[2025-10-15 11:59:21] drwx------. 4 boinc boinc      4096 Oct 15 09:02 pilot3
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc 180792339 Oct 15 11:55 HITS.46376905._126291.pool.root.1
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc       531 Oct 15 11:56 boinc_task_state.xml
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc      1016 Oct 15 11:56 memory_monitor_summary.json
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc    400149 Oct 15 11:56 log.46376905._126291.job.log.tgz.1
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc        95 Oct 15 11:58 pilot_heartbeat.json
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc      7775 Oct 15 11:58 heartbeat.json
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc      4884 Oct 15 11:59 pilotlog.txt
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc      8192 Oct 15 11:59 boinc_mmap_file
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc   1437662 Oct 15 11:59 log.46376905._126291.job.log.1
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc        28 Oct 15 11:59 wrapper_checkpoint.txt
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc       357 Oct 15 11:59 output.list
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc       620 Oct 15 11:59 runtime_log
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc   1853440 Oct 15 11:59 result.tar.gz
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc       656 Oct 15 11:59 x8KMDmj4CQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGmVNDmq6ldXo.diag
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc      8717 Oct 15 11:59 runtime_log.err
[2025-10-15 11:59:21] -rw-r--r--. 1 boinc boinc     20548 Oct 15 11:59 stderr.txt
[2025-10-15 11:59:21] HITS file was successfully produced:
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc 180792339 Oct 15 11:55 shared/HITS.pool.root.1
[2025-10-15 11:59:21]  *** Contents of shared directory: ***
[2025-10-15 11:59:21] total 388336
[2025-10-15 11:59:21] -rw-r--r--. 2 boinc boinc 214420113 Oct 15 09:01 ATLAS.root_0
[2025-10-15 11:59:21] -rw-r--r--. 2 boinc boinc     15120 Oct 15 09:01 start_atlas.sh
[2025-10-15 11:59:21] -rw-r--r--. 2 boinc boinc    565604 Oct 15 09:01 input.tar.gz
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc 180792339 Oct 15 11:55 HITS.pool.root.1
[2025-10-15 11:59:21] -rw-------. 1 boinc boinc   1853440 Oct 15 11:59 result.tar.gz
11:59:23 (31063): run_atlas exited; CPU time 39274.221980
11:59:23 (31063): called boinc_finish(0)

</stderr_txt>
]]>

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