Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:33:53 (207910): wrapper (7.7.26015): starting
08:33:53 (207910): wrapper: running run_atlas (--nthreads 4)
[2025-10-14 08:33:53] Arguments: --nthreads 4
[2025-10-14 08:33:53] Threads: 4
[2025-10-14 08:33:53] Checking for CVMFS
[2025-10-14 08:33:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 08:33:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 08:33:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 08:33:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 08:33:56] 2.9.2.0 208105 0 30068 151688 3 1 28903042 36864001 0 130560 0 0 0.000 1291 1929 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-14 08:33:56] CVMFS is ok
[2025-10-14 08:33:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 08:33:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 08:33:56] Further information can be found at the LHC@home message board.
[2025-10-14 08:33:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 08:33:56] Checking for apptainer binary...
[2025-10-14 08:33:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 08:33:56] Running /usr/bin/apptainer --version
[2025-10-14 08:33:56] apptainer version 1.4.1-1.1
[2025-10-14 08:33:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 08:33:56] thA325
[2025-10-14 08:33:56] apptainer works
[2025-10-14 08:33:56] Set ATHENA_PROC_NUMBER=4
[2025-10-14 08:33:56] Set ATHENA_CORE_NUMBER=4
[2025-10-14 08:33:56] Starting ATLAS job with PandaID=6843923608
[2025-10-14 08:33:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 09:42:23]  *** The last 200 lines of the pilot log: ***
[2025-10-14 09:42:23] 2025-10-14 07:41:50,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 09:42:23] 2025-10-14 07:41:50,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 09:42:23] 2025-10-14 07:41:50,745 | INFO     | job 6843923608 has completed (purged errors)
[2025-10-14 09:42:23] 2025-10-14 07:41:50,745 | INFO     | overall cleanup function is called
[2025-10-14 09:42:23] 2025-10-14 07:41:51,751 | INFO     | --- collectZombieJob: --- 10, [218823]
[2025-10-14 09:42:23] 2025-10-14 07:41:51,752 | INFO     | zombie collector waiting for pid 218823
[2025-10-14 09:42:23] 2025-10-14 07:41:51,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 09:42:23] 2025-10-14 07:41:51,752 | INFO     | collected zombie processes
[2025-10-14 09:42:23] 2025-10-14 07:41:51,752 | INFO     | will attempt to kill all subprocesses of pid=218823
[2025-10-14 09:42:23] 2025-10-14 07:41:51,794 | INFO     | process IDs to be killed: [218823] (in reverse order)
[2025-10-14 09:42:23] 2025-10-14 07:41:51,823 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 09:42:23] 2025-10-14 07:41:51,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 09:42:23] 2025-10-14 07:41:51,824 | INFO     | did not find any defunct processes belonging to 218823
[2025-10-14 09:42:23] 2025-10-14 07:41:51,825 | INFO     | did not find any defunct processes belonging to 218823
[2025-10-14 09:42:23] 2025-10-14 07:41:51,826 | INFO     | ready for new job
[2025-10-14 09:42:23] 2025-10-14 07:41:51,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 09:42:23] 2025-10-14 07:41:51,826 | INFO     | ***************************************
[2025-10-14 09:42:23] 2025-10-14 07:41:51,826 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 09:42:23] 2025-10-14 07:41:51,826 | INFO     | ***************************************
[2025-10-14 09:42:23] 2025-10-14 07:41:51,826 | INFO     | 
[2025-10-14 09:42:23] 2025-10-14 07:41:51,827 | INFO     | architecture information:
[2025-10-14 09:42:23] 2025-10-14 07:41:51,827 | INFO     | executing command: cat /etc/os-release
[2025-10-14 09:42:23] 2025-10-14 07:41:51,838 | INFO     | cat /etc/os-release:
[2025-10-14 09:42:23] NAME="CentOS Linux"
[2025-10-14 09:42:23] VERSION="7 (Core)"
[2025-10-14 09:42:23] ID="centos"
[2025-10-14 09:42:23] ID_LIKE="rhel fedora"
[2025-10-14 09:42:23] VERSION_ID="7"
[2025-10-14 09:42:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 09:42:23] ANSI_COLOR="0;31"
[2025-10-14 09:42:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 09:42:23] HOME_URL="https://www.centos.org/"
[2025-10-14 09:42:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 09:42:23] 
[2025-10-14 09:42:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 09:42:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 09:42:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 09:42:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 09:42:23] 
[2025-10-14 09:42:23] 2025-10-14 07:41:51,839 | INFO     | ***************************************
[2025-10-14 09:42:23] 2025-10-14 07:41:52,342 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-14 09:42:23] 2025-10-14 07:41:52,357 | INFO     | sufficient remaining disk space (232401141760 B)
[2025-10-14 09:42:23] 2025-10-14 07:41:52,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 09:42:23] 2025-10-14 07:41:52,358 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 09:42:23] 2025-10-14 07:41:52,358 | INFO     | update_server=False
[2025-10-14 09:42:23] 2025-10-14 07:41:52,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 09:42:23] 2025-10-14 07:41:52,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 09:42:23] 2025-10-14 07:41:52,649 | INFO     | aborting loop
[2025-10-14 09:42:23] 2025-10-14 07:41:52,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 09:42:23] 2025-10-14 07:41:52,999 | INFO     | all data control threads have been joined
[2025-10-14 09:42:23] 2025-10-14 07:41:53,152 | INFO     | all payload control threads have been joined
[2025-10-14 09:42:23] 2025-10-14 07:41:53,364 | INFO     | [job] retrieve thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,382 | INFO     | all job control threads have been joined
[2025-10-14 09:42:23] 2025-10-14 07:41:53,383 | INFO     | [data] copytool_in thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,384 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,463 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,645 | INFO     | [payload] failed_post thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,655 | INFO     | [job] job monitor thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,812 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:53,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 09:42:23] 2025-10-14 07:41:54,005 | INFO     | [data] control thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:54,158 | INFO     | [payload] control thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:54,346 | INFO     | [payload] validate_post thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:54,388 | INFO     | [job] control thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:54,770 | INFO     | [job] validate thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:55,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 09:42:23] 2025-10-14 07:41:55,830 | INFO     | [data] copytool_out thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:56,303 | INFO     | [job] queue monitor thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:41:56,726 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:42:02,633 | INFO     | job.realtimelogging is not enabled
[2025-10-14 09:42:23] 2025-10-14 07:42:03,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 09:42:23] 2025-10-14 07:42:11,769 | INFO     | [monitor] cgroup control has ended
[2025-10-14 09:42:23] 2025-10-14 07:42:13,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788824385344)>', '<ExcThread(monitor, started 139788451550976)>']
[2025-10-14 09:42:23] 2025-10-14 07:42:18,208 | INFO     | all workflow threads have been joined
[2025-10-14 09:42:23] 2025-10-14 07:42:18,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 09:42:23] 2025-10-14 07:42:18,208 | INFO     | traces error code: 0
[2025-10-14 09:42:23] 2025-10-14 07:42:18,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 09:42:23] 2025-10-14 07:42:23,386 | INFO     | PID=212250 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 09:42:23] 2025-10-14 07:42:23,386 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 09:42:23] 2025-10-14 07:42:23,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 09:42:23] 2025-10-14 07:42:23,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 09:42:23] 2025-10-14 07:42:23,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 09:42:23] 2025-10-14 07:42:23,386 | INFO     | [monitor] control thread has ended
[2025-10-14 09:42:23] 2025-10-14 07:42:23,449 [wrapper] ==== pilot stdout END ====
[2025-10-14 09:42:23] 2025-10-14 07:42:23,452 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 09:42:23] 2025-10-14 07:42:23,456 [wrapper] pilotpid: 212250
[2025-10-14 09:42:23] 2025-10-14 07:42:23,459 [wrapper] Pilot exit status: 0
[2025-10-14 09:42:23] 2025-10-14 07:42:23,468 [wrapper] pandaids: 6843923608
[2025-10-14 09:42:23] 2025-10-14 07:42:23,487 [wrapper] cleanup supervisor_pilot  228290 212251
[2025-10-14 09:42:23] 2025-10-14 07:42:23,491 [wrapper] Test setup, not cleaning
[2025-10-14 09:42:23] 2025-10-14 07:42:23,494 [wrapper] apfmon messages muted
[2025-10-14 09:42:23] 2025-10-14 07:42:23,497 [wrapper] ==== wrapper stdout END ====
[2025-10-14 09:42:23] 2025-10-14 07:42:23,500 [wrapper] ==== wrapper stderr END ====
[2025-10-14 09:42:23]  *** Error codes and diagnostics ***
[2025-10-14 09:42:23]     "exeErrorCode": 0,
[2025-10-14 09:42:23]     "exeErrorDiag": "",
[2025-10-14 09:42:23]     "pilotErrorCode": 0,
[2025-10-14 09:42:23]     "pilotErrorDiag": "",
[2025-10-14 09:42:23]  *** Listing of results directory ***
[2025-10-14 09:42:23] total 409360
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc    557409 Oct 14 08:17 pilot3.tar.gz
[2025-10-14 09:42:23] -rwx------ 1 boinc boinc     36292 Oct 14 08:33 runpilot2-wrapper.sh
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc      5112 Oct 14 08:33 queuedata.json
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc       100 Oct 14 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 09:42:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 14 08:33 run_atlas
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc       105 Oct 14 08:33 job.xml
[2025-10-14 09:42:23] -rw-r--r-- 2 boinc boinc 220803603 Oct 14 08:33 EVNT.46676267._001830.pool.root.1
[2025-10-14 09:42:23] -rw-r--r-- 2 boinc boinc    569685 Oct 14 08:33 input.tar.gz
[2025-10-14 09:42:23] -rw-r--r-- 2 boinc boinc     15120 Oct 14 08:33 start_atlas.sh
[2025-10-14 09:42:23] drwxrwx--x 2 boinc boinc      4096 Oct 14 08:33 shared
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc         0 Oct 14 08:33 boinc_setup_complete
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc      6368 Oct 14 08:33 init_data.xml
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc         0 Oct 14 08:33 boinc_lockfile
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc      2549 Oct 14 08:33 pandaJob.out
[2025-10-14 09:42:23] -rw------- 1 boinc boinc    972807 Oct 14 08:34 agis_schedconf.cvmfs.json
[2025-10-14 09:42:23] -rw------- 1 boinc boinc   1560580 Oct 14 08:34 agis_ddmendpoints.agis.ALL.json
[2025-10-14 09:42:23] drwx------ 5 boinc boinc      4096 Oct 14 08:34 pilot3
[2025-10-14 09:42:23] -rw------- 1 boinc boinc 192778215 Oct 14 09:41 HITS.46676269._097127.pool.root.1
[2025-10-14 09:42:23] -rw------- 1 boinc boinc        95 Oct 14 09:41 pilot_heartbeat.json
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc       529 Oct 14 09:41 boinc_task_state.xml
[2025-10-14 09:42:23] -rw------- 1 boinc boinc      1018 Oct 14 09:41 memory_monitor_summary.json
[2025-10-14 09:42:23] -rw------- 1 boinc boinc    252735 Oct 14 09:41 log.46676269._097127.job.log.tgz.1
[2025-10-14 09:42:23] -rw------- 1 boinc boinc      7761 Oct 14 09:41 heartbeat.json
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc      8192 Oct 14 09:42 boinc_mmap_file
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc        27 Oct 14 09:42 wrapper_checkpoint.txt
[2025-10-14 09:42:23] -rw------- 1 boinc boinc       746 Oct 14 09:42 pilotlog.txt
[2025-10-14 09:42:23] -rw------- 1 boinc boinc    605835 Oct 14 09:42 log.46676269._097127.job.log.1
[2025-10-14 09:42:23] -rw------- 1 boinc boinc       357 Oct 14 09:42 output.list
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc       620 Oct 14 09:42 runtime_log
[2025-10-14 09:42:23] -rw------- 1 boinc boinc    880640 Oct 14 09:42 result.tar.gz
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc      8777 Oct 14 09:42 runtime_log.err
[2025-10-14 09:42:23] -rw------- 1 boinc boinc       658 Oct 14 09:42 oYdNDmJmnS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6lVMDmmhcmmm.diag
[2025-10-14 09:42:23] -rw-r--r-- 1 boinc boinc     11086 Oct 14 09:42 stderr.txt
[2025-10-14 09:42:23] HITS file was successfully produced:
[2025-10-14 09:42:23] -rw------- 1 boinc boinc 192778215 Oct 14 09:41 shared/HITS.pool.root.1
[2025-10-14 09:42:23]  *** Contents of shared directory: ***
[2025-10-14 09:42:23] total 405336
[2025-10-14 09:42:23] -rw-r--r-- 2 boinc boinc 220803603 Oct 14 08:33 ATLAS.root_0
[2025-10-14 09:42:23] -rw-r--r-- 2 boinc boinc    569685 Oct 14 08:33 input.tar.gz
[2025-10-14 09:42:23] -rw-r--r-- 2 boinc boinc     15120 Oct 14 08:33 start_atlas.sh
[2025-10-14 09:42:23] -rw------- 1 boinc boinc 192778215 Oct 14 09:41 HITS.pool.root.1
[2025-10-14 09:42:23] -rw------- 1 boinc boinc    880640 Oct 14 09:42 result.tar.gz
09:42:25 (207910): run_atlas exited; CPU time 15195.009894
09:42:25 (207910): called boinc_finish(0)

</stderr_txt>
]]>

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