Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:20:16 (8982): wrapper (7.7.26015): starting
20:20:16 (8982): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 20:20:16] Arguments: --nthreads 8
[2025-10-13 20:20:16] Threads: 8
[2025-10-13 20:20:16] Checking for CVMFS
[2025-10-13 20:20:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 20:20:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 20:20:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 20:20:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 20:20:16] 2.11.2.0 2871 197885 88676 151678 0 1 13484700 20275201 1 130560 1 73823417 99.980 7991845 27363 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 20:20:16] CVMFS is ok
[2025-10-13 20:20:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 20:20:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 20:20:16] Further information can be found at the LHC@home message board.
[2025-10-13 20:20:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 20:20:16] Checking for apptainer binary...
[2025-10-13 20:20:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 20:20:16] Running /usr/bin/apptainer --version
[2025-10-13 20:20:16] apptainer version 1.3.2-1.el7
[2025-10-13 20:20:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 20:20:18] c-115-7.aglt2.org
[2025-10-13 20:20:18] apptainer works
[2025-10-13 20:20:18] Set ATHENA_PROC_NUMBER=8
[2025-10-13 20:20:18] Set ATHENA_CORE_NUMBER=8
[2025-10-13 20:20:18] Starting ATLAS job with PandaID=6831976450
[2025-10-13 20:20:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 21:59:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 21:59:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 21:59:52]  replicas=None
[2025-10-13 21:59:52]  scope=mc23_13p6TeV
[2025-10-13 21:59:52]  status=None
[2025-10-13 21:59:52]  status_code=0
[2025-10-13 21:59:52]  storage_token=
[2025-10-13 21:59:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831976450/log.46376905._095992.job.log.tgz.1
[2025-10-13 21:59:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/71/log.46376905._095992.job.log.tgz.1
[2025-10-13 21:59:52]  workdir=None
[2025-10-13 21:59:52] ]
[2025-10-13 21:59:52] 2025-10-14 01:59:02,610 | INFO     | transferring file log.46376905._095992.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831976450/log.46376905._095992.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 21:59:52] 2025-10-14 01:59:02,611 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831976450/log.46376905._095992.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._095992.job
[2025-10-13 21:59:52] 2025-10-14 01:59:02,635 | INFO     | adding to output.list: log.46376905._095992.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/71/log.46376905._095992.job.log.tg
[2025-10-13 21:59:52] 2025-10-14 01:59:02,636 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 21:59:52] 2025-10-14 01:59:02,637 | INFO     | summary of transferred files:
[2025-10-13 21:59:52] 2025-10-14 01:59:02,637 | INFO     |  -- lfn=log.46376905._095992.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 21:59:52] 2025-10-14 01:59:02,637 | INFO     | stage-out finished correctly
[2025-10-13 21:59:52] 2025-10-14 01:59:03,081 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 21:59:52] 2025-10-14 01:59:03,111 | INFO     | monitor loop #437: job 0:6831976450 is in state 'finished'
[2025-10-13 21:59:52] 2025-10-14 01:59:03,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:59:52] 2025-10-14 01:59:03,987 | INFO     | time since job start (5906s) is within the limit (172800.0s)
[2025-10-13 21:59:52] 2025-10-14 01:59:03,997 | INFO     | job 6831976450 has state=finished
[2025-10-13 21:59:52] 2025-10-14 01:59:03,997 | INFO     | preparing for final server update for job 6831976450 in state='finished'
[2025-10-13 21:59:52] 2025-10-14 01:59:03,998 | INFO     | this job has now completed (state=finished)
[2025-10-13 21:59:52] 2025-10-14 01:59:03,998 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 21:59:52] 2025-10-14 01:59:03,998 | INFO     | log transfer has been attempted: DONE
[2025-10-13 21:59:52] 2025-10-14 01:59:03,998 | INFO     | job 6831976450 has finished - writing final server update
[2025-10-13 21:59:52] 2025-10-14 01:59:03,999 | INFO     | total number of processed events: 400 (read)
[2025-10-13 21:59:52] 2025-10-14 01:59:03,999 | INFO     | executing command: lscpu
[2025-10-13 21:59:52] 2025-10-14 01:59:04,028 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 21:59:52] 2025-10-14 01:59:05,625 | INFO     | monitor loop #438: job 0:6831976450 is in state 'finished'
[2025-10-13 21:59:52] 2025-10-14 01:59:05,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:59:52] 2025-10-14 01:59:05,992 | INFO     | time since job start (5908s) is within the limit (172800.0s)
[2025-10-13 21:59:52] 2025-10-14 01:59:07,097 | INFO     | PID=12669 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 21:59:52] 2025-10-14 01:59:08,098 | INFO     | time since job start (5911s) is within the limit (172800.0s)
[2025-10-13 21:59:52] 2025-10-14 01:59:08,129 | INFO     | monitor loop #439: job 0:6831976450 is in state 'finished'
[2025-10-13 21:59:52] 2025-10-14 01:59:08,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,498 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 21:59:52] 2025-10-14 01:59:09,501 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.0
[2025-10-13 21:59:52] 2025-10-14 01:59:09,506 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831976450/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,507 | INFO     | extracted standard info from prmon json
[2025-10-13 21:59:52] 2025-10-14 01:59:09,507 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 21:59:52] 2025-10-14 01:59:09,507 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 21:59:52] 2025-10-14 01:59:09,508 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 21:59:52] 2025-10-14 01:59:09,508 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 21:59:52] 2025-10-14 01:59:09,510 | INFO     | fitting pss+swap vs Time
[2025-10-13 21:59:52] 2025-10-14 01:59:09,511 | INFO     | sum of square deviations: 226022842.5
[2025-10-13 21:59:52] 2025-10-14 01:59:09,511 | INFO     | sum of deviations: -15543121805.5
[2025-10-13 21:59:52] 2025-10-14 01:59:09,511 | INFO     | mean x: 1760404287.5
[2025-10-13 21:59:52] 2025-10-14 01:59:09,511 | INFO     | mean y: 2669044.8777777776
[2025-10-13 21:59:52] 2025-10-14 01:59:09,511 | INFO     | -- intersect: 121062018466.77057
[2025-10-13 21:59:52] 2025-10-14 01:59:09,512 | INFO     | intersect: 121062018466.77057
[2025-10-13 21:59:52] 2025-10-14 01:59:09,512 | INFO     | chi2: 0.1036267606373766
[2025-10-13 21:59:52] 2025-10-14 01:59:09,512 | INFO     | -- intersect: 121062018466.77057
[2025-10-13 21:59:52] 2025-10-14 01:59:09,512 | INFO     | current memory leak: -68.77 B/s (using 90 data points, chi2=0.10)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,512 | INFO     | could have reported an average CPU frequency of 2116 MHz (7 samples)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | ..............................
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . Timing measurements:
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . get job = 0 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . initial setup = 2 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . payload setup = 8 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . stage-in = 0 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . payload execution = 5875 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . stage-out = 0 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,513 | INFO     | . log creation = 0 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,514 | INFO     | ..............................
[2025-10-13 21:59:52] 2025-10-14 01:59:09,925 | INFO     | 
[2025-10-13 21:59:52] 2025-10-14 01:59:09,926 | INFO     | job summary report
[2025-10-13 21:59:52] 2025-10-14 01:59:09,926 | INFO     | --------------------------------------------------
[2025-10-13 21:59:52] 2025-10-14 01:59:09,926 | INFO     | PanDA job id: 6831976450
[2025-10-13 21:59:52] 2025-10-14 01:59:09,926 | INFO     | task id: 46376905
[2025-10-13 21:59:52] 2025-10-14 01:59:09,926 | INFO     | errors: (none)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 21:59:52] 2025-10-14 01:59:09,927 | INFO     | pilot state: finished 
[2025-10-13 21:59:52] 2025-10-14 01:59:09,927 | INFO     | transexitcode: 0
[2025-10-13 21:59:52] 2025-10-14 01:59:09,927 | INFO     | exeerrorcode: 0
[2025-10-13 21:59:52] 2025-10-14 01:59:09,927 | INFO     | exeerrordiag: 
[2025-10-13 21:59:52] 2025-10-14 01:59:09,927 | INFO     | exitcode: 0
[2025-10-13 21:59:52] 2025-10-14 01:59:09,928 | INFO     | exitmsg: OK
[2025-10-13 21:59:52] 2025-10-14 01:59:09,928 | INFO     | cpuconsumptiontime: 43534 s
[2025-10-13 21:59:52] 2025-10-14 01:59:09,928 | INFO     | nevents: 400
[2025-10-13 21:59:52] 2025-10-14 01:59:09,928 | INFO     | neventsw: 0
[2025-10-13 21:59:52] 2025-10-14 01:59:09,928 | INFO     | pid: 19463
[2025-10-13 21:59:52] 2025-10-14 01:59:09,928 | INFO     | pgrp: 19463
[2025-10-13 21:59:52] 2025-10-14 01:59:09,929 | INFO     | corecount: 8
[2025-10-13 21:59:52] 2025-10-14 01:59:09,929 | INFO     | event service: False
[2025-10-13 21:59:52] 2025-10-14 01:59:09,929 | INFO     | sizes: {0: 2348645, 1: 2348844, 7: 2349106, 11: 2349134, 5887: 2375830, 5889: 2385012, 5896: 2385150}
[2025-10-13 21:59:52] 2025-10-14 01:59:09,929 | INFO     | --------------------------------------------------
[2025-10-13 21:59:52] 2025-10-14 01:59:09,929 | INFO     | 
[2025-10-13 21:59:52] 2025-10-14 01:59:09,930 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 21:59:52] 2025-10-14 01:59:09,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,958 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,958 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,958 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,958 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,960 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,960 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,960 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,960 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,961 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,961 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,961 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 21:59:52] 2025-10-14 01:59:09,961 | INFO     | job 6831976450 has completed (purged errors)
[2025-10-13 21:59:52] 2025-10-14 01:59:09,961 | INFO     | overall cleanup function is called
[2025-10-13 21:59:52] 2025-10-14 01:59:10,969 | INFO     | --- collectZombieJob: --- 10, [19463]
[2025-10-13 21:59:52] 2025-10-14 01:59:10,970 | INFO     | zombie collector waiting for pid 19463
[2025-10-13 21:59:52] 2025-10-14 01:59:10,970 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 21:59:52] 2025-10-14 01:59:10,970 | INFO     | collected zombie processes
[2025-10-13 21:59:52] 2025-10-14 01:59:10,970 | INFO     | will attempt to kill all subprocesses of pid=19463
[2025-10-13 21:59:52] 2025-10-14 01:59:11,053 | INFO     | process IDs to be killed: [19463] (in reverse order)
[2025-10-13 21:59:52] 2025-10-14 01:59:11,110 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 21:59:52] 2025-10-14 01:59:11,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 21:59:52] 2025-10-14 01:59:11,115 | INFO     | did not find any defunct processes belonging to 19463
[2025-10-13 21:59:52] 2025-10-14 01:59:11,118 | INFO     | did not find any defunct processes belonging to 19463
[2025-10-13 21:59:52] 2025-10-14 01:59:11,119 | INFO     | ready for new job
[2025-10-13 21:59:52] 2025-10-14 01:59:11,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 21:59:52] 2025-10-14 01:59:11,120 | INFO     | ***************************************
[2025-10-13 21:59:52] 2025-10-14 01:59:11,120 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 21:59:52] 2025-10-14 01:59:11,121 | INFO     | ***************************************
[2025-10-13 21:59:52] 2025-10-14 01:59:11,121 | INFO     | 
[2025-10-13 21:59:52] 2025-10-14 01:59:11,121 | INFO     | architecture information:
[2025-10-13 21:59:52] 2025-10-14 01:59:11,122 | INFO     | executing command: cat /etc/os-release
[2025-10-13 21:59:52] 2025-10-14 01:59:11,154 | INFO     | cat /etc/os-release:
[2025-10-13 21:59:52] NAME="CentOS Linux"
[2025-10-13 21:59:52] VERSION="7 (Core)"
[2025-10-13 21:59:52] ID="centos"
[2025-10-13 21:59:52] ID_LIKE="rhel fedora"
[2025-10-13 21:59:52] VERSION_ID="7"
[2025-10-13 21:59:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 21:59:52] ANSI_COLOR="0;31"
[2025-10-13 21:59:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 21:59:52] HOME_URL="https://www.centos.org/"
[2025-10-13 21:59:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 21:59:52] 
[2025-10-13 21:59:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 21:59:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 21:59:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 21:59:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 21:59:52] 
[2025-10-13 21:59:52] 2025-10-14 01:59:11,154 | INFO     | ***************************************
[2025-10-13 21:59:52] 2025-10-14 01:59:11,657 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 21:59:52] 2025-10-14 01:59:11,677 | INFO     | sufficient remaining disk space (18613272576 B)
[2025-10-13 21:59:52] 2025-10-14 01:59:11,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 21:59:52] 2025-10-14 01:59:11,677 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 21:59:52] 2025-10-14 01:59:11,678 | INFO     | update_server=False
[2025-10-13 21:59:52] 2025-10-14 01:59:11,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 21:59:52] 2025-10-14 01:59:11,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 21:59:52] 2025-10-14 01:59:11,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:59:52] 2025-10-14 01:59:11,679 | INFO     | aborting loop
[2025-10-13 21:59:52] 2025-10-14 01:59:12,189 | INFO     | all data control threads have been joined
[2025-10-13 21:59:52] 2025-10-14 01:59:12,309 | INFO     | all job control threads have been joined
[2025-10-13 21:59:52] 2025-10-14 01:59:12,659 | INFO     | all payload control threads have been joined
[2025-10-13 21:59:52] 2025-10-14 01:59:12,684 | INFO     | [job] retrieve thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:12,685 | INFO     | [job] job monitor thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:12,772 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:12,776 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:12,779 | INFO     | [payload] failed_post thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:12,854 | INFO     | [data] copytool_in thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:12,946 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,190 | INFO     | [data] control thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,313 | INFO     | [job] control thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,572 | INFO     | [payload] validate_post thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,635 | INFO     | [job] validate thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,665 | INFO     | [payload] control thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 21:59:52] 2025-10-14 01:59:13,683 | INFO     | [data] copytool_out thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:13,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:14,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 21:59:52] 2025-10-14 01:59:15,609 | INFO     | [job] queue monitor thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:17,678 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 21:59:52] 2025-10-14 01:59:41,328 | INFO     | PID=12669 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 21:59:52] 2025-10-14 01:59:41,328 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 21:59:52] 2025-10-14 01:59:41,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 21:59:52] 2025-10-14 01:59:41,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 21:59:52] 2025-10-14 01:59:46,078 | INFO     | [monitor] cgroup control has ended
[2025-10-13 21:59:52] 2025-10-14 01:59:47,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636847802176)>', '<ExcThread(monitor, started 140636388833024)>']
[2025-10-13 21:59:52] 2025-10-14 01:59:47,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 21:59:52] 2025-10-14 01:59:47,353 | INFO     | [monitor] control thread has ended
[2025-10-13 21:59:52] 2025-10-14 01:59:52,202 | INFO     | all workflow threads have been joined
[2025-10-13 21:59:52] 2025-10-14 01:59:52,207 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 21:59:52] 2025-10-14 01:59:52,208 | INFO     | traces error code: 0
[2025-10-13 21:59:52] 2025-10-14 01:59:52,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 21:59:52] 2025-10-14 01:59:52,322 [wrapper] ==== pilot stdout END ====
[2025-10-13 21:59:52] 2025-10-14 01:59:52,326 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 21:59:52] 2025-10-14 01:59:52,331 [wrapper] pilotpid: 12669
[2025-10-13 21:59:52] 2025-10-14 01:59:52,336 [wrapper] Pilot exit status: 0
[2025-10-13 21:59:52] 2025-10-14 01:59:52,354 [wrapper] pandaids: 6831976450
[2025-10-13 21:59:52] 2025-10-14 01:59:52,395 [wrapper] cleanup supervisor_pilot 17169 12670
[2025-10-13 21:59:52] 2025-10-14 01:59:52,400 [wrapper] Test setup, not cleaning
[2025-10-13 21:59:52] 2025-10-14 01:59:52,405 [wrapper] apfmon messages muted
[2025-10-13 21:59:52] 2025-10-14 01:59:52,409 [wrapper] ==== wrapper stdout END ====
[2025-10-13 21:59:52] 2025-10-14 01:59:52,414 [wrapper] ==== wrapper stderr END ====
[2025-10-13 21:59:52]  *** Error codes and diagnostics ***
[2025-10-13 21:59:52]     "exeErrorCode": 0,
[2025-10-13 21:59:52]     "exeErrorDiag": "",
[2025-10-13 21:59:52]     "pilotErrorCode": 0,
[2025-10-13 21:59:52]     "pilotErrorDiag": "",
[2025-10-13 21:59:52]  *** Listing of results directory ***
[2025-10-13 21:59:52] total 391792
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 16:57 pilot3.tar.gz
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 16:59 queuedata.json
[2025-10-13 21:59:52] -rwx------ 1 boincer umatlas     36292 Oct  5 16:59 runpilot2-wrapper.sh
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas       100 Oct 13 20:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 21:59:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 20:20 run_atlas
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas       105 Oct 13 20:20 job.xml
[2025-10-13 21:59:52] -rw-r--r-- 2 boincer umatlas 214640138 Oct 13 20:20 EVNT.46376901._003540.pool.root.1
[2025-10-13 21:59:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 20:20 start_atlas.sh
[2025-10-13 21:59:52] drwxrwx--x 2 boincer umatlas      4096 Oct 13 20:20 shared
[2025-10-13 21:59:52] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 20:20 input.tar.gz
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas         0 Oct 13 20:20 boinc_lockfile
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas      2519 Oct 13 20:20 pandaJob.out
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas    972807 Oct 13 20:20 agis_schedconf.cvmfs.json
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas   1560580 Oct 13 20:20 agis_ddmendpoints.agis.ALL.json
[2025-10-13 21:59:52] drwx------ 4 boincer umatlas      4096 Oct 13 20:20 pilot3
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas      5908 Oct 13 21:56 init_data.xml
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas 180269771 Oct 13 21:58 HITS.46376905._095992.pool.root.1
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas        95 Oct 13 21:58 pilot_heartbeat.json
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas      1048 Oct 13 21:58 memory_monitor_summary.json
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas       529 Oct 13 21:58 boinc_task_state.xml
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas    358500 Oct 13 21:59 log.46376905._095992.job.log.tgz.1
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas      7849 Oct 13 21:59 heartbeat.json
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas        27 Oct 13 21:59 wrapper_checkpoint.txt
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 21:59 boinc_mmap_file
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas      4746 Oct 13 21:59 pilotlog.txt
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas    837244 Oct 13 21:59 log.46376905._095992.job.log.1
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas       357 Oct 13 21:59 output.list
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas       620 Oct 13 21:59 runtime_log
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas   1218560 Oct 13 21:59 result.tar.gz
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas      8698 Oct 13 21:59 runtime_log.err
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas       657 Oct 13 21:59 CvxNDmt0kP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKXHMDmMniK3m.diag
[2025-10-13 21:59:52] -rw-r--r-- 1 boincer umatlas     21950 Oct 13 21:59 stderr.txt
[2025-10-13 21:59:52] HITS file was successfully produced:
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas 180269771 Oct 13 21:58 shared/HITS.pool.root.1
[2025-10-13 21:59:52]  *** Contents of shared directory: ***
[2025-10-13 21:59:52] total 387428
[2025-10-13 21:59:52] -rw-r--r-- 2 boincer umatlas 214640138 Oct 13 20:20 ATLAS.root_0
[2025-10-13 21:59:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 20:20 start_atlas.sh
[2025-10-13 21:59:52] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 20:20 input.tar.gz
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas 180269771 Oct 13 21:58 HITS.pool.root.1
[2025-10-13 21:59:52] -rw------- 1 boincer umatlas   1218560 Oct 13 21:59 result.tar.gz
21:59:54 (8982): run_atlas exited; CPU time 43495.728385
21:59:54 (8982): called boinc_finish(0)

</stderr_txt>
]]>

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