Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:22:54 (4113264): wrapper (7.7.26015): starting
18:22:54 (4113264): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 18:22:54] Arguments: --nthreads 9
[2025-10-13 18:22:54] Threads: 9
[2025-10-13 18:22:54] Checking for CVMFS
[2025-10-13 18:22:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:22:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:22:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:22:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:22:54] 2.13.2.0 2956151 131279 437668 151676 3 621 27994482 32935937 46194 16776704 0 890561477 99.726 620665366 32923 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 18:22:54] CVMFS is ok
[2025-10-13 18:22:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:22:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:22:54] Further information can be found at the LHC@home message board.
[2025-10-13 18:22:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:22:54] Checking for apptainer binary...
[2025-10-13 18:22:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:22:54] Running /usr/bin/apptainer --version
[2025-10-13 18:22:55] apptainer version 1.4.3-1.el9
[2025-10-13 18:22:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:22:55] c7-9-15.aglt2.org
[2025-10-13 18:22:55] apptainer works
[2025-10-13 18:22:55] Set ATHENA_PROC_NUMBER=9
[2025-10-13 18:22:55] Set ATHENA_CORE_NUMBER=9
[2025-10-13 18:22:55] Starting ATLAS job with PandaID=6837344017
[2025-10-13 18:22:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:22:33]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:22:33] 2025-10-13 23:21:40,869 | INFO     | time since job start (3499s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:41,052 | WARNING  | process 4151680 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 19:22:33] 2025-10-13 23:21:41,052 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837344017/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 19:22:33] 2025-10-13 23:21:41,351 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 19:22:33] 2025-10-13 23:21:41,595 | INFO     | number of running child processes to parent process 4151680: 1
[2025-10-13 19:22:33] 2025-10-13 23:21:41,595 | INFO     | maximum number of monitored processes: 6
[2025-10-13 19:22:33] 2025-10-13 23:21:42,878 | INFO     | time since job start (3501s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:43,289 | INFO     | job 6837344017 has state=finished
[2025-10-13 19:22:33] 2025-10-13 23:21:43,289 | INFO     | preparing for final server update for job 6837344017 in state='finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:43,289 | INFO     | this job has now completed (state=finished)
[2025-10-13 19:22:33] 2025-10-13 23:21:43,289 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 19:22:33] 2025-10-13 23:21:43,290 | INFO     | log transfer has been attempted: DONE
[2025-10-13 19:22:33] 2025-10-13 23:21:43,290 | INFO     | job 6837344017 has finished - writing final server update
[2025-10-13 19:22:33] 2025-10-13 23:21:43,290 | INFO     | total number of processed events: 400 (read)
[2025-10-13 19:22:33] 2025-10-13 23:21:43,290 | INFO     | executing command: lscpu
[2025-10-13 19:22:33] 2025-10-13 23:21:43,353 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 19:22:33] 2025-10-13 23:21:44,107 | INFO     | monitor loop #245: job 0:6837344017 is in state 'finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:44,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:22:33] 2025-10-13 23:21:44,884 | INFO     | time since job start (3503s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:46,612 | INFO     | monitor loop #246: job 0:6837344017 is in state 'finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:46,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:22:33] 2025-10-13 23:21:46,891 | INFO     | time since job start (3505s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:48,897 | INFO     | time since job start (3507s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:49,122 | INFO     | monitor loop #247: job 0:6837344017 is in state 'finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:49,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:22:33] 2025-10-13 23:21:50,904 | INFO     | time since job start (3509s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:51,626 | INFO     | monitor loop #248: job 0:6837344017 is in state 'finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:51,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:22:33] 2025-10-13 23:21:52,915 | INFO     | time since job start (3511s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:54,138 | INFO     | monitor loop #249: job 0:6837344017 is in state 'finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:54,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:22:33] 2025-10-13 23:21:54,921 | INFO     | time since job start (3513s) is within the limit (172800.0s)
[2025-10-13 19:22:33] 2025-10-13 23:21:56,558 | INFO     | PID=4124220 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:22:33] 2025-10-13 23:21:56,558 | INFO     | .. there are 46 such processes running
[2025-10-13 19:22:33] 2025-10-13 23:21:56,643 | INFO     | monitor loop #250: job 0:6837344017 is in state 'finished'
[2025-10-13 19:22:33] 2025-10-13 23:21:56,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:22:33] 2025-10-13 23:21:56,971 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 19:22:33] 2025-10-13 23:21:56,984 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3746.7699062500005
[2025-10-13 19:22:33] 2025-10-13 23:21:57,000 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837344017/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 19:22:33] 2025-10-13 23:21:57,000 | INFO     | extracted standard info from prmon json
[2025-10-13 19:22:33] 2025-10-13 23:21:57,001 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 19:22:33] 2025-10-13 23:21:57,001 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 19:22:33] 2025-10-13 23:21:57,003 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 19:22:33] 2025-10-13 23:21:57,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 19:22:33] 2025-10-13 23:21:57,004 | INFO     | fitting pss+swap vs Time
[2025-10-13 19:22:33] 2025-10-13 23:21:57,004 | INFO     | sum of square deviations: 36465800.0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,004 | INFO     | sum of deviations: 580650887.0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,004 | INFO     | mean x: 1760396047.0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,004 | INFO     | mean y: 2347539.714285714
[2025-10-13 19:22:33] 2025-10-13 23:21:57,004 | INFO     | -- intersect: -28028726128.266224
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | intersect: -28028726128.266224
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | chi2: 0.011364417781506339
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | -- intersect: -28028726128.266224
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | current memory leak: 15.92 B/s (using 49 data points, chi2=0.01)
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | could have reported an average CPU frequency of 3749 MHz (5 samples)
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | ..............................
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . Timing measurements:
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . get job = 0 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . initial setup = 3 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . payload setup = 22 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . stage-in = 0 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . payload execution = 3433 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . stage-out = 0 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | . log creation = 0 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,005 | INFO     | ..............................
[2025-10-13 19:22:33] 2025-10-13 23:21:57,088 | INFO     | 
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | job summary report
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | --------------------------------------------------
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | PanDA job id: 6837344017
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | task id: 46676269
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | errors: (none)
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | pilot state: finished 
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | transexitcode: 0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | exeerrorcode: 0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | exeerrordiag: 
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | exitcode: 0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | exitmsg: OK
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | cpuconsumptiontime: 22564 s
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | nevents: 400
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | neventsw: 0
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | pid: 4151680
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | pgrp: 4151680
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | corecount: 9
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | event service: False
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | sizes: {0: 2348855, 11: 2348855, 14: 2349145, 22: 2349173, 3459: 2374874, 3461: 2383872, 3463: 2384056, 3479: 2384282}
[2025-10-13 19:22:33] 2025-10-13 23:21:57,090 | INFO     | --------------------------------------------------
[2025-10-13 19:22:33] 2025-10-13 23:21:57,091 | INFO     | 
[2025-10-13 19:22:33] 2025-10-13 23:21:57,091 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 19:22:33] 2025-10-13 23:21:57,107 | INFO     | job 6837344017 has completed (purged errors)
[2025-10-13 19:22:33] 2025-10-13 23:21:57,108 | INFO     | overall cleanup function is called
[2025-10-13 19:22:33] 2025-10-13 23:21:58,115 | INFO     | --- collectZombieJob: --- 10, [4151680]
[2025-10-13 19:22:33] 2025-10-13 23:21:58,115 | INFO     | zombie collector waiting for pid 4151680
[2025-10-13 19:22:33] 2025-10-13 23:21:58,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 19:22:33] 2025-10-13 23:21:58,115 | INFO     | collected zombie processes
[2025-10-13 19:22:33] 2025-10-13 23:21:58,115 | INFO     | will attempt to kill all subprocesses of pid=4151680
[2025-10-13 19:22:33] 2025-10-13 23:21:58,527 | INFO     | process IDs to be killed: [4151680] (in reverse order)
[2025-10-13 19:22:33] 2025-10-13 23:21:58,677 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 19:22:33] 2025-10-13 23:21:58,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 19:22:33] 2025-10-13 23:21:58,721 | INFO     | did not find any defunct processes belonging to 4151680
[2025-10-13 19:22:33] 2025-10-13 23:21:58,757 | INFO     | did not find any defunct processes belonging to 4151680
[2025-10-13 19:22:33] 2025-10-13 23:21:58,757 | INFO     | ready for new job
[2025-10-13 19:22:33] 2025-10-13 23:21:58,758 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 19:22:33] 2025-10-13 23:21:58,759 | INFO     | ***************************************
[2025-10-13 19:22:33] 2025-10-13 23:21:58,759 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 19:22:33] 2025-10-13 23:21:58,759 | INFO     | ***************************************
[2025-10-13 19:22:33] 2025-10-13 23:21:58,759 | INFO     | 
[2025-10-13 19:22:33] 2025-10-13 23:21:58,778 | INFO     | architecture information:
[2025-10-13 19:22:33] 2025-10-13 23:21:58,779 | INFO     | executing command: cat /etc/os-release
[2025-10-13 19:22:33] 2025-10-13 23:21:58,797 | INFO     | cat /etc/os-release:
[2025-10-13 19:22:33] NAME="CentOS Linux"
[2025-10-13 19:22:33] VERSION="7 (Core)"
[2025-10-13 19:22:33] ID="centos"
[2025-10-13 19:22:33] ID_LIKE="rhel fedora"
[2025-10-13 19:22:33] VERSION_ID="7"
[2025-10-13 19:22:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 19:22:33] ANSI_COLOR="0;31"
[2025-10-13 19:22:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 19:22:33] HOME_URL="https://www.centos.org/"
[2025-10-13 19:22:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 19:22:33] 
[2025-10-13 19:22:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 19:22:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 19:22:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 19:22:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 19:22:33] 
[2025-10-13 19:22:33] 2025-10-13 23:21:58,798 | INFO     | ***************************************
[2025-10-13 19:22:33] 2025-10-13 23:21:59,301 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 19:22:33] 2025-10-13 23:21:59,384 | INFO     | sufficient remaining disk space (75408343040 B)
[2025-10-13 19:22:33] 2025-10-13 23:21:59,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 19:22:33] 2025-10-13 23:21:59,384 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 19:22:33] 2025-10-13 23:21:59,384 | INFO     | update_server=False
[2025-10-13 19:22:33] 2025-10-13 23:21:59,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 19:22:33] 2025-10-13 23:21:59,423 | INFO     | all job control threads have been joined
[2025-10-13 19:22:33] 2025-10-13 23:22:00,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:22:33] 2025-10-13 23:22:00,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:22:33] 2025-10-13 23:22:00,154 | INFO     | aborting loop
[2025-10-13 19:22:33] 2025-10-13 23:22:00,295 | INFO     | all data control threads have been joined
[2025-10-13 19:22:33] 2025-10-13 23:22:00,390 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:00,429 | INFO     | [job] control thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:00,494 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:00,619 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:00,741 | INFO     | all payload control threads have been joined
[2025-10-13 19:22:33] 2025-10-13 23:22:00,807 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:00,964 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:00,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:22:33] 2025-10-13 23:22:00,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:01,160 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:01,301 | INFO     | [data] control thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:01,493 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:01,590 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:01,748 | INFO     | [payload] control thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:01,783 | INFO     | [job] validate thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:02,029 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:02,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:22:33] 2025-10-13 23:22:03,101 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:04,989 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:22:33] 2025-10-13 23:22:27,378 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:22:33] 2025-10-13 23:22:28,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698108016448)>', '<ExcThread(monitor, started 139697628112640)>']
[2025-10-13 19:22:33] 2025-10-13 23:22:29,084 | INFO     | PID=4124220 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:22:33] 2025-10-13 23:22:29,085 | INFO     | .. there are 45 such processes running
[2025-10-13 19:22:33] 2025-10-13 23:22:29,085 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:22:33] 2025-10-13 23:22:29,085 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:22:33] 2025-10-13 23:22:29,085 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:22:33] 2025-10-13 23:22:29,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:22:33] 2025-10-13 23:22:29,085 | INFO     | [monitor] control thread has ended
[2025-10-13 19:22:33] 2025-10-13 23:22:33,075 | INFO     | all workflow threads have been joined
[2025-10-13 19:22:33] 2025-10-13 23:22:33,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:22:33] 2025-10-13 23:22:33,075 | INFO     | traces error code: 0
[2025-10-13 19:22:33] 2025-10-13 23:22:33,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:22:33] 2025-10-13 23:22:33,163 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:22:33] 2025-10-13 23:22:33,165 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:22:33] 2025-10-13 23:22:33,168 [wrapper] pilotpid: 4124220
[2025-10-13 19:22:33] 2025-10-13 23:22:33,172 [wrapper] Pilot exit status: 0
[2025-10-13 19:22:33] 2025-10-13 23:22:33,191 [wrapper] pandaids: 6837344017
[2025-10-13 19:22:33] 2025-10-13 23:22:33,284 [wrapper] cleanup supervisor_pilot  660617 4124222
[2025-10-13 19:22:33] 2025-10-13 23:22:33,288 [wrapper] Test setup, not cleaning
[2025-10-13 19:22:33] 2025-10-13 23:22:33,290 [wrapper] apfmon messages muted
[2025-10-13 19:22:33] 2025-10-13 23:22:33,300 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:22:33] 2025-10-13 23:22:33,309 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:22:33]  *** Error codes and diagnostics ***
[2025-10-13 19:22:33]     "exeErrorCode": 0,
[2025-10-13 19:22:33]     "exeErrorDiag": "",
[2025-10-13 19:22:33]     "pilotErrorCode": 0,
[2025-10-13 19:22:33]     "pilotErrorDiag": "",
[2025-10-13 19:22:33]  *** Listing of results directory ***
[2025-10-13 19:22:33] total 408872
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 09:21 pilot3.tar.gz
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 09:30 queuedata.json
[2025-10-13 19:22:33] -rwx------. 1 boincer umatlas     36292 Oct  9 09:31 runpilot2-wrapper.sh
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas       100 Oct 13 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:22:33] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 18:22 run_atlas
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas       105 Oct 13 18:22 job.xml
[2025-10-13 19:22:33] -rw-r--r--. 2 boincer umatlas 219556147 Oct 13 18:22 EVNT.46676267._000778.pool.root.1
[2025-10-13 19:22:33] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 18:22 start_atlas.sh
[2025-10-13 19:22:33] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 18:22 shared
[2025-10-13 19:22:33] -rw-r--r--. 2 boincer umatlas    569681 Oct 13 18:22 input.tar.gz
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas         0 Oct 13 18:22 boinc_lockfile
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 18:22 pandaJob.out
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas    972799 Oct 13 18:23 agis_schedconf.cvmfs.json
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas   1560580 Oct 13 18:23 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:22:33] drwx------. 5 boincer umatlas      4096 Oct 13 18:23 pilot3
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas      7160 Oct 13 19:18 init_data.xml
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas 193549550 Oct 13 19:21 HITS.46676269._018791.pool.root.1
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas       529 Oct 13 19:21 boinc_task_state.xml
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas      1035 Oct 13 19:21 memory_monitor_summary.json
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas    325488 Oct 13 19:21 log.46676269._018791.job.log.tgz.1
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas      7776 Oct 13 19:21 heartbeat.json
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas        95 Oct 13 19:22 pilot_heartbeat.json
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 19:22 boinc_mmap_file
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas        27 Oct 13 19:22 wrapper_checkpoint.txt
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas      4824 Oct 13 19:22 pilotlog.txt
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas    514344 Oct 13 19:22 log.46676269._018791.job.log.1
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas       357 Oct 13 19:22 output.list
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas       620 Oct 13 19:22 runtime_log
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas    860160 Oct 13 19:22 result.tar.gz
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 19:22 runtime_log.err
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas       651 Oct 13 19:22 JsBODmnu5Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmM8ZNDmN4LdDo.diag
[2025-10-13 19:22:33] -rw-r--r--. 1 boincer umatlas     22303 Oct 13 19:22 stderr.txt
[2025-10-13 19:22:33] HITS file was successfully produced:
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas 193549550 Oct 13 19:21 shared/HITS.pool.root.1
[2025-10-13 19:22:33]  *** Contents of shared directory: ***
[2025-10-13 19:22:33] total 404848
[2025-10-13 19:22:33] -rw-r--r--. 2 boincer umatlas 219556147 Oct 13 18:22 ATLAS.root_0
[2025-10-13 19:22:33] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 18:22 start_atlas.sh
[2025-10-13 19:22:33] -rw-r--r--. 2 boincer umatlas    569681 Oct 13 18:22 input.tar.gz
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas 193549550 Oct 13 19:21 HITS.pool.root.1
[2025-10-13 19:22:33] -rw-------. 1 boincer umatlas    860160 Oct 13 19:22 result.tar.gz
19:22:34 (4113264): run_atlas exited; CPU time 22640.685108
19:22:34 (4113264): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN