Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:06:59 (3661024): wrapper (7.7.26015): starting
18:06:59 (3661024): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 18:06:59] Arguments: --nthreads 9
[2025-10-13 18:06:59] Threads: 9
[2025-10-13 18:06:59] Checking for CVMFS
[2025-10-13 18:06:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 18:06:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 18:06:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 18:07:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 18:07:00] 2.13.2.0 999403 131263 255344 151675 3 13 20501611 32935936 14037 16776704 0 193205544 99.558 229258697 29084 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 18:07:00] CVMFS is ok
[2025-10-13 18:07:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 18:07:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 18:07:00] Further information can be found at the LHC@home message board.
[2025-10-13 18:07:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 18:07:00] Checking for apptainer binary...
[2025-10-13 18:07:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 18:07:00] Running /usr/bin/apptainer --version
[2025-10-13 18:07:00] apptainer version 1.4.3-1.el9
[2025-10-13 18:07:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 18:07:00] c6-2-29-4.aglt2.org
[2025-10-13 18:07:00] apptainer works
[2025-10-13 18:07:00] Set ATHENA_PROC_NUMBER=9
[2025-10-13 18:07:00] Set ATHENA_CORE_NUMBER=9
[2025-10-13 18:07:00] Starting ATLAS job with PandaID=6831880667
[2025-10-13 18:07:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:35:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:35:29]  status_code=0
[2025-10-13 19:35:29]  storage_token=
[2025-10-13 19:35:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831880667/log.46376905._093210.job.log.tgz.1
[2025-10-13 19:35:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/81/log.46376905._093210.job.log.tgz.1
[2025-10-13 19:35:29]  workdir=None
[2025-10-13 19:35:29] ]
[2025-10-13 19:35:29] 2025-10-13 23:34:49,244 | INFO     | transferring file log.46376905._093210.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831880667/log.46376905._093210.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 19:35:29] 2025-10-13 23:34:49,244 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831880667/log.46376905._093210.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._093210.job
[2025-10-13 19:35:29] 2025-10-13 23:34:49,267 | INFO     | adding to output.list: log.46376905._093210.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/81/log.46376905._093210.job.log.tg
[2025-10-13 19:35:29] 2025-10-13 23:34:49,268 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 19:35:29] 2025-10-13 23:34:49,268 | INFO     | summary of transferred files:
[2025-10-13 19:35:29] 2025-10-13 23:34:49,268 | INFO     |  -- lfn=log.46376905._093210.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 19:35:29] 2025-10-13 23:34:49,268 | INFO     | stage-out finished correctly
[2025-10-13 19:35:29] 2025-10-13 23:34:49,668 | INFO     | time since job start (5255s) is within the limit (172800.0s)
[2025-10-13 19:35:29] 2025-10-13 23:34:49,890 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 19:35:29] 2025-10-13 23:34:51,484 | INFO     | monitor loop #358: job 0:6831880667 is in state 'finished'
[2025-10-13 19:35:29] 2025-10-13 23:34:51,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:35:29] 2025-10-13 23:34:51,674 | INFO     | time since job start (5257s) is within the limit (172800.0s)
[2025-10-13 19:35:29] 2025-10-13 23:34:51,894 | INFO     | job 6831880667 has state=finished
[2025-10-13 19:35:29] 2025-10-13 23:34:51,895 | INFO     | preparing for final server update for job 6831880667 in state='finished'
[2025-10-13 19:35:29] 2025-10-13 23:34:51,964 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 19:35:29] 2025-10-13 23:34:51,964 | INFO     | this job has now completed (state=finished)
[2025-10-13 19:35:29] 2025-10-13 23:34:51,964 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 19:35:29] 2025-10-13 23:34:51,965 | INFO     | log transfer has been attempted: DONE
[2025-10-13 19:35:29] 2025-10-13 23:34:51,965 | INFO     | job 6831880667 has finished - writing final server update
[2025-10-13 19:35:29] 2025-10-13 23:34:51,965 | INFO     | total number of processed events: 400 (read)
[2025-10-13 19:35:29] 2025-10-13 23:34:51,966 | INFO     | executing command: lscpu
[2025-10-13 19:35:29] 2025-10-13 23:34:52,035 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 19:35:29] 2025-10-13 23:34:53,679 | INFO     | time since job start (5259s) is within the limit (172800.0s)
[2025-10-13 19:35:29] 2025-10-13 23:34:53,991 | INFO     | monitor loop #359: job 0:6831880667 is in state 'finished'
[2025-10-13 19:35:29] 2025-10-13 23:34:53,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:35:29] 2025-10-13 23:34:55,684 | INFO     | time since job start (5261s) is within the limit (172800.0s)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,495 | INFO     | monitor loop #360: job 0:6831880667 is in state 'finished'
[2025-10-13 19:35:29] 2025-10-13 23:34:56,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,647 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 19:35:29] 2025-10-13 23:34:56,655 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2749.159821428572
[2025-10-13 19:35:29] 2025-10-13 23:34:56,665 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831880667/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,665 | INFO     | extracted standard info from prmon json
[2025-10-13 19:35:29] 2025-10-13 23:34:56,666 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 19:35:29] 2025-10-13 23:34:56,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 19:35:29] 2025-10-13 23:34:56,666 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 19:35:29] 2025-10-13 23:34:56,666 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 19:35:29] 2025-10-13 23:34:56,668 | INFO     | fitting pss+swap vs Time
[2025-10-13 19:35:29] 2025-10-13 23:34:56,669 | INFO     | sum of square deviations: 152851610.3797471
[2025-10-13 19:35:29] 2025-10-13 23:34:56,669 | INFO     | sum of deviations: -878064632.1392404
[2025-10-13 19:35:29] 2025-10-13 23:34:56,669 | INFO     | mean x: 1760395947.0886075
[2025-10-13 19:35:29] 2025-10-13 23:34:56,669 | INFO     | mean y: 2235484.734177215
[2025-10-13 19:35:29] 2025-10-13 23:34:56,670 | INFO     | -- intersect: 10114928546.060139
[2025-10-13 19:35:29] 2025-10-13 23:34:56,670 | INFO     | intersect: 10114928546.060139
[2025-10-13 19:35:29] 2025-10-13 23:34:56,670 | INFO     | chi2: 0.0517109435734119
[2025-10-13 19:35:29] 2025-10-13 23:34:56,670 | INFO     | -- intersect: 10114928546.060139
[2025-10-13 19:35:29] 2025-10-13 23:34:56,670 | INFO     | current memory leak: -5.74 B/s (using 79 data points, chi2=0.05)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,670 | INFO     | could have reported an average CPU frequency of 2728 MHz (6 samples)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | ..............................
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . Timing measurements:
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . get job = 0 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . initial setup = 3 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . payload setup = 6 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . stage-in = 0 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . payload execution = 5227 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . stage-out = 0 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | . log creation = 0 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,671 | INFO     | ..............................
[2025-10-13 19:35:29] 2025-10-13 23:34:56,793 | INFO     | 
[2025-10-13 19:35:29] 2025-10-13 23:34:56,793 | INFO     | job summary report
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | --------------------------------------------------
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | PanDA job id: 6831880667
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | task id: 46376905
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | errors: (none)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | pilot state: finished 
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | transexitcode: 0
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | exeerrorcode: 0
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | exeerrordiag: 
[2025-10-13 19:35:29] 2025-10-13 23:34:56,794 | INFO     | exitcode: 0
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | exitmsg: OK
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | cpuconsumptiontime: 37608 s
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | nevents: 400
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | neventsw: 0
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | pid: 3671174
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | pgrp: 3671174
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | corecount: 9
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | event service: False
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | sizes: {0: 2348645, 1: 2348844, 6: 2349106, 12: 2349134, 5237: 2375608, 5238: 2384606, 5239: 2384790, 5246: 2384984}
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | --------------------------------------------------
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | 
[2025-10-13 19:35:29] 2025-10-13 23:34:56,795 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 19:35:29] 2025-10-13 23:34:56,820 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,821 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,821 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,821 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,823 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,823 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 19:35:29] 2025-10-13 23:34:56,824 | INFO     | job 6831880667 has completed (purged errors)
[2025-10-13 19:35:29] 2025-10-13 23:34:56,824 | INFO     | overall cleanup function is called
[2025-10-13 19:35:29] 2025-10-13 23:34:57,832 | INFO     | --- collectZombieJob: --- 10, [3671174]
[2025-10-13 19:35:29] 2025-10-13 23:34:57,833 | INFO     | zombie collector waiting for pid 3671174
[2025-10-13 19:35:29] 2025-10-13 23:34:57,833 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 19:35:29] 2025-10-13 23:34:57,834 | INFO     | collected zombie processes
[2025-10-13 19:35:29] 2025-10-13 23:34:57,834 | INFO     | will attempt to kill all subprocesses of pid=3671174
[2025-10-13 19:35:29] 2025-10-13 23:34:58,157 | INFO     | process IDs to be killed: [3671174] (in reverse order)
[2025-10-13 19:35:29] 2025-10-13 23:34:58,271 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 19:35:29] 2025-10-13 23:34:58,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 19:35:29] 2025-10-13 23:34:58,282 | INFO     | did not find any defunct processes belonging to 3671174
[2025-10-13 19:35:29] 2025-10-13 23:34:58,294 | INFO     | did not find any defunct processes belonging to 3671174
[2025-10-13 19:35:29] 2025-10-13 23:34:58,294 | INFO     | ready for new job
[2025-10-13 19:35:29] 2025-10-13 23:34:58,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 19:35:29] 2025-10-13 23:34:58,297 | INFO     | ***************************************
[2025-10-13 19:35:29] 2025-10-13 23:34:58,298 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 19:35:29] 2025-10-13 23:34:58,298 | INFO     | ***************************************
[2025-10-13 19:35:29] 2025-10-13 23:34:58,298 | INFO     | 
[2025-10-13 19:35:29] 2025-10-13 23:34:58,314 | INFO     | architecture information:
[2025-10-13 19:35:29] 2025-10-13 23:34:58,315 | INFO     | executing command: cat /etc/os-release
[2025-10-13 19:35:29] 2025-10-13 23:34:58,332 | INFO     | cat /etc/os-release:
[2025-10-13 19:35:29] NAME="CentOS Linux"
[2025-10-13 19:35:29] VERSION="7 (Core)"
[2025-10-13 19:35:29] ID="centos"
[2025-10-13 19:35:29] ID_LIKE="rhel fedora"
[2025-10-13 19:35:29] VERSION_ID="7"
[2025-10-13 19:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 19:35:29] ANSI_COLOR="0;31"
[2025-10-13 19:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 19:35:29] HOME_URL="https://www.centos.org/"
[2025-10-13 19:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 19:35:29] 
[2025-10-13 19:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 19:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 19:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 19:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 19:35:29] 
[2025-10-13 19:35:29] 2025-10-13 23:34:58,332 | INFO     | ***************************************
[2025-10-13 19:35:29] 2025-10-13 23:34:58,835 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 19:35:29] 2025-10-13 23:34:58,853 | INFO     | sufficient remaining disk space (76550242304 B)
[2025-10-13 19:35:29] 2025-10-13 23:34:58,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 19:35:29] 2025-10-13 23:34:58,854 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 19:35:29] 2025-10-13 23:34:58,854 | INFO     | update_server=False
[2025-10-13 19:35:29] 2025-10-13 23:34:58,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 19:35:29] 2025-10-13 23:34:58,998 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 19:35:29] 2025-10-13 23:34:58,999 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 19:35:29] 2025-10-13 23:34:58,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:35:29] 2025-10-13 23:34:58,999 | INFO     | will abort loop
[2025-10-13 19:35:29] 2025-10-13 23:34:59,427 | INFO     | all data control threads have been joined
[2025-10-13 19:35:29] 2025-10-13 23:34:59,428 | INFO     | all payload control threads have been joined
[2025-10-13 19:35:29] 2025-10-13 23:34:59,435 | INFO     | all job control threads have been joined
[2025-10-13 19:35:29] 2025-10-13 23:34:59,859 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:34:59,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 19:35:29] 2025-10-13 23:35:00,004 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,372 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,376 | INFO     | [job] validate thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,411 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,432 | INFO     | [data] control thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,433 | INFO     | [payload] control thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,440 | INFO     | [job] control thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,462 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 19:35:29] 2025-10-13 23:35:00,509 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:00,750 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:01,085 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:01,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:01,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 19:35:29] 2025-10-13 23:35:01,873 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:02,777 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:04,515 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:35:29] 2025-10-13 23:35:22,455 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:35:29] 2025-10-13 23:35:23,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657446754112)>', '<ExcThread(monitor, started 139656817530624)>']
[2025-10-13 19:35:29] 2025-10-13 23:35:28,663 | INFO     | all workflow threads have been joined
[2025-10-13 19:35:29] 2025-10-13 23:35:28,664 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:35:29] 2025-10-13 23:35:28,664 | INFO     | traces error code: 0
[2025-10-13 19:35:29] 2025-10-13 23:35:28,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:35:29] 2025-10-13 23:35:29,129 | INFO     | PID=3664704 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 19:35:29] 2025-10-13 23:35:29,130 | INFO     | .. there are 13 such processes running
[2025-10-13 19:35:29] 2025-10-13 23:35:29,131 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:35:29] 2025-10-13 23:35:29,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:35:29] 2025-10-13 23:35:29,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:35:29] 2025-10-13 23:35:29,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:35:29] 2025-10-13 23:35:29,131 | INFO     | [monitor] control thread has ended
[2025-10-13 19:35:29] 2025-10-13 23:35:29,354 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:35:29] 2025-10-13 23:35:29,358 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:35:29] 2025-10-13 23:35:29,361 [wrapper] pilotpid: 3664704
[2025-10-13 19:35:29] 2025-10-13 23:35:29,366 [wrapper] Pilot exit status: 0
[2025-10-13 19:35:29] 2025-10-13 23:35:29,378 [wrapper] pandaids: 6831880667
[2025-10-13 19:35:29] 2025-10-13 23:35:29,437 [wrapper] cleanup supervisor_pilot 3845106 3664705
[2025-10-13 19:35:29] 2025-10-13 23:35:29,441 [wrapper] Test setup, not cleaning
[2025-10-13 19:35:29] 2025-10-13 23:35:29,444 [wrapper] apfmon messages muted
[2025-10-13 19:35:29] 2025-10-13 23:35:29,449 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:35:29] 2025-10-13 23:35:29,453 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:35:29]  *** Error codes and diagnostics ***
[2025-10-13 19:35:29]     "exeErrorCode": 0,
[2025-10-13 19:35:29]     "exeErrorDiag": "",
[2025-10-13 19:35:29]     "pilotErrorCode": 0,
[2025-10-13 19:35:29]     "pilotErrorDiag": "",
[2025-10-13 19:35:29]  *** Listing of results directory ***
[2025-10-13 19:35:29] total 393964
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 14:48 pilot3.tar.gz
[2025-10-13 19:35:29] -rwx------. 1 boincer umatlas     36292 Oct  5 15:01 runpilot2-wrapper.sh
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 15:01 queuedata.json
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas       100 Oct 13 18:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:35:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 18:06 run_atlas
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas       105 Oct 13 18:06 job.xml
[2025-10-13 19:35:29] -rw-r--r--. 2 boincer umatlas 217507430 Oct 13 18:06 EVNT.46376901._003433.pool.root.1
[2025-10-13 19:35:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 18:06 start_atlas.sh
[2025-10-13 19:35:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 18:06 shared
[2025-10-13 19:35:29] -rw-r--r--. 2 boincer umatlas    565599 Oct 13 18:06 input.tar.gz
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas         0 Oct 13 18:06 boinc_lockfile
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas      2519 Oct 13 18:07 pandaJob.out
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas    972791 Oct 13 18:07 agis_schedconf.cvmfs.json
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas   1560580 Oct 13 18:07 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:35:29] drwx------. 4 boincer umatlas      4096 Oct 13 18:07 pilot3
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas      6841 Oct 13 19:29 init_data.xml
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas 179835011 Oct 13 19:34 HITS.46376905._093210.pool.root.1
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas       529 Oct 13 19:34 boinc_task_state.xml
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas      1047 Oct 13 19:34 memory_monitor_summary.json
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas    358577 Oct 13 19:34 log.46376905._093210.job.log.tgz.1
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas      7818 Oct 13 19:34 heartbeat.json
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas        27 Oct 13 19:35 wrapper_checkpoint.txt
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 19:35 boinc_mmap_file
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas        95 Oct 13 19:35 pilot_heartbeat.json
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas       823 Oct 13 19:35 pilotlog.txt
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas    734823 Oct 13 19:35 log.46376905._093210.job.log.1
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas       357 Oct 13 19:35 output.list
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas       620 Oct 13 19:35 runtime_log
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas   1116160 Oct 13 19:35 result.tar.gz
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas       654 Oct 13 19:35 Yo0LDmw9iP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbiQNDmosCAEo.diag
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas      8708 Oct 13 19:35 runtime_log.err
[2025-10-13 19:35:29] -rw-r--r--. 1 boincer umatlas     22118 Oct 13 19:35 stderr.txt
[2025-10-13 19:35:29] HITS file was successfully produced:
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas 179835011 Oct 13 19:34 shared/HITS.pool.root.1
[2025-10-13 19:35:29]  *** Contents of shared directory: ***
[2025-10-13 19:35:29] total 389704
[2025-10-13 19:35:29] -rw-r--r--. 2 boincer umatlas 217507430 Oct 13 18:06 ATLAS.root_0
[2025-10-13 19:35:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 18:06 start_atlas.sh
[2025-10-13 19:35:29] -rw-r--r--. 2 boincer umatlas    565599 Oct 13 18:06 input.tar.gz
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas 179835011 Oct 13 19:34 HITS.pool.root.1
[2025-10-13 19:35:29] -rw-------. 1 boincer umatlas   1116160 Oct 13 19:35 result.tar.gz
19:35:31 (3661024): run_atlas exited; CPU time 37717.662462
19:35:31 (3661024): called boinc_finish(0)

</stderr_txt>
]]>

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