Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:15:57 (3569281): wrapper (7.7.26015): starting
22:15:57 (3569281): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 22:15:57] Arguments: --nthreads 9
[2025-10-13 22:15:57] Threads: 9
[2025-10-13 22:15:57] Checking for CVMFS
[2025-10-13 22:15:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 22:15:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 22:15:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 22:15:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 22:15:58] 2.13.2.0 4499 52536 121568 151681 0 64 27260087 40960001 9704 16776704 0 44984236 99.787 25493363 37745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 22:15:58] CVMFS is ok
[2025-10-13 22:15:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 22:15:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 22:15:58] Further information can be found at the LHC@home message board.
[2025-10-13 22:15:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 22:15:58] Checking for apptainer binary...
[2025-10-13 22:15:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 22:15:58] Running /usr/bin/apptainer --version
[2025-10-13 22:16:01] apptainer version 1.4.3-1.el9
[2025-10-13 22:16:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 22:16:01] c-211-8.aglt2.org
[2025-10-13 22:16:01] apptainer works
[2025-10-13 22:16:01] Set ATHENA_PROC_NUMBER=9
[2025-10-13 22:16:01] Set ATHENA_CORE_NUMBER=9
[2025-10-13 22:16:01] Starting ATLAS job with PandaID=6840225785
[2025-10-13 22:16:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:03:49 (3676469): wrapper (7.7.26015): starting
23:03:49 (3676469): wrapper: running run_atlas (--nthreads 11)
[2025-10-13 23:03:49] Arguments: --nthreads 11
[2025-10-13 23:03:49] Threads: 11
[2025-10-13 23:03:49] This job has been restarted, cleaning up previous attempt
[2025-10-13 23:03:49] Checking for CVMFS
[2025-10-13 23:03:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 23:03:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 23:03:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 23:03:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 23:03:49] 2.13.2.0 4499 52583 137696 151681 0 460 27319398 40960001 8198 16776704 0 45097280 99.787 25498856 37746 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 23:03:49] CVMFS is ok
[2025-10-13 23:03:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 23:03:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 23:03:49] Further information can be found at the LHC@home message board.
[2025-10-13 23:03:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 23:03:49] Checking for apptainer binary...
[2025-10-13 23:03:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 23:03:49] Running /usr/bin/apptainer --version
[2025-10-13 23:03:50] apptainer version 1.4.3-1.el9
[2025-10-13 23:03:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 23:03:50] c-211-8.aglt2.org
[2025-10-13 23:03:50] apptainer works
[2025-10-13 23:03:50] Set ATHENA_PROC_NUMBER=11
[2025-10-13 23:03:50] Set ATHENA_CORE_NUMBER=11
[2025-10-13 23:03:50] Starting ATLAS job with PandaID=6840225785
[2025-10-13 23:03:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 10:05:28]  *** The last 200 lines of the pilot log: ***
[2025-10-14 10:05:28] 2025-10-14 14:04:37,632 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 10:05:28] 2025-10-14 14:04:37,632 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 10:05:28] 2025-10-14 14:04:37,712 | INFO     | fitting pss+swap vs Time
[2025-10-14 10:05:28] 2025-10-14 14:04:37,744 | INFO     | sum of square deviations: 84760198211.15558
[2025-10-14 10:05:28] 2025-10-14 14:04:37,834 | INFO     | sum of deviations: 223794599503.72824
[2025-10-14 10:05:28] 2025-10-14 14:04:37,834 | INFO     | mean x: 1760430851.2249615
[2025-10-14 10:05:28] 2025-10-14 14:04:37,834 | INFO     | mean y: 2621978.1525423727
[2025-10-14 10:05:28] 2025-10-14 14:04:37,835 | INFO     | -- intersect: -4645490291.741198
[2025-10-14 10:05:28] 2025-10-14 14:04:37,835 | INFO     | intersect: -4645490291.741198
[2025-10-14 10:05:28] 2025-10-14 14:04:37,836 | INFO     | chi2: 4.228917382842372
[2025-10-14 10:05:28] 2025-10-14 14:04:37,838 | INFO     | sum of square deviations: 82816346280.06226
[2025-10-14 10:05:28] 2025-10-14 14:04:37,855 | INFO     | sum of deviations: 311188448910.31696
[2025-10-14 10:05:28] 2025-10-14 14:04:37,855 | INFO     | mean x: 1760430698.7329192
[2025-10-14 10:05:28] 2025-10-14 14:04:37,855 | INFO     | mean y: 2628801.4378881985
[2025-10-14 10:05:28] 2025-10-14 14:04:37,856 | INFO     | -- intersect: -6612317681.472693
[2025-10-14 10:05:28] 2025-10-14 14:04:37,856 | INFO     | intersect: -6612317681.472693
[2025-10-14 10:05:28] 2025-10-14 14:04:37,857 | INFO     | chi2: 2.7366558579356
[2025-10-14 10:05:28] 2025-10-14 14:04:37,857 | INFO     | current chi2=2.7366558579356 (change=35.2870815344182 %)
[2025-10-14 10:05:28] 2025-10-14 14:04:37,859 | INFO     | sum of square deviations: 80902448398.88596
[2025-10-14 10:05:28] 2025-10-14 14:04:37,873 | INFO     | sum of deviations: 307781547285.7947
[2025-10-14 10:05:28] 2025-10-14 14:04:37,874 | INFO     | mean x: 1760430546.2410016
[2025-10-14 10:05:28] 2025-10-14 14:04:37,874 | INFO     | mean y: 2628530.007824726
[2025-10-14 10:05:28] 2025-10-14 14:04:37,874 | INFO     | -- intersect: -6694672332.133862
[2025-10-14 10:05:28] 2025-10-14 14:04:37,874 | INFO     | intersect: -6694672332.133862
[2025-10-14 10:05:28] 2025-10-14 14:04:37,875 | INFO     | chi2: 2.7367045086840576
[2025-10-14 10:05:28] 2025-10-14 14:04:37,876 | INFO     | current chi2=2.7367045086840576 (change=-0.0017777444802318091 %)
[2025-10-14 10:05:28] 2025-10-14 14:04:37,876 | INFO     | right removable region: 638
[2025-10-14 10:05:28] 2025-10-14 14:04:37,877 | INFO     | sum of square deviations: 82815900673.59454
[2025-10-14 10:05:28] 2025-10-14 14:04:37,892 | INFO     | sum of deviations: 48469599530.39907
[2025-10-14 10:05:28] 2025-10-14 14:04:37,892 | INFO     | mean x: 1760431003.734472
[2025-10-14 10:05:28] 2025-10-14 14:04:37,893 | INFO     | mean y: 2635708.364906832
[2025-10-14 10:05:28] 2025-10-14 14:04:37,893 | INFO     | -- intersect: -1027690413.2842727
[2025-10-14 10:05:28] 2025-10-14 14:04:37,893 | INFO     | intersect: -1027690413.2842727
[2025-10-14 10:05:28] 2025-10-14 14:04:37,894 | INFO     | chi2: 1.610977165227684
[2025-10-14 10:05:28] 2025-10-14 14:04:37,894 | INFO     | current chi2=1.610977165227684 (change=61.90568366826542 %)
[2025-10-14 10:05:28] 2025-10-14 14:04:37,896 | INFO     | sum of square deviations: 80901557185.91565
[2025-10-14 10:05:28] 2025-10-14 14:04:37,912 | INFO     | sum of deviations: 31389995892.347404
[2025-10-14 10:05:28] 2025-10-14 14:04:37,912 | INFO     | mean x: 1760431156.2441316
[2025-10-14 10:05:28] 2025-10-14 14:04:37,913 | INFO     | mean y: 2637061.625978091
[2025-10-14 10:05:28] 2025-10-14 14:04:37,913 | INFO     | -- intersect: -680414398.51185
[2025-10-14 10:05:28] 2025-10-14 14:04:37,913 | INFO     | intersect: -680414398.51185
[2025-10-14 10:05:28] 2025-10-14 14:04:37,914 | INFO     | chi2: 1.5564365203815231
[2025-10-14 10:05:28] 2025-10-14 14:04:37,914 | INFO     | current chi2=1.5564365203815231 (change=3.385562875961222 %)
[2025-10-14 10:05:28] 2025-10-14 14:04:37,914 | INFO     | left removable region: 20
[2025-10-14 10:05:28] 2025-10-14 14:04:37,916 | INFO     | sum of square deviations: 73184575906.9793
[2025-10-14 10:05:28] 2025-10-14 14:04:37,929 | INFO     | sum of deviations: 101412925805.01451
[2025-10-14 10:05:28] 2025-10-14 14:04:37,929 | INFO     | mean x: 1760431125.7653723
[2025-10-14 10:05:28] 2025-10-14 14:04:37,929 | INFO     | mean y: 2645225.3932038834
[2025-10-14 10:05:28] 2025-10-14 14:04:37,930 | INFO     | -- intersect: -2436809658.7753086
[2025-10-14 10:05:28] 2025-10-14 14:04:37,930 | INFO     | intersect: -2436809658.7753086
[2025-10-14 10:05:28] 2025-10-14 14:04:37,931 | INFO     | chi2: 0.027421338450101404
[2025-10-14 10:05:28] 2025-10-14 14:04:37,950 | INFO     | -- intersect: -2436809658.7753086
[2025-10-14 10:05:28] 2025-10-14 14:04:37,951 | INFO     | current memory leak: 1.39 B/s (using 618 data points, chi2=0.03)
[2025-10-14 10:05:28] 2025-10-14 14:04:37,952 | INFO     | could have reported an average CPU frequency of 2494 MHz (25 samples)
[2025-10-14 10:05:28] 2025-10-14 14:04:37,952 | INFO     | ..............................
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . Timing measurements:
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . get job = 0 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . initial setup = 1 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . payload setup = 18 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . stage-in = 0 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . payload execution = 39565 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,953 | INFO     | . stage-out = 6 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,977 | INFO     | . log creation = 2 s
[2025-10-14 10:05:28] 2025-10-14 14:04:37,977 | INFO     | ..............................
[2025-10-14 10:05:28] 2025-10-14 14:04:38,707 | INFO     | 
[2025-10-14 10:05:28] 2025-10-14 14:04:38,707 | INFO     | job summary report
[2025-10-14 10:05:28] 2025-10-14 14:04:38,707 | INFO     | --------------------------------------------------
[2025-10-14 10:05:28] 2025-10-14 14:04:38,707 | INFO     | PanDA job id: 6840225785
[2025-10-14 10:05:28] 2025-10-14 14:04:38,707 | INFO     | task id: 46676269
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | errors: (none)
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | pilot state: finished 
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | transexitcode: 0
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | exeerrorcode: 0
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | exeerrordiag: 
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | exitcode: 0
[2025-10-14 10:05:28] 2025-10-14 14:04:38,708 | INFO     | exitmsg: OK
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | cpuconsumptiontime: 66692 s
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | nevents: 400
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | neventsw: 0
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | pid: 3698532
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | pgrp: 3698532
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | corecount: 11
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | event service: False
[2025-10-14 10:05:28] 2025-10-14 14:04:38,709 | INFO     | sizes: {0: 2348743, 1: 2348885, 6: 2349147, 12: 2349175, 39585: 2391272, 39592: 2400518, 39618: 2400720}
[2025-10-14 10:05:28] 2025-10-14 14:04:38,710 | INFO     | --------------------------------------------------
[2025-10-14 10:05:28] 2025-10-14 14:04:38,710 | INFO     | 
[2025-10-14 10:05:28] 2025-10-14 14:04:38,710 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-14 10:05:28] 2025-10-14 14:04:38,861 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,864 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,864 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,864 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 10:05:28] 2025-10-14 14:04:38,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,864 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 10:05:28] 2025-10-14 14:04:38,864 | INFO     | job 6840225785 has completed (purged errors)
[2025-10-14 10:05:28] 2025-10-14 14:04:38,910 | INFO     | overall cleanup function is called
[2025-10-14 10:05:28] 2025-10-14 14:04:39,966 | INFO     | --- collectZombieJob: --- 10, [3698532]
[2025-10-14 10:05:28] 2025-10-14 14:04:39,966 | INFO     | zombie collector waiting for pid 3698532
[2025-10-14 10:05:28] 2025-10-14 14:04:39,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 10:05:28] 2025-10-14 14:04:39,966 | INFO     | collected zombie processes
[2025-10-14 10:05:28] 2025-10-14 14:04:39,966 | INFO     | will attempt to kill all subprocesses of pid=3698532
[2025-10-14 10:05:28] 2025-10-14 14:04:41,048 | INFO     | process IDs to be killed: [3698532] (in reverse order)
[2025-10-14 10:05:28] 2025-10-14 14:04:41,163 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 10:05:28] 2025-10-14 14:04:41,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 10:05:28] 2025-10-14 14:04:41,275 | INFO     | did not find any defunct processes belonging to 3698532
[2025-10-14 10:05:28] 2025-10-14 14:04:41,377 | INFO     | did not find any defunct processes belonging to 3698532
[2025-10-14 10:05:28] 2025-10-14 14:04:41,377 | INFO     | ready for new job
[2025-10-14 10:05:28] 2025-10-14 14:04:41,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 10:05:28] 2025-10-14 14:04:41,406 | INFO     | ***************************************
[2025-10-14 10:05:28] 2025-10-14 14:04:41,407 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 10:05:28] 2025-10-14 14:04:41,407 | INFO     | ***************************************
[2025-10-14 10:05:28] 2025-10-14 14:04:41,407 | INFO     | 
[2025-10-14 10:05:28] 2025-10-14 14:04:41,445 | INFO     | architecture information:
[2025-10-14 10:05:28] 2025-10-14 14:04:41,479 | INFO     | executing command: cat /etc/os-release
[2025-10-14 10:05:28] 2025-10-14 14:04:41,638 | INFO     | cat /etc/os-release:
[2025-10-14 10:05:28] NAME="CentOS Linux"
[2025-10-14 10:05:28] VERSION="7 (Core)"
[2025-10-14 10:05:28] ID="centos"
[2025-10-14 10:05:28] ID_LIKE="rhel fedora"
[2025-10-14 10:05:28] VERSION_ID="7"
[2025-10-14 10:05:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 10:05:28] ANSI_COLOR="0;31"
[2025-10-14 10:05:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 10:05:28] HOME_URL="https://www.centos.org/"
[2025-10-14 10:05:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 10:05:28] 
[2025-10-14 10:05:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 10:05:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 10:05:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 10:05:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 10:05:28] 
[2025-10-14 10:05:28] 2025-10-14 14:04:41,638 | INFO     | ***************************************
[2025-10-14 10:05:28] 2025-10-14 14:04:42,142 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-14 10:05:28] 2025-10-14 14:04:42,221 | INFO     | sufficient remaining disk space (63919095808 B)
[2025-10-14 10:05:28] 2025-10-14 14:04:42,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 10:05:28] 2025-10-14 14:04:42,222 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 10:05:28] 2025-10-14 14:04:42,222 | INFO     | update_server=False
[2025-10-14 10:05:28] 2025-10-14 14:04:42,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 10:05:28] 2025-10-14 14:04:42,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 10:05:28] 2025-10-14 14:04:42,223 | INFO     | aborting loop
[2025-10-14 10:05:28] 2025-10-14 14:04:42,223 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 10:05:28] 2025-10-14 14:04:42,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 10:05:28] 2025-10-14 14:04:42,894 | INFO     | all data control threads have been joined
[2025-10-14 10:05:28] 2025-10-14 14:04:43,100 | INFO     | all payload control threads have been joined
[2025-10-14 10:05:28] 2025-10-14 14:04:43,242 | INFO     | [job] retrieve thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:43,242 | INFO     | [job] job monitor thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:43,279 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:43,299 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:43,380 | INFO     | all job control threads have been joined
[2025-10-14 10:05:28] 2025-10-14 14:04:43,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 10:05:28] 2025-10-14 14:04:43,900 | INFO     | [data] control thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:43,983 | INFO     | [payload] validate_post thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,009 | INFO     | [payload] failed_post thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,106 | INFO     | [payload] control thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,325 | INFO     | [job] validate thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,326 | INFO     | [data] copytool_in thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,386 | INFO     | [job] control thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,577 | INFO     | [data] copytool_out thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,714 | INFO     | [job] queue monitor thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:44,719 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:46,249 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:04:52,910 | INFO     | job.realtimelogging is not enabled
[2025-10-14 10:05:28] 2025-10-14 14:04:53,916 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 10:05:28] 2025-10-14 14:05:10,717 | INFO     | PID=3683802 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 10:05:28] 2025-10-14 14:05:10,717 | INFO     | .. there are 8 such processes running
[2025-10-14 10:05:28] 2025-10-14 14:05:10,717 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 10:05:28] 2025-10-14 14:05:10,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 10:05:28] 2025-10-14 14:05:10,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 10:05:28] 2025-10-14 14:05:19,663 | INFO     | [monitor] cgroup control has ended
[2025-10-14 10:05:28] 2025-10-14 14:05:20,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767634970432)>', '<ExcThread(monitor, started 139766985107200)>']
[2025-10-14 10:05:28] 2025-10-14 14:05:20,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 10:05:28] 2025-10-14 14:05:20,778 | INFO     | [monitor] control thread has ended
[2025-10-14 10:05:28] 2025-10-14 14:05:25,143 | INFO     | all workflow threads have been joined
[2025-10-14 10:05:28] 2025-10-14 14:05:25,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 10:05:28] 2025-10-14 14:05:25,151 | INFO     | traces error code: 0
[2025-10-14 10:05:28] 2025-10-14 14:05:25,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 10:05:28] 2025-10-14 14:05:26,908 [wrapper] ==== pilot stdout END ====
[2025-10-14 10:05:28] 2025-10-14 14:05:26,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 10:05:28] 2025-10-14 14:05:27,026 [wrapper] pilotpid: 3683802
[2025-10-14 10:05:28] 2025-10-14 14:05:27,064 [wrapper] Pilot exit status: 0
[2025-10-14 10:05:28] 2025-10-14 14:05:27,256 [wrapper] pandaids: 6840225785 6840225785
[2025-10-14 10:05:28] 2025-10-14 14:05:27,505 [wrapper] cleanup supervisor_pilot  427288 3683803
[2025-10-14 10:05:28] 2025-10-14 14:05:27,526 [wrapper] Test setup, not cleaning
[2025-10-14 10:05:28] 2025-10-14 14:05:27,535 [wrapper] apfmon messages muted
[2025-10-14 10:05:28] 2025-10-14 14:05:27,555 [wrapper] ==== wrapper stdout END ====
[2025-10-14 10:05:28] 2025-10-14 14:05:27,573 [wrapper] ==== wrapper stderr END ====
[2025-10-14 10:05:28]  *** Error codes and diagnostics ***
[2025-10-14 10:05:28]     "exeErrorCode": 0,
[2025-10-14 10:05:28]     "exeErrorDiag": "",
[2025-10-14 10:05:28]     "pilotErrorCode": 0,
[2025-10-14 10:05:28]     "pilotErrorDiag": "",
[2025-10-14 10:05:28]  *** Listing of results directory ***
[2025-10-14 10:05:28] total 648736
[2025-10-14 10:05:28] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-14 10:05:28] -rwx------. 1 boincer umatlas     36292 Oct 12 11:59 runpilot2-wrapper.sh
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:59 queuedata.json
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas       100 Oct 13 22:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 10:05:28] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 22:15 run_atlas
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas       105 Oct 13 22:15 job.xml
[2025-10-14 10:05:28] -rw-r--r--. 3 boincer umatlas 223505513 Oct 13 22:15 EVNT.46676267._004595.pool.root.1
[2025-10-14 10:05:28] -rw-r--r--. 3 boincer umatlas 223505513 Oct 13 22:15 ATLAS.root_0
[2025-10-14 10:05:28] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 22:15 shared
[2025-10-14 10:05:28] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 22:15 input.tar.gz
[2025-10-14 10:05:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 22:15 start_atlas.sh
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas         0 Oct 13 22:15 boinc_lockfile
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 23:03 pandaJob.out
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas    972807 Oct 13 23:04 agis_schedconf.cvmfs.json
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas      6614 Oct 14 10:00 init_data.xml
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas 202295393 Oct 14 10:01 HITS.46676269._082825.pool.root.1
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas       531 Oct 14 10:02 boinc_task_state.xml
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas      1057 Oct 14 10:04 memory_monitor_summary.json
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas   1560740 Oct 14 10:04 agis_ddmendpoints.agis.ALL.json
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas    808992 Oct 14 10:04 log.46676269._082825.job.log.tgz.1
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas        96 Oct 14 10:04 pilot_heartbeat.json
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas      7855 Oct 14 10:04 heartbeat.json
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas      4895 Oct 14 10:05 pilotlog.txt
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas      8192 Oct 14 10:05 boinc_mmap_file
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas   4741202 Oct 14 10:05 log.46676269._082825.job.log.1
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas       357 Oct 14 10:05 output.list
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas        28 Oct 14 10:05 wrapper_checkpoint.txt
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas       620 Oct 14 10:05 runtime_log
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas   5570560 Oct 14 10:05 result.tar.gz
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas      8786 Oct 14 10:05 runtime_log.err
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas       788 Oct 14 10:05 5j8KDmWeDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNXkNDmYyDZCo.diag
[2025-10-14 10:05:28] -rw-r--r--. 1 boincer umatlas     23120 Oct 14 10:05 stderr.txt
[2025-10-14 10:05:28] HITS file was successfully produced:
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas 202295393 Oct 14 10:01 shared/HITS.pool.root.1
[2025-10-14 10:05:28]  *** Contents of shared directory: ***
[2025-10-14 10:05:28] total 421844
[2025-10-14 10:05:28] -rw-r--r--. 3 boincer umatlas 223505513 Oct 13 22:15 ATLAS.root_0
[2025-10-14 10:05:28] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 22:15 input.tar.gz
[2025-10-14 10:05:28] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 22:15 start_atlas.sh
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas 202295393 Oct 14 10:01 HITS.pool.root.1
[2025-10-14 10:05:28] -rw-------. 1 boincer umatlas   5570560 Oct 14 10:05 result.tar.gz
10:05:30 (3676469): run_atlas exited; CPU time 67798.692044
10:05:30 (3676469): called boinc_finish(0)

</stderr_txt>
]]>

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