Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:42:22 (3392746): wrapper (7.7.26015): starting
22:42:22 (3392746): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 22:42:22] Arguments: --nthreads 3
[2025-10-13 22:42:22] Threads: 3
[2025-10-13 22:42:22] Checking for CVMFS
[2025-10-13 22:42:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 22:42:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 22:42:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 22:42:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 22:42:22] 2.9.2.0 1568863 6141 86540 151672 2 57 28693458 36864000 0 130560 0 4794360 99.991 211937 872 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 22:42:22] CVMFS is ok
[2025-10-13 22:42:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 22:42:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 22:42:22] Further information can be found at the LHC@home message board.
[2025-10-13 22:42:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 22:42:22] Checking for apptainer binary...
[2025-10-13 22:42:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 22:42:22] Running /usr/bin/apptainer --version
[2025-10-13 22:42:22] apptainer version 1.4.1-1.1
[2025-10-13 22:42:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 22:42:22] madmaxA273
[2025-10-13 22:42:22] apptainer works
[2025-10-13 22:42:22] Set ATHENA_PROC_NUMBER=3
[2025-10-13 22:42:22] Set ATHENA_CORE_NUMBER=3
[2025-10-13 22:42:22] Starting ATLAS job with PandaID=6843343765
[2025-10-13 22:42:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 00:10:43]  *** The last 200 lines of the pilot log: ***
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 00:10:43] 2025-10-13 22:10:10,805 | INFO     | job 6843343765 has completed (purged errors)
[2025-10-14 00:10:43] 2025-10-13 22:10:10,805 | INFO     | overall cleanup function is called
[2025-10-14 00:10:43] 2025-10-13 22:10:11,811 | INFO     | --- collectZombieJob: --- 10, [3402892]
[2025-10-14 00:10:43] 2025-10-13 22:10:11,811 | INFO     | zombie collector waiting for pid 3402892
[2025-10-14 00:10:43] 2025-10-13 22:10:11,811 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 00:10:43] 2025-10-13 22:10:11,811 | INFO     | collected zombie processes
[2025-10-14 00:10:43] 2025-10-13 22:10:11,811 | INFO     | will attempt to kill all subprocesses of pid=3402892
[2025-10-14 00:10:43] 2025-10-13 22:10:11,853 | INFO     | process IDs to be killed: [3402892] (in reverse order)
[2025-10-14 00:10:43] 2025-10-13 22:10:11,876 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 00:10:43] 2025-10-13 22:10:11,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 00:10:43] 2025-10-13 22:10:11,878 | INFO     | did not find any defunct processes belonging to 3402892
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | did not find any defunct processes belonging to 3402892
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | ready for new job
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | ***************************************
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | ***************************************
[2025-10-14 00:10:43] 2025-10-13 22:10:11,879 | INFO     | 
[2025-10-14 00:10:43] 2025-10-13 22:10:11,880 | INFO     | architecture information:
[2025-10-14 00:10:43] 2025-10-13 22:10:11,880 | INFO     | executing command: cat /etc/os-release
[2025-10-14 00:10:43] 2025-10-13 22:10:11,888 | INFO     | cat /etc/os-release:
[2025-10-14 00:10:43] NAME="CentOS Linux"
[2025-10-14 00:10:43] VERSION="7 (Core)"
[2025-10-14 00:10:43] ID="centos"
[2025-10-14 00:10:43] ID_LIKE="rhel fedora"
[2025-10-14 00:10:43] VERSION_ID="7"
[2025-10-14 00:10:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 00:10:43] ANSI_COLOR="0;31"
[2025-10-14 00:10:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 00:10:43] HOME_URL="https://www.centos.org/"
[2025-10-14 00:10:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 00:10:43] 
[2025-10-14 00:10:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 00:10:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 00:10:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 00:10:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 00:10:43] 
[2025-10-14 00:10:43] 2025-10-13 22:10:11,889 | INFO     | ***************************************
[2025-10-14 00:10:43] 2025-10-13 22:10:12,392 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-14 00:10:43] 2025-10-13 22:10:12,402 | INFO     | sufficient remaining disk space (332916588544 B)
[2025-10-14 00:10:43] 2025-10-13 22:10:12,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 00:10:43] 2025-10-13 22:10:12,403 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 00:10:43] 2025-10-13 22:10:12,403 | INFO     | update_server=False
[2025-10-14 00:10:43] 2025-10-13 22:10:12,403 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 00:10:43] 2025-10-13 22:10:12,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 00:10:43] 2025-10-13 22:10:12,586 | INFO     | all payload control threads have been joined
[2025-10-14 00:10:43] 2025-10-13 22:10:12,718 | INFO     | all job control threads have been joined
[2025-10-14 00:10:43] 2025-10-13 22:10:12,836 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-14 00:10:43] 2025-10-13 22:10:12,836 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-14 00:10:43] 2025-10-13 22:10:12,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 00:10:43] 2025-10-13 22:10:12,836 | INFO     | will abort loop
[2025-10-14 00:10:43] 2025-10-13 22:10:12,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 00:10:43] 2025-10-13 22:10:13,018 | INFO     | all data control threads have been joined
[2025-10-14 00:10:43] 2025-10-13 22:10:13,408 | INFO     | [job] queue monitor thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,409 | INFO     | [job] retrieve thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,590 | INFO     | [payload] validate_post thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,591 | INFO     | [payload] control thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,674 | INFO     | [data] copytool_in thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,723 | INFO     | [job] control thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,842 | INFO     | [job] job monitor thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:13,938 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:14,024 | INFO     | [data] control thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:14,162 | INFO     | [job] validate thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:14,163 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:14,290 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:14,745 | INFO     | [payload] failed_post thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:14,999 | INFO     | [data] copytool_out thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:15,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 00:10:43] 2025-10-13 22:10:19,466 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:22,580 | INFO     | job.realtimelogging is not enabled
[2025-10-14 00:10:43] 2025-10-13 22:10:23,581 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 00:10:43] 2025-10-13 22:10:33,346 | INFO     | [monitor] cgroup control has ended
[2025-10-14 00:10:43] 2025-10-13 22:10:34,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816327567168)>', '<ExcThread(monitor, started 139815974577920)>']
[2025-10-14 00:10:43] 2025-10-13 22:10:39,695 | INFO     | all workflow threads have been joined
[2025-10-14 00:10:43] 2025-10-13 22:10:39,696 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 00:10:43] 2025-10-13 22:10:39,696 | INFO     | traces error code: 0
[2025-10-14 00:10:43] 2025-10-13 22:10:39,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 00:10:43] 2025-10-13 22:10:43,502 | INFO     | PID=3396462 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 00:10:43] 2025-10-13 22:10:43,502 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 00:10:43] 2025-10-13 22:10:43,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 00:10:43] 2025-10-13 22:10:43,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 00:10:43] 2025-10-13 22:10:43,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 00:10:43] 2025-10-13 22:10:43,502 | INFO     | [monitor] control thread has ended
[2025-10-14 00:10:43] 2025-10-13 22:10:43,548 [wrapper] ==== pilot stdout END ====
[2025-10-14 00:10:43] 2025-10-13 22:10:43,551 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 00:10:43] 2025-10-13 22:10:43,553 [wrapper] pilotpid: 3396462
[2025-10-14 00:10:43] 2025-10-13 22:10:43,555 [wrapper] Pilot exit status: 0
[2025-10-14 00:10:43] 2025-10-13 22:10:43,563 [wrapper] pandaids: 6843343765
[2025-10-14 00:10:43] 2025-10-13 22:10:43,578 [wrapper] cleanup supervisor_pilot 3415918 3396463
[2025-10-14 00:10:43] 2025-10-13 22:10:43,580 [wrapper] Test setup, not cleaning
[2025-10-14 00:10:43] 2025-10-13 22:10:43,582 [wrapper] apfmon messages muted
[2025-10-14 00:10:43] 2025-10-13 22:10:43,585 [wrapper] ==== wrapper stdout END ====
[2025-10-14 00:10:43] 2025-10-13 22:10:43,587 [wrapper] ==== wrapper stderr END ====
[2025-10-14 00:10:43]  *** Error codes and diagnostics ***
[2025-10-14 00:10:43]     "exeErrorCode": 0,
[2025-10-14 00:10:43]     "exeErrorDiag": "",
[2025-10-14 00:10:43]     "pilotErrorCode": 0,
[2025-10-14 00:10:43]     "pilotErrorDiag": "",
[2025-10-14 00:10:43]  *** Listing of results directory ***
[2025-10-14 00:10:43] total 414580
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc    557409 Oct 13 21:12 pilot3.tar.gz
[2025-10-14 00:10:43] -rwx------ 1 boinc boinc     36292 Oct 13 21:17 runpilot2-wrapper.sh
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc      5112 Oct 13 21:17 queuedata.json
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc       100 Oct 13 22:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 00:10:43] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 22:42 run_atlas
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc       105 Oct 13 22:42 job.xml
[2025-10-14 00:10:43] -rw-r--r-- 2 boinc boinc 219991849 Oct 13 22:42 EVNT.46676267._004697.pool.root.1
[2025-10-14 00:10:43] -rw-r--r-- 2 boinc boinc    569679 Oct 13 22:42 input.tar.gz
[2025-10-14 00:10:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 22:42 start_atlas.sh
[2025-10-14 00:10:43] drwxrwx--x 2 boinc boinc      4096 Oct 13 22:42 shared
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 22:42 boinc_setup_complete
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc      6443 Oct 13 22:42 init_data.xml
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc         0 Oct 13 22:42 boinc_lockfile
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc      2549 Oct 13 22:42 pandaJob.out
[2025-10-14 00:10:43] -rw------- 1 boinc boinc    972799 Oct 13 22:42 agis_schedconf.cvmfs.json
[2025-10-14 00:10:43] -rw------- 1 boinc boinc   1560580 Oct 13 22:42 agis_ddmendpoints.agis.ALL.json
[2025-10-14 00:10:43] drwx------ 5 boinc boinc      4096 Oct 13 22:42 pilot3
[2025-10-14 00:10:43] -rw------- 1 boinc boinc 198584723 Oct 14 00:09 HITS.46676269._096976.pool.root.1
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc       529 Oct 14 00:09 boinc_task_state.xml
[2025-10-14 00:10:43] -rw------- 1 boinc boinc        95 Oct 14 00:09 pilot_heartbeat.json
[2025-10-14 00:10:43] -rw------- 1 boinc boinc      1021 Oct 14 00:09 memory_monitor_summary.json
[2025-10-14 00:10:43] -rw------- 1 boinc boinc    264374 Oct 14 00:10 log.46676269._096976.job.log.tgz.1
[2025-10-14 00:10:43] -rw------- 1 boinc boinc      7773 Oct 14 00:10 heartbeat.json
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc      8192 Oct 14 00:10 boinc_mmap_file
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc        27 Oct 14 00:10 wrapper_checkpoint.txt
[2025-10-14 00:10:43] -rw------- 1 boinc boinc       747 Oct 14 00:10 pilotlog.txt
[2025-10-14 00:10:43] -rw------- 1 boinc boinc    769118 Oct 14 00:10 log.46676269._096976.job.log.1
[2025-10-14 00:10:43] -rw------- 1 boinc boinc       357 Oct 14 00:10 output.list
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc       620 Oct 14 00:10 runtime_log
[2025-10-14 00:10:43] -rw------- 1 boinc boinc   1054720 Oct 14 00:10 result.tar.gz
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc      8797 Oct 14 00:10 runtime_log.err
[2025-10-14 00:10:43] -rw------- 1 boinc boinc       662 Oct 14 00:10 eyHLDmcEdS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmomNDmepef5n.diag
[2025-10-14 00:10:43] -rw-r--r-- 1 boinc boinc     11947 Oct 14 00:10 stderr.txt
[2025-10-14 00:10:43] HITS file was successfully produced:
[2025-10-14 00:10:43] -rw------- 1 boinc boinc 198584723 Oct 14 00:09 shared/HITS.pool.root.1
[2025-10-14 00:10:43]  *** Contents of shared directory: ***
[2025-10-14 00:10:43] total 410384
[2025-10-14 00:10:43] -rw-r--r-- 2 boinc boinc 219991849 Oct 13 22:42 ATLAS.root_0
[2025-10-14 00:10:43] -rw-r--r-- 2 boinc boinc    569679 Oct 13 22:42 input.tar.gz
[2025-10-14 00:10:43] -rw-r--r-- 2 boinc boinc     15120 Oct 13 22:42 start_atlas.sh
[2025-10-14 00:10:43] -rw------- 1 boinc boinc 198584723 Oct 14 00:09 HITS.pool.root.1
[2025-10-14 00:10:43] -rw------- 1 boinc boinc   1054720 Oct 14 00:10 result.tar.gz
00:10:44 (3392746): run_atlas exited; CPU time 15052.826540
00:10:44 (3392746): called boinc_finish(0)

</stderr_txt>
]]>

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