Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:05:02 (805238): wrapper (7.7.26015): starting
16:05:02 (805238): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 16:05:02] Arguments: --nthreads 9
[2025-10-13 16:05:02] Threads: 9
[2025-10-13 16:05:02] Checking for CVMFS
[2025-10-13 16:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:05:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:05:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:05:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:05:03] 2.13.2.0 5096 7576 81804 151671 1 387 21318871 40960000 20142 16776704 0 19978896 99.874 4824014 33282 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 16:05:03] CVMFS is ok
[2025-10-13 16:05:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:05:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:05:03] Further information can be found at the LHC@home message board.
[2025-10-13 16:05:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:05:03] Checking for apptainer binary...
[2025-10-13 16:05:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:05:03] Running /usr/bin/apptainer --version
[2025-10-13 16:05:03] apptainer version 1.4.3-1.el9
[2025-10-13 16:05:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:05:03] c-212-5.aglt2.org
[2025-10-13 16:05:03] apptainer works
[2025-10-13 16:05:03] Set ATHENA_PROC_NUMBER=9
[2025-10-13 16:05:03] Set ATHENA_CORE_NUMBER=9
[2025-10-13 16:05:03] Starting ATLAS job with PandaID=6831734808
[2025-10-13 16:05:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:24:32]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:24:32]  storage_token=
[2025-10-13 17:24:32]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6831734808/log.46376905._087530.job.log.tgz.1
[2025-10-13 17:24:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/79/log.46376905._087530.job.log.tgz.1
[2025-10-13 17:24:32]  workdir=None
[2025-10-13 17:24:32] ]
[2025-10-13 17:24:32] 2025-10-13 21:23:26,410 | INFO     | transferring file log.46376905._087530.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6831734808/log.46376905._087530.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 17:24:32] 2025-10-13 21:23:26,411 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6831734808/log.46376905._087530.job.log.tgz.1 /tmp/boinchome/slots/3/log.46376905._087530.job
[2025-10-13 17:24:32] 2025-10-13 21:23:26,433 | INFO     | adding to output.list: log.46376905._087530.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/79/log.46376905._087530.job.log.tg
[2025-10-13 17:24:32] 2025-10-13 21:23:26,434 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 17:24:32] 2025-10-13 21:23:26,434 | INFO     | summary of transferred files:
[2025-10-13 17:24:32] 2025-10-13 21:23:26,434 | INFO     |  -- lfn=log.46376905._087530.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 17:24:32] 2025-10-13 21:23:26,435 | INFO     | stage-out finished correctly
[2025-10-13 17:24:32] 2025-10-13 21:23:27,680 | INFO     | time since job start (4690s) is within the limit (172800.0s)
[2025-10-13 17:24:32] 2025-10-13 21:23:27,759 | INFO     | monitor loop #342: job 0:6831734808 is in state 'finished'
[2025-10-13 17:24:32] 2025-10-13 21:23:27,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:24:32] 2025-10-13 21:23:29,182 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 17:24:32] 2025-10-13 21:23:29,269 | INFO     | job 6831734808 has state=finished
[2025-10-13 17:24:32] 2025-10-13 21:23:29,270 | INFO     | preparing for final server update for job 6831734808 in state='finished'
[2025-10-13 17:24:32] 2025-10-13 21:23:29,271 | INFO     | this job has now completed (state=finished)
[2025-10-13 17:24:32] 2025-10-13 21:23:29,271 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 17:24:32] 2025-10-13 21:23:29,271 | INFO     | log transfer has been attempted: DONE
[2025-10-13 17:24:32] 2025-10-13 21:23:29,272 | INFO     | job 6831734808 has finished - writing final server update
[2025-10-13 17:24:32] 2025-10-13 21:23:29,272 | INFO     | total number of processed events: 400 (read)
[2025-10-13 17:24:32] 2025-10-13 21:23:29,273 | INFO     | executing command: lscpu
[2025-10-13 17:24:32] 2025-10-13 21:23:29,363 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 17:24:32] 2025-10-13 21:23:29,687 | INFO     | time since job start (4692s) is within the limit (172800.0s)
[2025-10-13 17:24:32] 2025-10-13 21:23:30,262 | INFO     | monitor loop #343: job 0:6831734808 is in state 'finished'
[2025-10-13 17:24:32] 2025-10-13 21:23:30,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:24:32] 2025-10-13 21:23:31,263 | INFO     | PID=808972 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:24:32] 2025-10-13 21:23:31,263 | INFO     | .. there are 16 such processes running
[2025-10-13 17:24:32] 2025-10-13 21:23:32,264 | INFO     | time since job start (4695s) is within the limit (172800.0s)
[2025-10-13 17:24:32] 2025-10-13 21:23:32,767 | INFO     | monitor loop #344: job 0:6831734808 is in state 'finished'
[2025-10-13 17:24:32] 2025-10-13 21:23:32,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:24:32] 2025-10-13 21:23:34,269 | INFO     | time since job start (4697s) is within the limit (172800.0s)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,063 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 17:24:32] 2025-10-13 21:23:35,070 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2967.460677083334
[2025-10-13 17:24:32] 2025-10-13 21:23:35,087 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6831734808/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,089 | INFO     | extracted standard info from prmon json
[2025-10-13 17:24:32] 2025-10-13 21:23:35,089 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 17:24:32] 2025-10-13 21:23:35,089 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 17:24:32] 2025-10-13 21:23:35,089 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 17:24:32] 2025-10-13 21:23:35,090 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 17:24:32] 2025-10-13 21:23:35,091 | INFO     | fitting pss+swap vs Time
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | sum of square deviations: 106336877.5
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | sum of deviations: 9183028816.000002
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | mean x: 1760388356.5
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | mean y: 2596896.285714286
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | -- intersect: -152020834533.6092
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | intersect: -152020834533.6092
[2025-10-13 17:24:32] 2025-10-13 21:23:35,092 | INFO     | chi2: 0.29742271891281546
[2025-10-13 17:24:32] 2025-10-13 21:23:35,093 | INFO     | -- intersect: -152020834533.6092
[2025-10-13 17:24:32] 2025-10-13 21:23:35,093 | INFO     | current memory leak: 86.36 B/s (using 70 data points, chi2=0.30)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,093 | INFO     | could have reported an average CPU frequency of 2926 MHz (6 samples)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,093 | INFO     | ..............................
[2025-10-13 17:24:32] 2025-10-13 21:23:35,093 | INFO     | . Timing measurements:
[2025-10-13 17:24:32] 2025-10-13 21:23:35,093 | INFO     | . get job = 0 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,100 | INFO     | . initial setup = 2 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,101 | INFO     | . payload setup = 7 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,101 | INFO     | . stage-in = 0 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,101 | INFO     | . payload execution = 4660 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,101 | INFO     | . stage-out = 0 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,101 | INFO     | . log creation = 0 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,101 | INFO     | ..............................
[2025-10-13 17:24:32] 2025-10-13 21:23:35,578 | INFO     | 
[2025-10-13 17:24:32] 2025-10-13 21:23:35,578 | INFO     | job summary report
[2025-10-13 17:24:32] 2025-10-13 21:23:35,578 | INFO     | --------------------------------------------------
[2025-10-13 17:24:32] 2025-10-13 21:23:35,578 | INFO     | PanDA job id: 6831734808
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | task id: 46376905
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | errors: (none)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | pilot state: finished 
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | transexitcode: 0
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | exeerrorcode: 0
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | exeerrordiag: 
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | exitcode: 0
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | exitmsg: OK
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | cpuconsumptiontime: 31963 s
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | nevents: 400
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | neventsw: 0
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | pid: 815475
[2025-10-13 17:24:32] 2025-10-13 21:23:35,579 | INFO     | pgrp: 815475
[2025-10-13 17:24:32] 2025-10-13 21:23:35,580 | INFO     | corecount: 9
[2025-10-13 17:24:32] 2025-10-13 21:23:35,580 | INFO     | event service: False
[2025-10-13 17:24:32] 2025-10-13 21:23:35,580 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 4671: 2375239, 4672: 2384237, 4675: 2384293, 4681: 2384615}
[2025-10-13 17:24:32] 2025-10-13 21:23:35,580 | INFO     | --------------------------------------------------
[2025-10-13 17:24:32] 2025-10-13 21:23:35,580 | INFO     | 
[2025-10-13 17:24:32] 2025-10-13 21:23:35,580 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 17:24:32] 2025-10-13 21:23:35,612 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | job 6831734808 has completed (purged errors)
[2025-10-13 17:24:32] 2025-10-13 21:23:35,614 | INFO     | overall cleanup function is called
[2025-10-13 17:24:32] 2025-10-13 21:23:36,626 | INFO     | --- collectZombieJob: --- 10, [815475]
[2025-10-13 17:24:32] 2025-10-13 21:23:36,627 | INFO     | zombie collector waiting for pid 815475
[2025-10-13 17:24:32] 2025-10-13 21:23:36,627 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:24:32] 2025-10-13 21:23:36,627 | INFO     | collected zombie processes
[2025-10-13 17:24:32] 2025-10-13 21:23:36,627 | INFO     | will attempt to kill all subprocesses of pid=815475
[2025-10-13 17:24:32] 2025-10-13 21:23:37,008 | INFO     | process IDs to be killed: [815475] (in reverse order)
[2025-10-13 17:24:32] 2025-10-13 21:23:37,124 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:24:32] 2025-10-13 21:23:37,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:24:32] 2025-10-13 21:23:37,139 | INFO     | did not find any defunct processes belonging to 815475
[2025-10-13 17:24:32] 2025-10-13 21:23:37,153 | INFO     | did not find any defunct processes belonging to 815475
[2025-10-13 17:24:32] 2025-10-13 21:23:37,153 | INFO     | ready for new job
[2025-10-13 17:24:32] 2025-10-13 21:23:37,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:24:32] 2025-10-13 21:23:37,155 | INFO     | ***************************************
[2025-10-13 17:24:32] 2025-10-13 21:23:37,155 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 17:24:32] 2025-10-13 21:23:37,155 | INFO     | ***************************************
[2025-10-13 17:24:32] 2025-10-13 21:23:37,155 | INFO     | 
[2025-10-13 17:24:32] 2025-10-13 21:23:37,160 | INFO     | architecture information:
[2025-10-13 17:24:32] 2025-10-13 21:23:37,166 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:24:32] 2025-10-13 21:23:37,188 | INFO     | cat /etc/os-release:
[2025-10-13 17:24:32] NAME="CentOS Linux"
[2025-10-13 17:24:32] VERSION="7 (Core)"
[2025-10-13 17:24:32] ID="centos"
[2025-10-13 17:24:32] ID_LIKE="rhel fedora"
[2025-10-13 17:24:32] VERSION_ID="7"
[2025-10-13 17:24:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:24:32] ANSI_COLOR="0;31"
[2025-10-13 17:24:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:24:32] HOME_URL="https://www.centos.org/"
[2025-10-13 17:24:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:24:32] 
[2025-10-13 17:24:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:24:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:24:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:24:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:24:32] 
[2025-10-13 17:24:32] 2025-10-13 21:23:37,189 | INFO     | ***************************************
[2025-10-13 17:24:32] 2025-10-13 21:23:37,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 17:24:32] 2025-10-13 21:23:37,726 | INFO     | sufficient remaining disk space (127657836544 B)
[2025-10-13 17:24:32] 2025-10-13 21:23:37,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:24:32] 2025-10-13 21:23:37,727 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:24:32] 2025-10-13 21:23:37,727 | INFO     | update_server=False
[2025-10-13 17:24:32] 2025-10-13 21:23:37,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:24:32] 2025-10-13 21:23:37,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:24:32] 2025-10-13 21:23:37,774 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 17:24:32] 2025-10-13 21:23:37,774 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 17:24:32] 2025-10-13 21:23:37,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:24:32] 2025-10-13 21:23:37,775 | INFO     | will abort loop
[2025-10-13 17:24:32] 2025-10-13 21:23:37,985 | INFO     | all job control threads have been joined
[2025-10-13 17:24:32] 2025-10-13 21:23:38,187 | INFO     | all data control threads have been joined
[2025-10-13 17:24:32] 2025-10-13 21:23:38,313 | INFO     | all payload control threads have been joined
[2025-10-13 17:24:32] 2025-10-13 21:23:38,732 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:38,780 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:38,991 | INFO     | [job] control thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,193 | INFO     | [data] control thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,255 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,319 | INFO     | [payload] control thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,512 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,734 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:24:32] 2025-10-13 21:23:39,834 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:39,852 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:40,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:40,124 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:40,184 | INFO     | [job] validate thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:40,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:24:32] 2025-10-13 21:23:40,226 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:41,207 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:23:43,786 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:24:32] 2025-10-13 21:24:07,764 | INFO     | PID=808972 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 17:24:32] 2025-10-13 21:24:07,764 | INFO     | .. there are 16 such processes running
[2025-10-13 17:24:32] 2025-10-13 21:24:07,765 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:24:32] 2025-10-13 21:24:07,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:24:32] 2025-10-13 21:24:07,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:24:32] 2025-10-13 21:24:24,817 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:24:32] 2025-10-13 21:24:26,724 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930704250688)>', '<ExcThread(monitor, started 139929690564352)>']
[2025-10-13 17:24:32] 2025-10-13 21:24:26,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:24:32] 2025-10-13 21:24:26,850 | INFO     | [monitor] control thread has ended
[2025-10-13 17:24:32] 2025-10-13 21:24:31,749 | INFO     | all workflow threads have been joined
[2025-10-13 17:24:32] 2025-10-13 21:24:31,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:24:32] 2025-10-13 21:24:31,752 | INFO     | traces error code: 0
[2025-10-13 17:24:32] 2025-10-13 21:24:31,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:24:32] 2025-10-13 21:24:31,906 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:24:32] 2025-10-13 21:24:31,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:24:32] 2025-10-13 21:24:31,911 [wrapper] pilotpid: 808972
[2025-10-13 17:24:32] 2025-10-13 21:24:31,913 [wrapper] Pilot exit status: 0
[2025-10-13 17:24:32] 2025-10-13 21:24:31,922 [wrapper] pandaids: 6831734808
[2025-10-13 17:24:32] 2025-10-13 21:24:31,992 [wrapper] cleanup supervisor_pilot  926655 808973
[2025-10-13 17:24:32] 2025-10-13 21:24:31,996 [wrapper] Test setup, not cleaning
[2025-10-13 17:24:32] 2025-10-13 21:24:31,999 [wrapper] apfmon messages muted
[2025-10-13 17:24:32] 2025-10-13 21:24:32,002 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:24:32] 2025-10-13 21:24:32,004 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:24:32]  *** Error codes and diagnostics ***
[2025-10-13 17:24:32]     "exeErrorCode": 0,
[2025-10-13 17:24:32]     "exeErrorDiag": "",
[2025-10-13 17:24:32]     "pilotErrorCode": 0,
[2025-10-13 17:24:32]     "pilotErrorDiag": "",
[2025-10-13 17:24:32]  *** Listing of results directory ***
[2025-10-13 17:24:32] total 394212
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 10:46 pilot3.tar.gz
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 10:54 queuedata.json
[2025-10-13 17:24:32] -rwx------. 1 boincer umatlas     36292 Oct  5 10:55 runpilot2-wrapper.sh
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas       100 Oct 13 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:24:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 16:05 run_atlas
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas       105 Oct 13 16:05 job.xml
[2025-10-13 17:24:32] -rw-r--r--. 2 boincer umatlas 216407109 Oct 13 16:05 EVNT.46376901._003216.pool.root.1
[2025-10-13 17:24:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 16:05 start_atlas.sh
[2025-10-13 17:24:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 16:05 shared
[2025-10-13 17:24:32] -rw-r--r--. 2 boincer umatlas    565602 Oct 13 16:05 input.tar.gz
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas         0 Oct 13 16:05 boinc_lockfile
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas      2519 Oct 13 16:05 pandaJob.out
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas    972799 Oct 13 16:05 agis_schedconf.cvmfs.json
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas   1560580 Oct 13 16:05 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:24:32] drwx------. 4 boincer umatlas      4096 Oct 13 16:05 pilot3
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas      6945 Oct 13 17:20 init_data.xml
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas 181294219 Oct 13 17:22 HITS.46376905._087530.pool.root.1
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas       530 Oct 13 17:22 boinc_task_state.xml
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas      1038 Oct 13 17:23 memory_monitor_summary.json
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas    358521 Oct 13 17:23 log.46376905._087530.job.log.tgz.1
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas      7790 Oct 13 17:23 heartbeat.json
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas        95 Oct 13 17:24 pilot_heartbeat.json
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas        27 Oct 13 17:24 wrapper_checkpoint.txt
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 17:24 boinc_mmap_file
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas      5010 Oct 13 17:24 pilotlog.txt
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas    681992 Oct 13 17:24 log.46376905._087530.job.log.1
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas       357 Oct 13 17:24 output.list
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas       620 Oct 13 17:24 runtime_log
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas   1064960 Oct 13 17:24 result.tar.gz
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 17:24 runtime_log.err
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas       654 Oct 13 17:24 Ft1NDmjJfP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6lPNDmLyiHom.diag
[2025-10-13 17:24:32] -rw-r--r--. 1 boincer umatlas     22237 Oct 13 17:24 stderr.txt
[2025-10-13 17:24:32] HITS file was successfully produced:
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas 181294219 Oct 13 17:22 shared/HITS.pool.root.1
[2025-10-13 17:24:32]  *** Contents of shared directory: ***
[2025-10-13 17:24:32] total 390000
[2025-10-13 17:24:32] -rw-r--r--. 2 boincer umatlas 216407109 Oct 13 16:05 ATLAS.root_0
[2025-10-13 17:24:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 16:05 start_atlas.sh
[2025-10-13 17:24:32] -rw-r--r--. 2 boincer umatlas    565602 Oct 13 16:05 input.tar.gz
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas 181294219 Oct 13 17:22 HITS.pool.root.1
[2025-10-13 17:24:32] -rw-------. 1 boincer umatlas   1064960 Oct 13 17:24 result.tar.gz
17:24:33 (805238): run_atlas exited; CPU time 32076.610387
17:24:33 (805238): called boinc_finish(0)

</stderr_txt>
]]>

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