Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:40:58 (9624): wrapper (7.7.26015): starting
14:40:58 (9624): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 14:40:58] Arguments: --nthreads 12
[2025-10-13 14:40:58] Threads: 12
[2025-10-13 14:40:58] Checking for CVMFS
[2025-10-13 14:40:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:40:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:40:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:40:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:40:59] 2.11.2.0 2914 224695 98656 151670 2 1 17326145 20275200 1 130560 1 109900176 99.983 13315135 12388 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 14:40:59] CVMFS is ok
[2025-10-13 14:40:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:40:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:40:59] Further information can be found at the LHC@home message board.
[2025-10-13 14:40:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:40:59] Checking for apptainer binary...
[2025-10-13 14:40:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:40:59] Running /usr/bin/apptainer --version
[2025-10-13 14:40:59] apptainer version 1.3.2-1.el7
[2025-10-13 14:40:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:41:00] c-205-5.aglt2.org
[2025-10-13 14:41:00] apptainer works
[2025-10-13 14:41:00] Set ATHENA_PROC_NUMBER=12
[2025-10-13 14:41:00] Set ATHENA_CORE_NUMBER=12
[2025-10-13 14:41:00] Starting ATLAS job with PandaID=6831805529
[2025-10-13 14:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:47:27]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:47:27]  protocol_id=None
[2025-10-13 15:47:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 15:47:27]  replicas=None
[2025-10-13 15:47:27]  scope=mc23_13p6TeV
[2025-10-13 15:47:27]  status=None
[2025-10-13 15:47:27]  status_code=0
[2025-10-13 15:47:27]  storage_token=
[2025-10-13 15:47:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831805529/log.46376905._092022.job.log.tgz.1
[2025-10-13 15:47:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/d4/log.46376905._092022.job.log.tgz.1
[2025-10-13 15:47:27]  workdir=None
[2025-10-13 15:47:27] ]
[2025-10-13 15:47:27] 2025-10-13 19:46:41,562 | INFO     | transferring file log.46376905._092022.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831805529/log.46376905._092022.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 15:47:27] 2025-10-13 19:46:41,562 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831805529/log.46376905._092022.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._092022.job
[2025-10-13 15:47:27] 2025-10-13 19:46:41,583 | INFO     | adding to output.list: log.46376905._092022.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/d4/log.46376905._092022.job.log.tg
[2025-10-13 15:47:27] 2025-10-13 19:46:41,584 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 15:47:27] 2025-10-13 19:46:41,584 | INFO     | summary of transferred files:
[2025-10-13 15:47:27] 2025-10-13 19:46:41,584 | INFO     |  -- lfn=log.46376905._092022.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 15:47:27] 2025-10-13 19:46:41,584 | INFO     | stage-out finished correctly
[2025-10-13 15:47:27] 2025-10-13 19:46:41,631 | INFO     | time since job start (3925s) is within the limit (172800.0s)
[2025-10-13 15:47:27] 2025-10-13 19:46:42,309 | INFO     | monitor loop #293: job 0:6831805529 is in state 'finished'
[2025-10-13 15:47:27] 2025-10-13 19:46:42,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:47:27] 2025-10-13 19:46:42,405 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 15:47:27] 2025-10-13 19:46:42,483 | INFO     | job 6831805529 has state=finished
[2025-10-13 15:47:27] 2025-10-13 19:46:42,483 | INFO     | preparing for final server update for job 6831805529 in state='finished'
[2025-10-13 15:47:27] 2025-10-13 19:46:42,484 | INFO     | this job has now completed (state=finished)
[2025-10-13 15:47:27] 2025-10-13 19:46:42,484 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 15:47:27] 2025-10-13 19:46:42,484 | INFO     | log transfer has been attempted: DONE
[2025-10-13 15:47:27] 2025-10-13 19:46:42,484 | INFO     | job 6831805529 has finished - writing final server update
[2025-10-13 15:47:27] 2025-10-13 19:46:42,485 | INFO     | total number of processed events: 400 (read)
[2025-10-13 15:47:27] 2025-10-13 19:46:42,486 | INFO     | executing command: lscpu
[2025-10-13 15:47:27] 2025-10-13 19:46:42,511 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 15:47:27] 2025-10-13 19:46:42,748 | INFO     | PID=13366 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 15:47:27] 2025-10-13 19:46:43,749 | INFO     | time since job start (3927s) is within the limit (172800.0s)
[2025-10-13 15:47:27] 2025-10-13 19:46:44,812 | INFO     | monitor loop #294: job 0:6831805529 is in state 'finished'
[2025-10-13 15:47:27] 2025-10-13 19:46:44,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:47:27] 2025-10-13 19:46:45,754 | INFO     | time since job start (3929s) is within the limit (172800.0s)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,285 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 15:47:27] 2025-10-13 19:46:47,289 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5
[2025-10-13 15:47:27] 2025-10-13 19:46:47,291 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831805529/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,292 | INFO     | extracted standard info from prmon json
[2025-10-13 15:47:27] 2025-10-13 19:46:47,292 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 15:47:27] 2025-10-13 19:46:47,292 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 15:47:27] 2025-10-13 19:46:47,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 15:47:27] 2025-10-13 19:46:47,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 15:47:27] 2025-10-13 19:46:47,295 | INFO     | fitting pss+swap vs Time
[2025-10-13 15:47:27] 2025-10-13 19:46:47,295 | INFO     | sum of square deviations: 57407588.0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,295 | INFO     | sum of deviations: -5784668064.0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,296 | INFO     | mean x: 1760382918.0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,296 | INFO     | mean y: 2790573.49122807
[2025-10-13 15:47:27] 2025-10-13 19:46:47,296 | INFO     | -- intersect: 177387544069.24396
[2025-10-13 15:47:27] 2025-10-13 19:46:47,296 | INFO     | intersect: 177387544069.24396
[2025-10-13 15:47:27] 2025-10-13 19:46:47,296 | INFO     | chi2: 0.08065122900142323
[2025-10-13 15:47:27] 2025-10-13 19:46:47,296 | INFO     | -- intersect: 177387544069.24396
[2025-10-13 15:47:27] 2025-10-13 19:46:47,297 | INFO     | current memory leak: -100.76 B/s (using 57 data points, chi2=0.08)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,297 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,297 | INFO     | ..............................
[2025-10-13 15:47:27] 2025-10-13 19:46:47,297 | INFO     | . Timing measurements:
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . get job = 0 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . initial setup = 2 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . payload setup = 7 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . stage-in = 0 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . payload execution = 3897 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . stage-out = 0 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | . log creation = 0 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,298 | INFO     | ..............................
[2025-10-13 15:47:27] 2025-10-13 19:46:47,383 | INFO     | 
[2025-10-13 15:47:27] 2025-10-13 19:46:47,383 | INFO     | job summary report
[2025-10-13 15:47:27] 2025-10-13 19:46:47,383 | INFO     | --------------------------------------------------
[2025-10-13 15:47:27] 2025-10-13 19:46:47,383 | INFO     | PanDA job id: 6831805529
[2025-10-13 15:47:27] 2025-10-13 19:46:47,383 | INFO     | task id: 46376905
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | errors: (none)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | pilot state: finished 
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | transexitcode: 0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | exeerrorcode: 0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | exeerrordiag: 
[2025-10-13 15:47:27] 2025-10-13 19:46:47,384 | INFO     | exitcode: 0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | exitmsg: OK
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | cpuconsumptiontime: 42131 s
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | nevents: 400
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | neventsw: 0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | pid: 19721
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | pgrp: 19721
[2025-10-13 15:47:27] 2025-10-13 19:46:47,385 | INFO     | corecount: 12
[2025-10-13 15:47:27] 2025-10-13 19:46:47,386 | INFO     | event service: False
[2025-10-13 15:47:27] 2025-10-13 19:46:47,386 | INFO     | sizes: {0: 2348765, 5: 2349027, 11: 2349083, 3908: 2374862, 3909: 2383860, 3910: 2383916, 3914: 2384238}
[2025-10-13 15:47:27] 2025-10-13 19:46:47,386 | INFO     | --------------------------------------------------
[2025-10-13 15:47:27] 2025-10-13 19:46:47,386 | INFO     | 
[2025-10-13 15:47:27] 2025-10-13 19:46:47,386 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 15:47:27] 2025-10-13 19:46:47,415 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,415 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,415 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,415 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,416 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,416 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,416 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,416 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,416 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,417 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,417 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,417 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,417 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,418 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:47:27] 2025-10-13 19:46:47,418 | INFO     | job 6831805529 has completed (purged errors)
[2025-10-13 15:47:27] 2025-10-13 19:46:47,418 | INFO     | overall cleanup function is called
[2025-10-13 15:47:27] 2025-10-13 19:46:48,422 | INFO     | --- collectZombieJob: --- 10, [19721]
[2025-10-13 15:47:27] 2025-10-13 19:46:48,423 | INFO     | zombie collector waiting for pid 19721
[2025-10-13 15:47:27] 2025-10-13 19:46:48,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:47:27] 2025-10-13 19:46:48,423 | INFO     | collected zombie processes
[2025-10-13 15:47:27] 2025-10-13 19:46:48,423 | INFO     | will attempt to kill all subprocesses of pid=19721
[2025-10-13 15:47:27] 2025-10-13 19:46:48,514 | INFO     | process IDs to be killed: [19721] (in reverse order)
[2025-10-13 15:47:27] 2025-10-13 19:46:48,564 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:47:27] 2025-10-13 19:46:48,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:47:27] 2025-10-13 19:46:48,568 | INFO     | did not find any defunct processes belonging to 19721
[2025-10-13 15:47:27] 2025-10-13 19:46:48,570 | INFO     | did not find any defunct processes belonging to 19721
[2025-10-13 15:47:27] 2025-10-13 19:46:48,571 | INFO     | ready for new job
[2025-10-13 15:47:27] 2025-10-13 19:46:48,571 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:47:27] 2025-10-13 19:46:48,572 | INFO     | ***************************************
[2025-10-13 15:47:27] 2025-10-13 19:46:48,572 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 15:47:27] 2025-10-13 19:46:48,572 | INFO     | ***************************************
[2025-10-13 15:47:27] 2025-10-13 19:46:48,572 | INFO     | 
[2025-10-13 15:47:27] 2025-10-13 19:46:48,573 | INFO     | architecture information:
[2025-10-13 15:47:27] 2025-10-13 19:46:48,573 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:47:27] 2025-10-13 19:46:48,588 | INFO     | cat /etc/os-release:
[2025-10-13 15:47:27] NAME="CentOS Linux"
[2025-10-13 15:47:27] VERSION="7 (Core)"
[2025-10-13 15:47:27] ID="centos"
[2025-10-13 15:47:27] ID_LIKE="rhel fedora"
[2025-10-13 15:47:27] VERSION_ID="7"
[2025-10-13 15:47:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:47:27] ANSI_COLOR="0;31"
[2025-10-13 15:47:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:47:27] HOME_URL="https://www.centos.org/"
[2025-10-13 15:47:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:47:27] 
[2025-10-13 15:47:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:47:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:47:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:47:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:47:27] 
[2025-10-13 15:47:27] 2025-10-13 19:46:48,588 | INFO     | ***************************************
[2025-10-13 15:47:27] 2025-10-13 19:46:49,091 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 15:47:27] 2025-10-13 19:46:49,110 | INFO     | sufficient remaining disk space (29391585280 B)
[2025-10-13 15:47:27] 2025-10-13 19:46:49,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:47:27] 2025-10-13 19:46:49,111 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:47:27] 2025-10-13 19:46:49,111 | INFO     | update_server=False
[2025-10-13 15:47:27] 2025-10-13 19:46:49,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:47:27] 2025-10-13 19:46:49,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:47:27] 2025-10-13 19:46:49,111 | INFO     | aborting loop
[2025-10-13 15:47:27] 2025-10-13 19:46:49,112 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:47:27] 2025-10-13 19:46:49,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:47:27] 2025-10-13 19:46:49,173 | INFO     | all payload control threads have been joined
[2025-10-13 15:47:27] 2025-10-13 19:46:49,651 | INFO     | all job control threads have been joined
[2025-10-13 15:47:27] 2025-10-13 19:46:49,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:47:27] 2025-10-13 19:46:49,690 | INFO     | all data control threads have been joined
[2025-10-13 15:47:27] 2025-10-13 19:46:50,116 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,117 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,118 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,118 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,179 | INFO     | [payload] control thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,653 | INFO     | [job] control thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,695 | INFO     | [data] control thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,716 | INFO     | [job] validate thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,774 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,781 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:50,985 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:51,095 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:51,462 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:51,684 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:53,118 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:46:59,824 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:47:27] 2025-10-13 19:47:00,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:47:27] 2025-10-13 19:47:18,956 | INFO     | PID=13366 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 15:47:27] 2025-10-13 19:47:18,956 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:47:27] 2025-10-13 19:47:18,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:47:27] 2025-10-13 19:47:18,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:47:27] 2025-10-13 19:47:22,297 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:47:27] 2025-10-13 19:47:22,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310455560000)>', '<ExcThread(monitor, started 140309660952320)>']
[2025-10-13 15:47:27] 2025-10-13 19:47:22,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:47:27] 2025-10-13 19:47:22,977 | INFO     | [monitor] control thread has ended
[2025-10-13 15:47:27] 2025-10-13 19:47:27,611 | INFO     | all workflow threads have been joined
[2025-10-13 15:47:27] 2025-10-13 19:47:27,611 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:47:27] 2025-10-13 19:47:27,612 | INFO     | traces error code: 0
[2025-10-13 15:47:27] 2025-10-13 19:47:27,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:47:27] 2025-10-13 19:47:27,704 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:47:27] 2025-10-13 19:47:27,707 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:47:27] 2025-10-13 19:47:27,711 [wrapper] pilotpid: 13366
[2025-10-13 15:47:27] 2025-10-13 19:47:27,715 [wrapper] Pilot exit status: 0
[2025-10-13 15:47:27] 2025-10-13 19:47:27,730 [wrapper] pandaids: 6831805529
[2025-10-13 15:47:27] 2025-10-13 19:47:27,774 [wrapper] cleanup supervisor_pilot 27948 13367
[2025-10-13 15:47:27] 2025-10-13 19:47:27,778 [wrapper] Test setup, not cleaning
[2025-10-13 15:47:27] 2025-10-13 19:47:27,782 [wrapper] apfmon messages muted
[2025-10-13 15:47:27] 2025-10-13 19:47:27,786 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:47:27] 2025-10-13 19:47:27,789 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:47:27]  *** Error codes and diagnostics ***
[2025-10-13 15:47:27]     "exeErrorCode": 0,
[2025-10-13 15:47:27]     "exeErrorDiag": "",
[2025-10-13 15:47:27]     "pilotErrorCode": 0,
[2025-10-13 15:47:27]     "pilotErrorDiag": "",
[2025-10-13 15:47:27]  *** Listing of results directory ***
[2025-10-13 15:47:27] total 391576
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 13:46 pilot3.tar.gz
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 13:55 queuedata.json
[2025-10-13 15:47:27] -rwx------ 1 boincer umatlas     36292 Oct  5 13:55 runpilot2-wrapper.sh
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas       100 Oct 13 14:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:47:27] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 14:40 run_atlas
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas       105 Oct 13 14:40 job.xml
[2025-10-13 15:47:27] -rw-r--r-- 2 boincer umatlas 214618983 Oct 13 14:40 EVNT.46376901._003391.pool.root.1
[2025-10-13 15:47:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 14:40 start_atlas.sh
[2025-10-13 15:47:27] drwxrwx--x 2 boincer umatlas      4096 Oct 13 14:40 shared
[2025-10-13 15:47:27] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 14:40 input.tar.gz
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas         0 Oct 13 14:40 boinc_lockfile
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas      2518 Oct 13 14:41 pandaJob.out
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas    972799 Oct 13 14:41 agis_schedconf.cvmfs.json
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas   1560580 Oct 13 14:41 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:47:27] drwx------ 4 boincer umatlas      4096 Oct 13 14:41 pilot3
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 15:45 init_data.xml
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas 180539920 Oct 13 15:46 HITS.46376905._092022.pool.root.1
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas      1046 Oct 13 15:46 memory_monitor_summary.json
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas    385810 Oct 13 15:46 log.46376905._092022.job.log.tgz.1
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas       529 Oct 13 15:46 boinc_task_state.xml
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas      7853 Oct 13 15:46 heartbeat.json
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas        95 Oct 13 15:47 pilot_heartbeat.json
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas        27 Oct 13 15:47 wrapper_checkpoint.txt
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 15:47 boinc_mmap_file
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas      4818 Oct 13 15:47 pilotlog.txt
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas    574752 Oct 13 15:47 log.46376905._092022.job.log.1
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas       357 Oct 13 15:47 output.list
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas       620 Oct 13 15:47 runtime_log
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas    983040 Oct 13 15:47 result.tar.gz
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 15:47 runtime_log.err
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas       658 Oct 13 15:47 JekKDmH8hP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKWQNDmSmPAVn.diag
[2025-10-13 15:47:27] -rw-r--r-- 1 boincer umatlas     21837 Oct 13 15:47 stderr.txt
[2025-10-13 15:47:27] HITS file was successfully produced:
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas 180539920 Oct 13 15:46 shared/HITS.pool.root.1
[2025-10-13 15:47:27]  *** Contents of shared directory: ***
[2025-10-13 15:47:27] total 387440
[2025-10-13 15:47:27] -rw-r--r-- 2 boincer umatlas 214618983 Oct 13 14:40 ATLAS.root_0
[2025-10-13 15:47:27] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 14:40 start_atlas.sh
[2025-10-13 15:47:27] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 14:40 input.tar.gz
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas 180539920 Oct 13 15:46 HITS.pool.root.1
[2025-10-13 15:47:27] -rw------- 1 boincer umatlas    983040 Oct 13 15:47 result.tar.gz
15:47:29 (9624): run_atlas exited; CPU time 42107.472142
15:47:29 (9624): called boinc_finish(0)

</stderr_txt>
]]>

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