Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:25:13 (893394): wrapper (7.7.26015): starting
14:25:13 (893394): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 14:25:13] Arguments: --nthreads 9
[2025-10-13 14:25:13] Threads: 9
[2025-10-13 14:25:13] Checking for CVMFS
[2025-10-13 14:25:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:25:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:25:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:25:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:25:15] 2.13.2.0 3029961 131037 505132 151670 0 14 37564006 40960001 18112 16776704 20 271715354 99.692 222619965 21357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 14:25:15] CVMFS is ok
[2025-10-13 14:25:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:25:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:25:15] Further information can be found at the LHC@home message board.
[2025-10-13 14:25:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:25:15] Checking for apptainer binary...
[2025-10-13 14:25:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:25:15] Running /usr/bin/apptainer --version
[2025-10-13 14:25:15] apptainer version 1.4.3-1.el9
[2025-10-13 14:25:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:25:15] c7-11-14.aglt2.org
[2025-10-13 14:25:15] apptainer works
[2025-10-13 14:25:15] Set ATHENA_PROC_NUMBER=9
[2025-10-13 14:25:15] Set ATHENA_CORE_NUMBER=9
[2025-10-13 14:25:15] Starting ATLAS job with PandaID=6839387545
[2025-10-13 14:25:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:28:52 (1149084): wrapper (7.7.26015): starting
15:28:52 (1149084): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 15:28:52] Arguments: --nthreads 8
[2025-10-13 15:28:52] Threads: 8
[2025-10-13 15:28:52] This job has been restarted, cleaning up previous attempt
[2025-10-13 15:28:52] Checking for CVMFS
[2025-10-13 15:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 15:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 15:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 15:28:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 15:28:52] 2.13.2.0 3029961 131101 506536 151671 1 105 38549598 40960001 15276 16776704 20 271970923 99.692 222621334 21357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 15:28:52] CVMFS is ok
[2025-10-13 15:28:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 15:28:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 15:28:52] Further information can be found at the LHC@home message board.
[2025-10-13 15:28:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 15:28:52] Checking for apptainer binary...
[2025-10-13 15:28:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 15:28:52] Running /usr/bin/apptainer --version
[2025-10-13 15:28:52] apptainer version 1.4.3-1.el9
[2025-10-13 15:28:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 15:28:52] c7-11-14.aglt2.org
[2025-10-13 15:28:52] apptainer works
[2025-10-13 15:28:52] Set ATHENA_PROC_NUMBER=8
[2025-10-13 15:28:52] Set ATHENA_CORE_NUMBER=8
[2025-10-13 15:28:52] Starting ATLAS job with PandaID=6839387545
[2025-10-13 15:28:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:23:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:23:35] 2025-10-13 21:23:02,749 | INFO     | monitor loop #483: job 0:6839387545 is in state 'finished'
[2025-10-13 17:23:35] 2025-10-13 21:23:02,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,494 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 17:23:35] 2025-10-13 21:23:03,497 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3240.3055000000004
[2025-10-13 17:23:35] 2025-10-13 21:23:03,504 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839387545/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,504 | INFO     | extracted standard info from prmon json
[2025-10-13 17:23:35] 2025-10-13 21:23:03,504 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 17:23:35] 2025-10-13 21:23:03,504 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 17:23:35] 2025-10-13 21:23:03,505 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 17:23:35] 2025-10-13 21:23:03,505 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 17:23:35] 2025-10-13 21:23:03,506 | INFO     | fitting pss+swap vs Time
[2025-10-13 17:23:35] 2025-10-13 21:23:03,506 | INFO     | sum of square deviations: 435622482.7142866
[2025-10-13 17:23:35] 2025-10-13 21:23:03,506 | INFO     | sum of deviations: 6137658176.000007
[2025-10-13 17:23:35] 2025-10-13 21:23:03,506 | INFO     | mean x: 1760387154.607143
[2025-10-13 17:23:35] 2025-10-13 21:23:03,506 | INFO     | mean y: 2156959.25
[2025-10-13 17:23:35] 2025-10-13 21:23:03,506 | INFO     | -- intersect: -24800636838.43929
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | intersect: -24800636838.43929
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | chi2: 1.3966721902484793
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | sum of square deviations: 379848352.6542059
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | sum of deviations: 5223530684.01869
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | mean x: 1760387002.1121495
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | mean y: 2154435.831775701
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | -- intersect: -24206020897.8955
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | intersect: -24206020897.8955
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | chi2: 1.395310212000477
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | current chi2=1.395310212000477 (change=0.0975159566798577 %)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,507 | INFO     | right removable region: 106
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | sum of square deviations: 379841032.6542059
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | sum of deviations: -7012547807.504672
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | mean x: 1760387307.1121495
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | mean y: 2192091.542056075
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | -- intersect: 32502104132.60539
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | intersect: 32502104132.60539
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | chi2: 0.05629651194853961
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | current chi2=0.05629651194853961 (change=95.96923942915166 %)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,508 | INFO     | sum of square deviations: 329036420.0882351
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | sum of deviations: -6951588346.411763
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | mean x: 1760387459.6176472
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | mean y: 2191891.117647059
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | -- intersect: 37194089815.869606
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | intersect: 37194089815.869606
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | chi2: 0.052343144624243165
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | current chi2=0.052343144624243165 (change=7.022401899268997 %)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | left removable region: 20
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | sum of square deviations: 197205903.8255817
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | sum of deviations: -5653752872.232557
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | mean x: 1760387581.639535
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | mean y: 2184569.1860465114
[2025-10-13 17:23:35] 2025-10-13 21:23:03,509 | INFO     | -- intersect: 50471243318.764725
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | intersect: 50471243318.764725
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | chi2: 0.03813932863715332
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | -- intersect: 50471243318.764725
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | current memory leak: -28.67 B/s (using 86 data points, chi2=0.04)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | could have reported an average CPU frequency of 3249 MHz (7 samples)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | ..............................
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . Timing measurements:
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . get job = 0 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . initial setup = 0 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . payload setup = 5 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . stage-in = 0 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . payload execution = 6808 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . stage-out = 0 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | . log creation = 0 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,510 | INFO     | ..............................
[2025-10-13 17:23:35] 2025-10-13 21:23:03,565 | INFO     | 
[2025-10-13 17:23:35] 2025-10-13 21:23:03,565 | INFO     | job summary report
[2025-10-13 17:23:35] 2025-10-13 21:23:03,565 | INFO     | --------------------------------------------------
[2025-10-13 17:23:35] 2025-10-13 21:23:03,565 | INFO     | PanDA job id: 6839387545
[2025-10-13 17:23:35] 2025-10-13 21:23:03,565 | INFO     | task id: 46676269
[2025-10-13 17:23:35] 2025-10-13 21:23:03,565 | INFO     | errors: (none)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | pilot state: finished 
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | transexitcode: 0
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | exeerrorcode: 0
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | exeerrordiag: 
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | exitcode: 0
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | exitmsg: OK
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | cpuconsumptiontime: 32701 s
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | nevents: 400
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | neventsw: 0
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | pid: 1181118
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | pgrp: 1181118
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | corecount: 8
[2025-10-13 17:23:35] 2025-10-13 21:23:03,566 | INFO     | event service: False
[2025-10-13 17:23:35] 2025-10-13 21:23:03,567 | INFO     | sizes: {0: 2348630, 1: 2348885, 5: 2349147, 12: 2349203, 6818: 2376570, 6820: 2385568, 6821: 2385752, 6826: 2385946}
[2025-10-13 17:23:35] 2025-10-13 21:23:03,567 | INFO     | --------------------------------------------------
[2025-10-13 17:23:35] 2025-10-13 21:23:03,567 | INFO     | 
[2025-10-13 17:23:35] 2025-10-13 21:23:03,567 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,587 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | job 6839387545 has completed (purged errors)
[2025-10-13 17:23:35] 2025-10-13 21:23:03,588 | INFO     | overall cleanup function is called
[2025-10-13 17:23:35] 2025-10-13 21:23:04,597 | INFO     | --- collectZombieJob: --- 10, [1181118]
[2025-10-13 17:23:35] 2025-10-13 21:23:04,597 | INFO     | zombie collector waiting for pid 1181118
[2025-10-13 17:23:35] 2025-10-13 21:23:04,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:23:35] 2025-10-13 21:23:04,597 | INFO     | collected zombie processes
[2025-10-13 17:23:35] 2025-10-13 21:23:04,597 | INFO     | will attempt to kill all subprocesses of pid=1181118
[2025-10-13 17:23:35] 2025-10-13 21:23:04,861 | INFO     | process IDs to be killed: [1181118] (in reverse order)
[2025-10-13 17:23:35] 2025-10-13 21:23:04,948 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:23:35] 2025-10-13 21:23:04,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:23:35] 2025-10-13 21:23:04,962 | INFO     | did not find any defunct processes belonging to 1181118
[2025-10-13 17:23:35] 2025-10-13 21:23:04,977 | INFO     | did not find any defunct processes belonging to 1181118
[2025-10-13 17:23:35] 2025-10-13 21:23:04,978 | INFO     | ready for new job
[2025-10-13 17:23:35] 2025-10-13 21:23:04,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:23:35] 2025-10-13 21:23:04,980 | INFO     | ***************************************
[2025-10-13 17:23:35] 2025-10-13 21:23:04,980 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:23:35] 2025-10-13 21:23:04,981 | INFO     | ***************************************
[2025-10-13 17:23:35] 2025-10-13 21:23:04,981 | INFO     | 
[2025-10-13 17:23:35] 2025-10-13 21:23:04,997 | INFO     | architecture information:
[2025-10-13 17:23:35] 2025-10-13 21:23:04,998 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:23:35] 2025-10-13 21:23:05,016 | INFO     | cat /etc/os-release:
[2025-10-13 17:23:35] NAME="CentOS Linux"
[2025-10-13 17:23:35] VERSION="7 (Core)"
[2025-10-13 17:23:35] ID="centos"
[2025-10-13 17:23:35] ID_LIKE="rhel fedora"
[2025-10-13 17:23:35] VERSION_ID="7"
[2025-10-13 17:23:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:23:35] ANSI_COLOR="0;31"
[2025-10-13 17:23:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:23:35] HOME_URL="https://www.centos.org/"
[2025-10-13 17:23:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:23:35] 
[2025-10-13 17:23:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:23:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:23:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:23:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:23:35] 
[2025-10-13 17:23:35] 2025-10-13 21:23:05,016 | INFO     | ***************************************
[2025-10-13 17:23:35] 2025-10-13 21:23:05,519 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 17:23:35] 2025-10-13 21:23:05,537 | INFO     | sufficient remaining disk space (86055583744 B)
[2025-10-13 17:23:35] 2025-10-13 21:23:05,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:23:35] 2025-10-13 21:23:05,538 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:23:35] 2025-10-13 21:23:05,538 | INFO     | update_server=False
[2025-10-13 17:23:35] 2025-10-13 21:23:05,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:23:35] 2025-10-13 21:23:05,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:23:35] 2025-10-13 21:23:05,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:23:35] 2025-10-13 21:23:05,871 | INFO     | all job control threads have been joined
[2025-10-13 17:23:35] 2025-10-13 21:23:05,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:23:35] 2025-10-13 21:23:06,108 | INFO     | all payload control threads have been joined
[2025-10-13 17:23:35] 2025-10-13 21:23:06,132 | INFO     | all data control threads have been joined
[2025-10-13 17:23:35] 2025-10-13 21:23:06,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:23:35] 2025-10-13 21:23:06,261 | INFO     | aborting loop
[2025-10-13 17:23:35] 2025-10-13 21:23:06,543 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:06,544 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:06,876 | INFO     | [job] control thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:06,877 | INFO     | [job] validate thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:06,919 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:06,999 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,113 | INFO     | [payload] control thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,137 | INFO     | [data] control thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,266 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,274 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,403 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,415 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,423 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:07,899 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:09,541 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:13,388 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:23:35] 2025-10-13 21:23:16,144 | INFO     | job.realtimelogging is not enabled
[2025-10-13 17:23:35] 2025-10-13 21:23:17,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:23:35] 2025-10-13 21:23:18,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140354018248512)>', '<ExcThread(monitor, started 140353533363968)>']
[2025-10-13 17:23:35] 2025-10-13 21:23:23,785 | INFO     | all workflow threads have been joined
[2025-10-13 17:23:35] 2025-10-13 21:23:23,786 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:23:35] 2025-10-13 21:23:23,786 | INFO     | traces error code: 0
[2025-10-13 17:23:35] 2025-10-13 21:23:23,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:23:35] 2025-10-13 21:23:35,078 | INFO     | PID=1160318 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:23:35] 2025-10-13 21:23:35,078 | INFO     | .. there are 19 such processes running
[2025-10-13 17:23:35] 2025-10-13 21:23:35,079 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:23:35] 2025-10-13 21:23:35,079 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:23:35] 2025-10-13 21:23:35,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:23:35] 2025-10-13 21:23:35,079 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:23:35] 2025-10-13 21:23:35,079 | INFO     | [monitor] control thread has ended
[2025-10-13 17:23:35] 2025-10-13 21:23:35,208 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:23:35] 2025-10-13 21:23:35,212 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:23:35] 2025-10-13 21:23:35,217 [wrapper] pilotpid: 1160318
[2025-10-13 17:23:35] 2025-10-13 21:23:35,219 [wrapper] Pilot exit status: 0
[2025-10-13 17:23:35] 2025-10-13 21:23:35,230 [wrapper] pandaids: 6839387545 6839387545
[2025-10-13 17:23:35] 2025-10-13 21:23:35,307 [wrapper] cleanup supervisor_pilot 1440355 1160320
[2025-10-13 17:23:35] 2025-10-13 21:23:35,311 [wrapper] Test setup, not cleaning
[2025-10-13 17:23:35] 2025-10-13 21:23:35,314 [wrapper] apfmon messages muted
[2025-10-13 17:23:35] 2025-10-13 21:23:35,318 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:23:35] 2025-10-13 21:23:35,321 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:23:35]  *** Error codes and diagnostics ***
[2025-10-13 17:23:35]     "exeErrorCode": 0,
[2025-10-13 17:23:35]     "exeErrorDiag": "",
[2025-10-13 17:23:35]     "pilotErrorCode": 0,
[2025-10-13 17:23:35]     "pilotErrorDiag": "",
[2025-10-13 17:23:35]  *** Listing of results directory ***
[2025-10-13 17:23:35] total 628328
[2025-10-13 17:23:35] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 00:38 pilot3.tar.gz
[2025-10-13 17:23:35] -rwx------. 1 boincer umatlas     36292 Oct 12 00:52 runpilot2-wrapper.sh
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 00:52 queuedata.json
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas       100 Oct 13 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:23:35] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 14:25 run_atlas
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas       105 Oct 13 14:25 job.xml
[2025-10-13 17:23:35] -rw-r--r--. 3 boincer umatlas 220367285 Oct 13 14:25 EVNT.46676267._004305.pool.root.1
[2025-10-13 17:23:35] -rw-r--r--. 3 boincer umatlas 220367285 Oct 13 14:25 ATLAS.root_0
[2025-10-13 17:23:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 14:25 start_atlas.sh
[2025-10-13 17:23:35] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 14:25 shared
[2025-10-13 17:23:35] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 14:25 input.tar.gz
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas         0 Oct 13 14:25 boinc_lockfile
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas   1560580 Oct 13 14:25 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 15:28 pandaJob.out
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas    972799 Oct 13 15:29 agis_schedconf.cvmfs.json
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas 196125968 Oct 13 17:22 HITS.46676269._071436.pool.root.1
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas       530 Oct 13 17:22 boinc_task_state.xml
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas      6899 Oct 13 17:22 init_data.xml
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas      1033 Oct 13 17:22 memory_monitor_summary.json
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas    358026 Oct 13 17:22 log.46676269._071436.job.log.tgz.1
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas      7780 Oct 13 17:23 heartbeat.json
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 17:23 boinc_mmap_file
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas        27 Oct 13 17:23 wrapper_checkpoint.txt
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas       823 Oct 13 17:23 pilotlog.txt
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas        96 Oct 13 17:23 pilot_heartbeat.json
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas    967604 Oct 13 17:23 log.46676269._071436.job.log.1
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas       357 Oct 13 17:23 output.list
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas       620 Oct 13 17:23 runtime_log
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas   1341440 Oct 13 17:23 result.tar.gz
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas       777 Oct 13 17:23 YzDNDmtF3R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmeFTMDmfGRwVo.diag
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas      8788 Oct 13 17:23 runtime_log.err
[2025-10-13 17:23:35] -rw-r--r--. 1 boincer umatlas     23338 Oct 13 17:23 stderr.txt
[2025-10-13 17:23:35] HITS file was successfully produced:
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas 196125968 Oct 13 17:22 shared/HITS.pool.root.1
[2025-10-13 17:23:35]  *** Contents of shared directory: ***
[2025-10-13 17:23:35] total 408628
[2025-10-13 17:23:35] -rw-r--r--. 3 boincer umatlas 220367285 Oct 13 14:25 ATLAS.root_0
[2025-10-13 17:23:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 14:25 start_atlas.sh
[2025-10-13 17:23:35] -rw-r--r--. 2 boincer umatlas    569675 Oct 13 14:25 input.tar.gz
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas 196125968 Oct 13 17:22 HITS.pool.root.1
[2025-10-13 17:23:35] -rw-------. 1 boincer umatlas   1341440 Oct 13 17:23 result.tar.gz
17:23:37 (1149084): run_atlas exited; CPU time 32745.705597
17:23:37 (1149084): called boinc_finish(0)

</stderr_txt>
]]>

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