Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:39:31 (2924017): wrapper (7.7.26015): starting
13:39:31 (2924017): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 13:39:31] Arguments: --nthreads 9
[2025-10-13 13:39:31] Threads: 9
[2025-10-13 13:39:31] Checking for CVMFS
[2025-10-13 13:39:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:39:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:39:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:39:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:39:31] 2.13.2.0 601499 131012 495968 151668 0 500 27493169 32935936 33155 16776704 0 472588782 99.684 385967108 16682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 13:39:31] CVMFS is ok
[2025-10-13 13:39:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:39:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:39:31] Further information can be found at the LHC@home message board.
[2025-10-13 13:39:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:39:31] Checking for apptainer binary...
[2025-10-13 13:39:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:39:31] Running /usr/bin/apptainer --version
[2025-10-13 13:39:31] apptainer version 1.4.3-1.el9
[2025-10-13 13:39:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:39:32] c7-16-9.aglt2.org
[2025-10-13 13:39:32] apptainer works
[2025-10-13 13:39:32] Set ATHENA_PROC_NUMBER=9
[2025-10-13 13:39:32] Set ATHENA_CORE_NUMBER=9
[2025-10-13 13:39:32] Starting ATLAS job with PandaID=6832048458
[2025-10-13 13:39:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:02:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:02:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/d9/log.46376905._097846.job.log.tgz.1
[2025-10-13 15:02:02]  workdir=None
[2025-10-13 15:02:02] ]
[2025-10-13 15:02:02] 2025-10-13 19:01:08,606 | INFO     | transferring file log.46376905._097846.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832048458/log.46376905._097846.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 15:02:02] 2025-10-13 19:01:08,607 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832048458/log.46376905._097846.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._097846.job
[2025-10-13 15:02:02] 2025-10-13 19:01:08,632 | INFO     | adding to output.list: log.46376905._097846.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/d9/log.46376905._097846.job.log.tg
[2025-10-13 15:02:02] 2025-10-13 19:01:08,633 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 15:02:02] 2025-10-13 19:01:08,633 | INFO     | summary of transferred files:
[2025-10-13 15:02:02] 2025-10-13 19:01:08,633 | INFO     |  -- lfn=log.46376905._097846.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 15:02:02] 2025-10-13 19:01:08,633 | INFO     | stage-out finished correctly
[2025-10-13 15:02:02] 2025-10-13 19:01:09,028 | INFO     | time since job start (4882s) is within the limit (172800.0s)
[2025-10-13 15:02:02] 2025-10-13 19:01:09,685 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 15:02:02] 2025-10-13 19:01:10,481 | INFO     | monitor loop #331: job 0:6832048458 is in state 'finished'
[2025-10-13 15:02:02] 2025-10-13 19:01:10,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:02:02] 2025-10-13 19:01:11,034 | INFO     | time since job start (4884s) is within the limit (172800.0s)
[2025-10-13 15:02:02] 2025-10-13 19:01:12,338 | INFO     | job 6832048458 has state=finished
[2025-10-13 15:02:02] 2025-10-13 19:01:12,338 | INFO     | preparing for final server update for job 6832048458 in state='finished'
[2025-10-13 15:02:02] 2025-10-13 19:01:12,339 | INFO     | this job has now completed (state=finished)
[2025-10-13 15:02:02] 2025-10-13 19:01:12,339 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 15:02:02] 2025-10-13 19:01:12,339 | INFO     | log transfer has been attempted: DONE
[2025-10-13 15:02:02] 2025-10-13 19:01:12,339 | INFO     | job 6832048458 has finished - writing final server update
[2025-10-13 15:02:02] 2025-10-13 19:01:12,339 | INFO     | total number of processed events: 400 (read)
[2025-10-13 15:02:02] 2025-10-13 19:01:12,355 | INFO     | executing command: lscpu
[2025-10-13 15:02:02] 2025-10-13 19:01:12,483 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 15:02:02] 2025-10-13 19:01:12,998 | INFO     | monitor loop #332: job 0:6832048458 is in state 'finished'
[2025-10-13 15:02:02] 2025-10-13 19:01:13,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:02:02] 2025-10-13 19:01:13,022 | INFO     | PID=2928332 has CPU usage=17.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 15:02:02] 2025-10-13 19:01:13,022 | INFO     | .. there are 48 such processes running
[2025-10-13 15:02:02] 2025-10-13 19:01:14,028 | INFO     | time since job start (4887s) is within the limit (172800.0s)
[2025-10-13 15:02:02] 2025-10-13 19:01:15,516 | INFO     | monitor loop #333: job 0:6832048458 is in state 'finished'
[2025-10-13 15:02:02] 2025-10-13 19:01:15,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:02:02] 2025-10-13 19:01:16,038 | INFO     | time since job start (4889s) is within the limit (172800.0s)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,021 | INFO     | monitor loop #334: job 0:6832048458 is in state 'finished'
[2025-10-13 15:02:02] 2025-10-13 19:01:18,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,045 | INFO     | time since job start (4891s) is within the limit (172800.0s)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,677 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 15:02:02] 2025-10-13 19:01:18,683 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3116.3585520833317
[2025-10-13 15:02:02] 2025-10-13 19:01:18,697 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832048458/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,698 | INFO     | extracted standard info from prmon json
[2025-10-13 15:02:02] 2025-10-13 19:01:18,699 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 15:02:02] 2025-10-13 19:01:18,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 15:02:02] 2025-10-13 19:01:18,699 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 15:02:02] 2025-10-13 19:01:18,699 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 15:02:02] 2025-10-13 19:01:18,700 | INFO     | fitting pss+swap vs Time
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | sum of square deviations: 120605052.0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | sum of deviations: -13645982430.0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | mean x: 1760379721.0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | mean y: 2539648.178082192
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | -- intersect: 199182510507.89215
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | intersect: 199182510507.89215
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | chi2: 0.14540040794914083
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | -- intersect: 199182510507.89215
[2025-10-13 15:02:02] 2025-10-13 19:01:18,701 | INFO     | current memory leak: -113.15 B/s (using 73 data points, chi2=0.15)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | could have reported an average CPU frequency of 3192 MHz (6 samples)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | ..............................
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . Timing measurements:
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . get job = 0 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . initial setup = 3 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . payload setup = 8 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . stage-in = 0 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . payload execution = 4852 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . stage-out = 0 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | . log creation = 0 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,702 | INFO     | ..............................
[2025-10-13 15:02:02] 2025-10-13 19:01:18,779 | INFO     | 
[2025-10-13 15:02:02] 2025-10-13 19:01:18,779 | INFO     | job summary report
[2025-10-13 15:02:02] 2025-10-13 19:01:18,779 | INFO     | --------------------------------------------------
[2025-10-13 15:02:02] 2025-10-13 19:01:18,779 | INFO     | PanDA job id: 6832048458
[2025-10-13 15:02:02] 2025-10-13 19:01:18,779 | INFO     | task id: 46376905
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | errors: (none)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | pilot state: finished 
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | transexitcode: 0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | exeerrorcode: 0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | exeerrordiag: 
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | exitcode: 0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | exitmsg: OK
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | cpuconsumptiontime: 27823 s
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | nevents: 400
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | neventsw: 0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | pid: 2941727
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | pgrp: 2941727
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | corecount: 9
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | event service: False
[2025-10-13 15:02:02] 2025-10-13 19:01:18,780 | INFO     | sizes: {0: 2348645, 1: 2348844, 7: 2349106, 12: 2349134, 4862: 2375580, 4863: 2384578, 4864: 2384762, 4873: 2384956}
[2025-10-13 15:02:02] 2025-10-13 19:01:18,781 | INFO     | --------------------------------------------------
[2025-10-13 15:02:02] 2025-10-13 19:01:18,781 | INFO     | 
[2025-10-13 15:02:02] 2025-10-13 19:01:18,781 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 15:02:02] 2025-10-13 19:01:18,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | job 6832048458 has completed (purged errors)
[2025-10-13 15:02:02] 2025-10-13 19:01:18,907 | INFO     | overall cleanup function is called
[2025-10-13 15:02:02] 2025-10-13 19:01:19,918 | INFO     | --- collectZombieJob: --- 10, [2941727]
[2025-10-13 15:02:02] 2025-10-13 19:01:19,918 | INFO     | zombie collector waiting for pid 2941727
[2025-10-13 15:02:02] 2025-10-13 19:01:19,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:02:02] 2025-10-13 19:01:19,919 | INFO     | collected zombie processes
[2025-10-13 15:02:02] 2025-10-13 19:01:19,919 | INFO     | will attempt to kill all subprocesses of pid=2941727
[2025-10-13 15:02:02] 2025-10-13 19:01:20,506 | INFO     | process IDs to be killed: [2941727] (in reverse order)
[2025-10-13 15:02:02] 2025-10-13 19:01:20,689 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:02:02] 2025-10-13 19:01:20,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:02:02] 2025-10-13 19:01:20,713 | INFO     | did not find any defunct processes belonging to 2941727
[2025-10-13 15:02:02] 2025-10-13 19:01:20,736 | INFO     | did not find any defunct processes belonging to 2941727
[2025-10-13 15:02:02] 2025-10-13 19:01:20,737 | INFO     | ready for new job
[2025-10-13 15:02:02] 2025-10-13 19:01:20,737 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:02:02] 2025-10-13 19:01:20,738 | INFO     | ***************************************
[2025-10-13 15:02:02] 2025-10-13 19:01:20,738 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 15:02:02] 2025-10-13 19:01:20,738 | INFO     | ***************************************
[2025-10-13 15:02:02] 2025-10-13 19:01:20,738 | INFO     | 
[2025-10-13 15:02:02] 2025-10-13 19:01:20,758 | INFO     | architecture information:
[2025-10-13 15:02:02] 2025-10-13 19:01:20,758 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:02:02] 2025-10-13 19:01:20,783 | INFO     | cat /etc/os-release:
[2025-10-13 15:02:02] NAME="CentOS Linux"
[2025-10-13 15:02:02] VERSION="7 (Core)"
[2025-10-13 15:02:02] ID="centos"
[2025-10-13 15:02:02] ID_LIKE="rhel fedora"
[2025-10-13 15:02:02] VERSION_ID="7"
[2025-10-13 15:02:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:02:02] ANSI_COLOR="0;31"
[2025-10-13 15:02:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:02:02] HOME_URL="https://www.centos.org/"
[2025-10-13 15:02:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:02:02] 
[2025-10-13 15:02:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:02:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:02:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:02:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:02:02] 
[2025-10-13 15:02:02] 2025-10-13 19:01:20,783 | INFO     | ***************************************
[2025-10-13 15:02:02] 2025-10-13 19:01:21,286 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 15:02:02] 2025-10-13 19:01:21,306 | INFO     | sufficient remaining disk space (76626788352 B)
[2025-10-13 15:02:02] 2025-10-13 19:01:21,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:02:02] 2025-10-13 19:01:21,307 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:02:02] 2025-10-13 19:01:21,307 | INFO     | update_server=False
[2025-10-13 15:02:02] 2025-10-13 19:01:21,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:02:02] 2025-10-13 19:01:21,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:02:02] 2025-10-13 19:01:21,532 | INFO     | aborting loop
[2025-10-13 15:02:02] 2025-10-13 19:01:21,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:02:02] 2025-10-13 19:01:22,239 | INFO     | all data control threads have been joined
[2025-10-13 15:02:02] 2025-10-13 19:01:22,312 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:22,334 | INFO     | all payload control threads have been joined
[2025-10-13 15:02:02] 2025-10-13 19:01:22,420 | INFO     | all job control threads have been joined
[2025-10-13 15:02:02] 2025-10-13 19:01:22,538 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:22,765 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:22,788 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:22,938 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,144 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,197 | INFO     | [job] validate thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,244 | INFO     | [data] control thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,341 | INFO     | [payload] control thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,413 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,429 | INFO     | [job] control thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,740 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,760 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:23,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:02:02] 2025-10-13 19:01:24,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:02:02] 2025-10-13 19:01:24,789 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:28,796 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:32,323 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:02:02] 2025-10-13 19:01:33,329 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:02:02] 2025-10-13 19:01:51,884 | INFO     | PID=2928332 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:02:02] 2025-10-13 19:01:51,888 | INFO     | .. there are 48 such processes running
[2025-10-13 15:02:02] 2025-10-13 19:01:51,888 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:02:02] 2025-10-13 19:01:51,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:02:02] 2025-10-13 19:01:51,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:02:02] 2025-10-13 19:01:55,029 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:02:02] 2025-10-13 19:01:57,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714612807488)>', '<ExcThread(monitor, started 140714126075648)>']
[2025-10-13 15:02:02] 2025-10-13 19:01:57,929 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:02:02] 2025-10-13 19:01:57,929 | INFO     | [monitor] control thread has ended
[2025-10-13 15:02:02] 2025-10-13 19:02:02,061 | INFO     | all workflow threads have been joined
[2025-10-13 15:02:02] 2025-10-13 19:02:02,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:02:02] 2025-10-13 19:02:02,062 | INFO     | traces error code: 0
[2025-10-13 15:02:02] 2025-10-13 19:02:02,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:02:02] 2025-10-13 19:02:02,224 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:02:02] 2025-10-13 19:02:02,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:02:02] 2025-10-13 19:02:02,230 [wrapper] pilotpid: 2928332
[2025-10-13 15:02:02] 2025-10-13 19:02:02,238 [wrapper] Pilot exit status: 0
[2025-10-13 15:02:02] 2025-10-13 19:02:02,254 [wrapper] pandaids: 6832048458
[2025-10-13 15:02:02] 2025-10-13 19:02:02,402 [wrapper] cleanup supervisor_pilot 3470628 2928333
[2025-10-13 15:02:02] 2025-10-13 19:02:02,409 [wrapper] Test setup, not cleaning
[2025-10-13 15:02:02] 2025-10-13 19:02:02,413 [wrapper] apfmon messages muted
[2025-10-13 15:02:02] 2025-10-13 19:02:02,416 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:02:02] 2025-10-13 19:02:02,419 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:02:02]  *** Error codes and diagnostics ***
[2025-10-13 15:02:02]     "exeErrorCode": 0,
[2025-10-13 15:02:02]     "exeErrorDiag": "",
[2025-10-13 15:02:02]     "pilotErrorCode": 0,
[2025-10-13 15:02:02]     "pilotErrorDiag": "",
[2025-10-13 15:02:02]  *** Listing of results directory ***
[2025-10-13 15:02:02] total 392612
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 18:14 pilot3.tar.gz
[2025-10-13 15:02:02] -rwx------. 1 boincer umatlas     36292 Oct  5 18:21 runpilot2-wrapper.sh
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 18:21 queuedata.json
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas       100 Oct 13 13:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:02:02] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 13:39 run_atlas
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas       105 Oct 13 13:39 job.xml
[2025-10-13 15:02:02] -rw-r--r--. 2 boincer umatlas 214486205 Oct 13 13:39 EVNT.46376901._003612.pool.root.1
[2025-10-13 15:02:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 13:39 start_atlas.sh
[2025-10-13 15:02:02] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 13:39 shared
[2025-10-13 15:02:02] -rw-r--r--. 2 boincer umatlas    565601 Oct 13 13:39 input.tar.gz
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas         0 Oct 13 13:39 boinc_lockfile
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas      2519 Oct 13 13:39 pandaJob.out
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas    972791 Oct 13 13:39 agis_schedconf.cvmfs.json
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas   1560580 Oct 13 13:39 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:02:02] drwx------. 4 boincer umatlas      4096 Oct 13 13:39 pilot3
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas      6933 Oct 13 15:00 init_data.xml
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas 181570685 Oct 13 15:00 HITS.46376905._097846.pool.root.1
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas       530 Oct 13 15:00 boinc_task_state.xml
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas      1035 Oct 13 15:01 memory_monitor_summary.json
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas    355850 Oct 13 15:01 log.46376905._097846.job.log.tgz.1
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas        95 Oct 13 15:01 pilot_heartbeat.json
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas      7782 Oct 13 15:01 heartbeat.json
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 15:01 boinc_mmap_file
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas        27 Oct 13 15:01 wrapper_checkpoint.txt
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas      4896 Oct 13 15:02 pilotlog.txt
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas    692569 Oct 13 15:02 log.46376905._097846.job.log.1
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas       357 Oct 13 15:02 output.list
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas       620 Oct 13 15:02 runtime_log
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas   1064960 Oct 13 15:02 result.tar.gz
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 15:02 runtime_log.err
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas       651 Oct 13 15:02 f0wKDmkHmP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgiHMDmGMwBAn.diag
[2025-10-13 15:02:02] -rw-r--r--. 1 boincer umatlas     22362 Oct 13 15:02 stderr.txt
[2025-10-13 15:02:02] HITS file was successfully produced:
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas 181570685 Oct 13 15:00 shared/HITS.pool.root.1
[2025-10-13 15:02:02]  *** Contents of shared directory: ***
[2025-10-13 15:02:02] total 388392
[2025-10-13 15:02:02] -rw-r--r--. 2 boincer umatlas 214486205 Oct 13 13:39 ATLAS.root_0
[2025-10-13 15:02:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 13:39 start_atlas.sh
[2025-10-13 15:02:02] -rw-r--r--. 2 boincer umatlas    565601 Oct 13 13:39 input.tar.gz
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas 181570685 Oct 13 15:00 HITS.pool.root.1
[2025-10-13 15:02:02] -rw-------. 1 boincer umatlas   1064960 Oct 13 15:02 result.tar.gz
15:02:03 (2924017): run_atlas exited; CPU time 28013.193500
15:02:03 (2924017): called boinc_finish(0)

</stderr_txt>
]]>

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