Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:45 (999): wrapper (7.7.26015): starting
13:31:45 (999): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 13:31:45] Arguments: --nthreads 12
[2025-10-13 13:31:45] Threads: 12
[2025-10-13 13:31:45] Checking for CVMFS
[2025-10-13 13:31:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:31:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:31:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:31:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:31:45] 2.11.2.0 2937 224625 102292 151668 0 1 11159807 20275200 1 130560 1 110599961 99.984 13799403 13187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 13:31:45] CVMFS is ok
[2025-10-13 13:31:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:31:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:31:45] Further information can be found at the LHC@home message board.
[2025-10-13 13:31:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:31:45] Checking for apptainer binary...
[2025-10-13 13:31:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:31:45] Running /usr/bin/apptainer --version
[2025-10-13 13:31:45] apptainer version 1.3.2-1.el7
[2025-10-13 13:31:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:31:47] c-205-8.aglt2.org
[2025-10-13 13:31:47] apptainer works
[2025-10-13 13:31:47] Set ATHENA_PROC_NUMBER=12
[2025-10-13 13:31:47] Set ATHENA_CORE_NUMBER=12
[2025-10-13 13:31:47] Starting ATLAS job with PandaID=6832323210
[2025-10-13 13:31:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 14:37:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 14:37:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 14:37:15]  replicas=None
[2025-10-13 14:37:15]  scope=mc23_13p6TeV
[2025-10-13 14:37:15]  status=None
[2025-10-13 14:37:15]  status_code=0
[2025-10-13 14:37:15]  storage_token=
[2025-10-13 14:37:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832323210/log.46376905._104886.job.log.tgz.1
[2025-10-13 14:37:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/3f/log.46376905._104886.job.log.tgz.1
[2025-10-13 14:37:15]  workdir=None
[2025-10-13 14:37:15] ]
[2025-10-13 14:37:15] 2025-10-13 18:36:17,894 | INFO     | transferring file log.46376905._104886.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832323210/log.46376905._104886.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 14:37:15] 2025-10-13 18:36:17,894 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832323210/log.46376905._104886.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._104886.job
[2025-10-13 14:37:15] 2025-10-13 18:36:17,917 | INFO     | adding to output.list: log.46376905._104886.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5c/3f/log.46376905._104886.job.log.tg
[2025-10-13 14:37:15] 2025-10-13 18:36:17,918 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 14:37:15] 2025-10-13 18:36:17,918 | INFO     | summary of transferred files:
[2025-10-13 14:37:15] 2025-10-13 18:36:17,918 | INFO     |  -- lfn=log.46376905._104886.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 14:37:15] 2025-10-13 18:36:17,918 | INFO     | stage-out finished correctly
[2025-10-13 14:37:15] 2025-10-13 18:36:18,003 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 14:37:15] 2025-10-13 18:36:18,254 | INFO     | monitor loop #288: job 0:6832323210 is in state 'finished'
[2025-10-13 14:37:15] 2025-10-13 18:36:18,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:37:15] 2025-10-13 18:36:19,049 | INFO     | time since job start (3856s) is within the limit (172800.0s)
[2025-10-13 14:37:15] 2025-10-13 18:36:20,281 | INFO     | job 6832323210 has state=finished
[2025-10-13 14:37:15] 2025-10-13 18:36:20,281 | INFO     | preparing for final server update for job 6832323210 in state='finished'
[2025-10-13 14:37:15] 2025-10-13 18:36:20,282 | INFO     | this job has now completed (state=finished)
[2025-10-13 14:37:15] 2025-10-13 18:36:20,282 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 14:37:15] 2025-10-13 18:36:20,282 | INFO     | log transfer has been attempted: DONE
[2025-10-13 14:37:15] 2025-10-13 18:36:20,283 | INFO     | job 6832323210 has finished - writing final server update
[2025-10-13 14:37:15] 2025-10-13 18:36:20,283 | INFO     | total number of processed events: 400 (read)
[2025-10-13 14:37:15] 2025-10-13 18:36:20,284 | INFO     | executing command: lscpu
[2025-10-13 14:37:15] 2025-10-13 18:36:20,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 14:37:15] 2025-10-13 18:36:20,757 | INFO     | monitor loop #289: job 0:6832323210 is in state 'finished'
[2025-10-13 14:37:15] 2025-10-13 18:36:20,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:37:15] 2025-10-13 18:36:21,055 | INFO     | time since job start (3858s) is within the limit (172800.0s)
[2025-10-13 14:37:15] 2025-10-13 18:36:22,177 | INFO     | PID=4959 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 14:37:15] 2025-10-13 18:36:23,178 | INFO     | time since job start (3860s) is within the limit (172800.0s)
[2025-10-13 14:37:15] 2025-10-13 18:36:23,260 | INFO     | monitor loop #290: job 0:6832323210 is in state 'finished'
[2025-10-13 14:37:15] 2025-10-13 18:36:23,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,021 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 14:37:15] 2025-10-13 18:36:25,024 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-10-13 14:37:15] 2025-10-13 18:36:25,027 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832323210/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,028 | INFO     | extracted standard info from prmon json
[2025-10-13 14:37:15] 2025-10-13 18:36:25,028 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 14:37:15] 2025-10-13 18:36:25,028 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 14:37:15] 2025-10-13 18:36:25,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 14:37:15] 2025-10-13 18:36:25,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 14:37:15] 2025-10-13 18:36:25,030 | INFO     | fitting pss+swap vs Time
[2025-10-13 14:37:15] 2025-10-13 18:36:25,031 | INFO     | sum of square deviations: 54438230.0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,031 | INFO     | sum of deviations: -5847566140.0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,031 | INFO     | mean x: 1760378734.5
[2025-10-13 14:37:15] 2025-10-13 18:36:25,031 | INFO     | mean y: 2839990.714285714
[2025-10-13 14:37:15] 2025-10-13 18:36:25,031 | INFO     | -- intersect: 189096627232.47894
[2025-10-13 14:37:15] 2025-10-13 18:36:25,031 | INFO     | intersect: 189096627232.47894
[2025-10-13 14:37:15] 2025-10-13 18:36:25,032 | INFO     | chi2: 0.04838482966712237
[2025-10-13 14:37:15] 2025-10-13 18:36:25,032 | INFO     | -- intersect: 189096627232.47894
[2025-10-13 14:37:15] 2025-10-13 18:36:25,032 | INFO     | current memory leak: -107.42 B/s (using 56 data points, chi2=0.05)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,032 | INFO     | could have reported an average CPU frequency of 2021 MHz (6 samples)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,032 | INFO     | ..............................
[2025-10-13 14:37:15] 2025-10-13 18:36:25,032 | INFO     | . Timing measurements:
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . get job = 0 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . initial setup = 2 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . payload setup = 7 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . stage-in = 0 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . payload execution = 3825 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . stage-out = 0 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | . log creation = 0 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,033 | INFO     | ..............................
[2025-10-13 14:37:15] 2025-10-13 18:36:25,117 | INFO     | 
[2025-10-13 14:37:15] 2025-10-13 18:36:25,117 | INFO     | job summary report
[2025-10-13 14:37:15] 2025-10-13 18:36:25,117 | INFO     | --------------------------------------------------
[2025-10-13 14:37:15] 2025-10-13 18:36:25,117 | INFO     | PanDA job id: 6832323210
[2025-10-13 14:37:15] 2025-10-13 18:36:25,117 | INFO     | task id: 46376905
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | errors: (none)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | pilot state: finished 
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | transexitcode: 0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | exeerrorcode: 0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | exeerrordiag: 
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | exitcode: 0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,118 | INFO     | exitmsg: OK
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | cpuconsumptiontime: 41347 s
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | nevents: 400
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | neventsw: 0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | pid: 11371
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | pgrp: 11371
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | corecount: 12
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | event service: False
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 3836: 2374914, 3837: 2374913, 3838: 2384151, 3845: 2384289}
[2025-10-13 14:37:15] 2025-10-13 18:36:25,119 | INFO     | --------------------------------------------------
[2025-10-13 14:37:15] 2025-10-13 18:36:25,120 | INFO     | 
[2025-10-13 14:37:15] 2025-10-13 18:36:25,120 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 14:37:15] 2025-10-13 18:36:25,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,147 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 14:37:15] 2025-10-13 18:36:25,147 | INFO     | job 6832323210 has completed (purged errors)
[2025-10-13 14:37:15] 2025-10-13 18:36:25,147 | INFO     | overall cleanup function is called
[2025-10-13 14:37:15] 2025-10-13 18:36:26,155 | INFO     | --- collectZombieJob: --- 10, [11371]
[2025-10-13 14:37:15] 2025-10-13 18:36:26,155 | INFO     | zombie collector waiting for pid 11371
[2025-10-13 14:37:15] 2025-10-13 18:36:26,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 14:37:15] 2025-10-13 18:36:26,156 | INFO     | collected zombie processes
[2025-10-13 14:37:15] 2025-10-13 18:36:26,156 | INFO     | will attempt to kill all subprocesses of pid=11371
[2025-10-13 14:37:15] 2025-10-13 18:36:26,249 | INFO     | process IDs to be killed: [11371] (in reverse order)
[2025-10-13 14:37:15] 2025-10-13 18:36:26,324 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 14:37:15] 2025-10-13 18:36:26,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 14:37:15] 2025-10-13 18:36:26,328 | INFO     | did not find any defunct processes belonging to 11371
[2025-10-13 14:37:15] 2025-10-13 18:36:26,331 | INFO     | did not find any defunct processes belonging to 11371
[2025-10-13 14:37:15] 2025-10-13 18:36:26,331 | INFO     | ready for new job
[2025-10-13 14:37:15] 2025-10-13 18:36:26,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 14:37:15] 2025-10-13 18:36:26,332 | INFO     | ***************************************
[2025-10-13 14:37:15] 2025-10-13 18:36:26,332 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 14:37:15] 2025-10-13 18:36:26,332 | INFO     | ***************************************
[2025-10-13 14:37:15] 2025-10-13 18:36:26,332 | INFO     | 
[2025-10-13 14:37:15] 2025-10-13 18:36:26,333 | INFO     | architecture information:
[2025-10-13 14:37:15] 2025-10-13 18:36:26,333 | INFO     | executing command: cat /etc/os-release
[2025-10-13 14:37:15] 2025-10-13 18:36:26,347 | INFO     | cat /etc/os-release:
[2025-10-13 14:37:15] NAME="CentOS Linux"
[2025-10-13 14:37:15] VERSION="7 (Core)"
[2025-10-13 14:37:15] ID="centos"
[2025-10-13 14:37:15] ID_LIKE="rhel fedora"
[2025-10-13 14:37:15] VERSION_ID="7"
[2025-10-13 14:37:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 14:37:15] ANSI_COLOR="0;31"
[2025-10-13 14:37:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 14:37:15] HOME_URL="https://www.centos.org/"
[2025-10-13 14:37:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 14:37:15] 
[2025-10-13 14:37:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 14:37:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 14:37:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 14:37:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 14:37:15] 
[2025-10-13 14:37:15] 2025-10-13 18:36:26,348 | INFO     | ***************************************
[2025-10-13 14:37:15] 2025-10-13 18:36:26,851 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 14:37:15] 2025-10-13 18:36:26,870 | INFO     | sufficient remaining disk space (29386342400 B)
[2025-10-13 14:37:15] 2025-10-13 18:36:26,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 14:37:15] 2025-10-13 18:36:26,871 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 14:37:15] 2025-10-13 18:36:26,871 | INFO     | update_server=False
[2025-10-13 14:37:15] 2025-10-13 18:36:26,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 14:37:15] 2025-10-13 18:36:26,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 14:37:15] 2025-10-13 18:36:26,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:37:15] 2025-10-13 18:36:26,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 14:37:15] 2025-10-13 18:36:26,873 | INFO     | aborting loop
[2025-10-13 14:37:15] 2025-10-13 18:36:27,877 | INFO     | [job] retrieve thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:27,878 | INFO     | [job] queue monitor thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:27,879 | INFO     | [job] job monitor thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:27,930 | INFO     | all data control threads have been joined
[2025-10-13 14:37:15] 2025-10-13 18:36:28,239 | INFO     | all payload control threads have been joined
[2025-10-13 14:37:15] 2025-10-13 18:36:28,258 | INFO     | [payload] failed_post thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,260 | INFO     | [job] validate thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,418 | INFO     | all job control threads have been joined
[2025-10-13 14:37:15] 2025-10-13 18:36:28,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 14:37:15] 2025-10-13 18:36:28,630 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,640 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,818 | INFO     | [payload] validate_post thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,877 | INFO     | [data] copytool_out thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,936 | INFO     | [data] control thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:28,948 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:29,066 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:29,236 | INFO     | [data] copytool_in thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:29,245 | INFO     | [payload] control thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:29,423 | INFO     | [job] control thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:32,603 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 14:37:15] 2025-10-13 18:36:56,389 | INFO     | PID=4959 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 14:37:15] 2025-10-13 18:36:56,390 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 14:37:15] 2025-10-13 18:36:56,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 14:37:15] 2025-10-13 18:36:56,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 14:37:15] 2025-10-13 18:37:09,152 | INFO     | [monitor] cgroup control has ended
[2025-10-13 14:37:15] 2025-10-13 18:37:10,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935019403072)>', '<ExcThread(monitor, started 139934455293696)>']
[2025-10-13 14:37:15] 2025-10-13 18:37:10,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 14:37:15] 2025-10-13 18:37:10,462 | INFO     | [monitor] control thread has ended
[2025-10-13 14:37:15] 2025-10-13 18:37:15,032 | INFO     | all workflow threads have been joined
[2025-10-13 14:37:15] 2025-10-13 18:37:15,032 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 14:37:15] 2025-10-13 18:37:15,033 | INFO     | traces error code: 0
[2025-10-13 14:37:15] 2025-10-13 18:37:15,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 14:37:15] 2025-10-13 18:37:15,130 [wrapper] ==== pilot stdout END ====
[2025-10-13 14:37:15] 2025-10-13 18:37:15,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 14:37:15] 2025-10-13 18:37:15,138 [wrapper] pilotpid: 4959
[2025-10-13 14:37:15] 2025-10-13 18:37:15,142 [wrapper] Pilot exit status: 0
[2025-10-13 14:37:15] 2025-10-13 18:37:15,159 [wrapper] pandaids: 6832323210
[2025-10-13 14:37:15] 2025-10-13 18:37:15,205 [wrapper] cleanup supervisor_pilot 25423 4960
[2025-10-13 14:37:15] 2025-10-13 18:37:15,208 [wrapper] Test setup, not cleaning
[2025-10-13 14:37:15] 2025-10-13 18:37:15,213 [wrapper] apfmon messages muted
[2025-10-13 14:37:15] 2025-10-13 18:37:15,217 [wrapper] ==== wrapper stdout END ====
[2025-10-13 14:37:15] 2025-10-13 18:37:15,221 [wrapper] ==== wrapper stderr END ====
[2025-10-13 14:37:15]  *** Error codes and diagnostics ***
[2025-10-13 14:37:15]     "exeErrorCode": 0,
[2025-10-13 14:37:15]     "exeErrorDiag": "",
[2025-10-13 14:37:15]     "pilotErrorCode": 0,
[2025-10-13 14:37:15]     "pilotErrorDiag": "",
[2025-10-13 14:37:15]  *** Listing of results directory ***
[2025-10-13 14:37:15] total 387928
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas      5112 Oct  6 00:08 queuedata.json
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas    552446 Oct  6 00:08 pilot3.tar.gz
[2025-10-13 14:37:15] -rwx------ 1 boincer umatlas     36292 Oct  6 00:10 runpilot2-wrapper.sh
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas       100 Oct 13 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 14:37:15] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 13:31 run_atlas
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas       105 Oct 13 13:31 job.xml
[2025-10-13 14:37:15] -rw-r--r-- 2 boincer umatlas 213489618 Oct 13 13:31 EVNT.46376901._003884.pool.root.1
[2025-10-13 14:37:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 13:31 start_atlas.sh
[2025-10-13 14:37:15] drwxrwx--x 2 boincer umatlas      4096 Oct 13 13:31 shared
[2025-10-13 14:37:15] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 13:31 input.tar.gz
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas         0 Oct 13 13:31 boinc_lockfile
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas      2519 Oct 13 13:31 pandaJob.out
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas    972791 Oct 13 13:32 agis_schedconf.cvmfs.json
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas   1560580 Oct 13 13:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 14:37:15] drwx------ 4 boincer umatlas      4096 Oct 13 13:32 pilot3
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 14:30 init_data.xml
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas 177974689 Oct 13 14:35 HITS.46376905._104886.pool.root.1
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas       529 Oct 13 14:36 boinc_task_state.xml
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas      1047 Oct 13 14:36 memory_monitor_summary.json
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas    380850 Oct 13 14:36 log.46376905._104886.job.log.tgz.1
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas      7855 Oct 13 14:36 heartbeat.json
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas        27 Oct 13 14:36 wrapper_checkpoint.txt
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 14:36 boinc_mmap_file
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas        95 Oct 13 14:36 pilot_heartbeat.json
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas      4745 Oct 13 14:37 pilotlog.txt
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas    565711 Oct 13 14:37 log.46376905._104886.job.log.1
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas       357 Oct 13 14:37 output.list
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas       620 Oct 13 14:37 runtime_log
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas    962560 Oct 13 14:37 result.tar.gz
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas       658 Oct 13 14:37 VuYMDmSjrP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmWSNDmGi9mdm.diag
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas      8700 Oct 13 14:37 runtime_log.err
[2025-10-13 14:37:15] -rw-r--r-- 1 boincer umatlas     21959 Oct 13 14:37 stderr.txt
[2025-10-13 14:37:15] HITS file was successfully produced:
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas 177974689 Oct 13 14:35 shared/HITS.pool.root.1
[2025-10-13 14:37:15]  *** Contents of shared directory: ***
[2025-10-13 14:37:15] total 383808
[2025-10-13 14:37:15] -rw-r--r-- 2 boincer umatlas 213489618 Oct 13 13:31 ATLAS.root_0
[2025-10-13 14:37:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 13:31 start_atlas.sh
[2025-10-13 14:37:15] -rw-r--r-- 2 boincer umatlas    565602 Oct 13 13:31 input.tar.gz
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas 177974689 Oct 13 14:35 HITS.pool.root.1
[2025-10-13 14:37:15] -rw------- 1 boincer umatlas    962560 Oct 13 14:37 result.tar.gz
14:37:16 (999): run_atlas exited; CPU time 41318.668330
14:37:16 (999): called boinc_finish(0)

</stderr_txt>
]]>

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