Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:30:55 (30832): wrapper (7.7.26015): starting
13:30:55 (30832): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 13:30:55] Arguments: --nthreads 8
[2025-10-13 13:30:55] Threads: 8
[2025-10-13 13:30:55] Checking for CVMFS
[2025-10-13 13:30:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 13:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 13:30:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 13:30:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 13:30:55] 2.11.2.0 28294 54639 128100 151668 2 1 9706196 18432000 1 130560 0 50426151 99.975 2417427 33520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 13:30:55] CVMFS is ok
[2025-10-13 13:30:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 13:30:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 13:30:55] Further information can be found at the LHC@home message board.
[2025-10-13 13:30:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 13:30:55] Checking for apptainer binary...
[2025-10-13 13:30:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 13:30:55] Running /usr/bin/apptainer --version
[2025-10-13 13:30:55] apptainer version 1.3.2-1.el7
[2025-10-13 13:30:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 13:30:57] c-206-25.aglt2.org
[2025-10-13 13:30:57] apptainer works
[2025-10-13 13:30:57] Set ATHENA_PROC_NUMBER=8
[2025-10-13 13:30:57] Set ATHENA_CORE_NUMBER=8
[2025-10-13 13:30:57] Starting ATLAS job with PandaID=6831734193
[2025-10-13 13:30:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:08:36]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:08:36]  status=None
[2025-10-13 15:08:36]  status_code=0
[2025-10-13 15:08:36]  storage_token=
[2025-10-13 15:08:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831734193/log.46376905._087082.job.log.tgz.1
[2025-10-13 15:08:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/19/log.46376905._087082.job.log.tgz.1
[2025-10-13 15:08:36]  workdir=None
[2025-10-13 15:08:36] ]
[2025-10-13 15:08:36] 2025-10-13 19:07:55,618 | INFO     | transferring file log.46376905._087082.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831734193/log.46376905._087082.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 15:08:36] 2025-10-13 19:07:55,618 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831734193/log.46376905._087082.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._087082.job
[2025-10-13 15:08:36] 2025-10-13 19:07:55,640 | INFO     | adding to output.list: log.46376905._087082.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/19/log.46376905._087082.job.log.tg
[2025-10-13 15:08:36] 2025-10-13 19:07:55,641 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 15:08:36] 2025-10-13 19:07:55,641 | INFO     | summary of transferred files:
[2025-10-13 15:08:36] 2025-10-13 19:07:55,641 | INFO     |  -- lfn=log.46376905._087082.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 15:08:36] 2025-10-13 19:07:55,642 | INFO     | stage-out finished correctly
[2025-10-13 15:08:36] 2025-10-13 19:07:57,004 | INFO     | time since job start (5805s) is within the limit (172800.0s)
[2025-10-13 15:08:36] 2025-10-13 19:07:57,612 | INFO     | monitor loop #445: job 0:6831734193 is in state 'finished'
[2025-10-13 15:08:36] 2025-10-13 19:07:57,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:08:36] 2025-10-13 19:07:58,783 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 15:08:36] 2025-10-13 19:07:58,864 | INFO     | job 6831734193 has state=finished
[2025-10-13 15:08:36] 2025-10-13 19:07:58,865 | INFO     | preparing for final server update for job 6831734193 in state='finished'
[2025-10-13 15:08:36] 2025-10-13 19:07:58,865 | INFO     | this job has now completed (state=finished)
[2025-10-13 15:08:36] 2025-10-13 19:07:58,865 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 15:08:36] 2025-10-13 19:07:58,866 | INFO     | log transfer has been attempted: DONE
[2025-10-13 15:08:36] 2025-10-13 19:07:58,866 | INFO     | job 6831734193 has finished - writing final server update
[2025-10-13 15:08:36] 2025-10-13 19:07:58,866 | INFO     | total number of processed events: 400 (read)
[2025-10-13 15:08:36] 2025-10-13 19:07:58,867 | INFO     | executing command: lscpu
[2025-10-13 15:08:36] 2025-10-13 19:07:58,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 15:08:36] 2025-10-13 19:07:59,010 | INFO     | time since job start (5807s) is within the limit (172800.0s)
[2025-10-13 15:08:36] 2025-10-13 19:07:59,010 | INFO     | 5809s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 15:08:36] 2025-10-13 19:08:00,115 | INFO     | monitor loop #446: job 0:6831734193 is in state 'finished'
[2025-10-13 15:08:36] 2025-10-13 19:08:00,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:08:36] 2025-10-13 19:08:01,015 | INFO     | time since job start (5809s) is within the limit (172800.0s)
[2025-10-13 15:08:36] 2025-10-13 19:08:02,144 | INFO     | PID=2180 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 15:08:36] 2025-10-13 19:08:02,618 | INFO     | monitor loop #447: job 0:6831734193 is in state 'finished'
[2025-10-13 15:08:36] 2025-10-13 19:08:02,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,144 | INFO     | time since job start (5811s) is within the limit (172800.0s)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,501 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 15:08:36] 2025-10-13 19:08:03,505 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1651.4583333333333
[2025-10-13 15:08:36] 2025-10-13 19:08:03,508 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831734193/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,508 | INFO     | extracted standard info from prmon json
[2025-10-13 15:08:36] 2025-10-13 19:08:03,508 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 15:08:36] 2025-10-13 19:08:03,508 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 15:08:36] 2025-10-13 19:08:03,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 15:08:36] 2025-10-13 19:08:03,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 15:08:36] 2025-10-13 19:08:03,510 | INFO     | fitting pss+swap vs Time
[2025-10-13 15:08:36] 2025-10-13 19:08:03,511 | INFO     | sum of square deviations: 211285822.0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,511 | INFO     | sum of deviations: -15258592399.0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,511 | INFO     | mean x: 1760379659.5
[2025-10-13 15:08:36] 2025-10-13 19:08:03,511 | INFO     | mean y: 2605216.977272727
[2025-10-13 15:08:36] 2025-10-13 19:08:03,511 | INFO     | -- intersect: 127133311089.90096
[2025-10-13 15:08:36] 2025-10-13 19:08:03,512 | INFO     | intersect: 127133311089.90096
[2025-10-13 15:08:36] 2025-10-13 19:08:03,512 | INFO     | chi2: 0.07857738572893903
[2025-10-13 15:08:36] 2025-10-13 19:08:03,512 | INFO     | -- intersect: 127133311089.90096
[2025-10-13 15:08:36] 2025-10-13 19:08:03,512 | INFO     | current memory leak: -72.22 B/s (using 88 data points, chi2=0.08)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,512 | INFO     | could have reported an average CPU frequency of 1835 MHz (7 samples)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,512 | INFO     | ..............................
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . Timing measurements:
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . get job = 0 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . initial setup = 2 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . payload setup = 7 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . stage-in = 0 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . payload execution = 5775 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . stage-out = 0 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | . log creation = 0 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,513 | INFO     | ..............................
[2025-10-13 15:08:36] 2025-10-13 19:08:03,595 | INFO     | 
[2025-10-13 15:08:36] 2025-10-13 19:08:03,595 | INFO     | job summary report
[2025-10-13 15:08:36] 2025-10-13 19:08:03,596 | INFO     | --------------------------------------------------
[2025-10-13 15:08:36] 2025-10-13 19:08:03,596 | INFO     | PanDA job id: 6831734193
[2025-10-13 15:08:36] 2025-10-13 19:08:03,596 | INFO     | task id: 46376905
[2025-10-13 15:08:36] 2025-10-13 19:08:03,596 | INFO     | errors: (none)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,596 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 15:08:36] 2025-10-13 19:08:03,597 | INFO     | pilot state: finished 
[2025-10-13 15:08:36] 2025-10-13 19:08:03,597 | INFO     | transexitcode: 0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,597 | INFO     | exeerrorcode: 0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,597 | INFO     | exeerrordiag: 
[2025-10-13 15:08:36] 2025-10-13 19:08:03,597 | INFO     | exitcode: 0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,597 | INFO     | exitmsg: OK
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | cpuconsumptiontime: 42501 s
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | nevents: 400
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | neventsw: 0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | pid: 8672
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | pgrp: 8672
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | corecount: 8
[2025-10-13 15:08:36] 2025-10-13 19:08:03,598 | INFO     | event service: False
[2025-10-13 15:08:36] 2025-10-13 19:08:03,599 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 5786: 2375858, 5787: 2384856, 5790: 2384912, 5795: 2385234}
[2025-10-13 15:08:36] 2025-10-13 19:08:03,599 | INFO     | --------------------------------------------------
[2025-10-13 15:08:36] 2025-10-13 19:08:03,599 | INFO     | 
[2025-10-13 15:08:36] 2025-10-13 19:08:03,599 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 15:08:36] 2025-10-13 19:08:03,658 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,658 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,658 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,660 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:08:36] 2025-10-13 19:08:03,661 | INFO     | job 6831734193 has completed (purged errors)
[2025-10-13 15:08:36] 2025-10-13 19:08:03,661 | INFO     | overall cleanup function is called
[2025-10-13 15:08:36] 2025-10-13 19:08:04,668 | INFO     | --- collectZombieJob: --- 10, [8672]
[2025-10-13 15:08:36] 2025-10-13 19:08:04,668 | INFO     | zombie collector waiting for pid 8672
[2025-10-13 15:08:36] 2025-10-13 19:08:04,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:08:36] 2025-10-13 19:08:04,668 | INFO     | collected zombie processes
[2025-10-13 15:08:36] 2025-10-13 19:08:04,668 | INFO     | will attempt to kill all subprocesses of pid=8672
[2025-10-13 15:08:36] 2025-10-13 19:08:04,765 | INFO     | process IDs to be killed: [8672] (in reverse order)
[2025-10-13 15:08:36] 2025-10-13 19:08:04,817 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:08:36] 2025-10-13 19:08:04,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:08:36] 2025-10-13 19:08:04,821 | INFO     | did not find any defunct processes belonging to 8672
[2025-10-13 15:08:36] 2025-10-13 19:08:04,824 | INFO     | did not find any defunct processes belonging to 8672
[2025-10-13 15:08:36] 2025-10-13 19:08:04,824 | INFO     | ready for new job
[2025-10-13 15:08:36] 2025-10-13 19:08:04,824 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:08:36] 2025-10-13 19:08:04,826 | INFO     | ***************************************
[2025-10-13 15:08:36] 2025-10-13 19:08:04,826 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 15:08:36] 2025-10-13 19:08:04,826 | INFO     | ***************************************
[2025-10-13 15:08:36] 2025-10-13 19:08:04,826 | INFO     | 
[2025-10-13 15:08:36] 2025-10-13 19:08:04,827 | INFO     | architecture information:
[2025-10-13 15:08:36] 2025-10-13 19:08:04,827 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:08:36] 2025-10-13 19:08:04,842 | INFO     | cat /etc/os-release:
[2025-10-13 15:08:36] NAME="CentOS Linux"
[2025-10-13 15:08:36] VERSION="7 (Core)"
[2025-10-13 15:08:36] ID="centos"
[2025-10-13 15:08:36] ID_LIKE="rhel fedora"
[2025-10-13 15:08:36] VERSION_ID="7"
[2025-10-13 15:08:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:08:36] ANSI_COLOR="0;31"
[2025-10-13 15:08:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:08:36] HOME_URL="https://www.centos.org/"
[2025-10-13 15:08:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:08:36] 
[2025-10-13 15:08:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:08:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:08:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:08:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:08:36] 
[2025-10-13 15:08:36] 2025-10-13 19:08:04,843 | INFO     | ***************************************
[2025-10-13 15:08:36] 2025-10-13 19:08:05,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 15:08:36] 2025-10-13 19:08:05,358 | INFO     | sufficient remaining disk space (29489102848 B)
[2025-10-13 15:08:36] 2025-10-13 19:08:05,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:08:36] 2025-10-13 19:08:05,359 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:08:36] 2025-10-13 19:08:05,359 | INFO     | update_server=False
[2025-10-13 15:08:36] 2025-10-13 19:08:05,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:08:36] 2025-10-13 19:08:05,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:08:36] 2025-10-13 19:08:05,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:08:36] 2025-10-13 19:08:05,544 | INFO     | all data control threads have been joined
[2025-10-13 15:08:36] 2025-10-13 19:08:05,774 | INFO     | all payload control threads have been joined
[2025-10-13 15:08:36] 2025-10-13 19:08:05,905 | INFO     | all job control threads have been joined
[2025-10-13 15:08:36] 2025-10-13 19:08:06,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:08:36] 2025-10-13 19:08:06,127 | INFO     | aborting loop
[2025-10-13 15:08:36] 2025-10-13 19:08:06,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:08:36] 2025-10-13 19:08:06,364 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:06,365 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:06,549 | INFO     | [data] control thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:06,779 | INFO     | [payload] control thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:06,814 | INFO     | [job] validate thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:06,908 | INFO     | [job] control thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,103 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,129 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,135 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,258 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,288 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,689 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:07,850 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:08,246 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:09,365 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:15,516 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:08:36] 2025-10-13 19:08:16,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:08:36] 2025-10-13 19:08:19,645 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:08:36] 2025-10-13 19:08:21,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139720514914112)>', '<ExcThread(monitor, started 139719111341824)>']
[2025-10-13 15:08:36] 2025-10-13 19:08:26,401 | INFO     | all workflow threads have been joined
[2025-10-13 15:08:36] 2025-10-13 19:08:26,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:08:36] 2025-10-13 19:08:26,401 | INFO     | traces error code: 0
[2025-10-13 15:08:36] 2025-10-13 19:08:26,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:08:36] 2025-10-13 19:08:36,344 | INFO     | PID=2180 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 15:08:36] 2025-10-13 19:08:36,345 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:08:36] 2025-10-13 19:08:36,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:08:36] 2025-10-13 19:08:36,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:08:36] 2025-10-13 19:08:36,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:08:36] 2025-10-13 19:08:36,345 | INFO     | [monitor] control thread has ended
[2025-10-13 15:08:36] 2025-10-13 19:08:36,442 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:08:36] 2025-10-13 19:08:36,445 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:08:36] 2025-10-13 19:08:36,449 [wrapper] pilotpid: 2180
[2025-10-13 15:08:36] 2025-10-13 19:08:36,453 [wrapper] Pilot exit status: 0
[2025-10-13 15:08:36] 2025-10-13 19:08:36,470 [wrapper] pandaids: 6831734193
[2025-10-13 15:08:36] 2025-10-13 19:08:36,510 [wrapper] cleanup supervisor_pilot 20578 2181
[2025-10-13 15:08:36] 2025-10-13 19:08:36,514 [wrapper] Test setup, not cleaning
[2025-10-13 15:08:36] 2025-10-13 19:08:36,519 [wrapper] apfmon messages muted
[2025-10-13 15:08:36] 2025-10-13 19:08:36,522 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:08:36] 2025-10-13 19:08:36,526 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:08:36]  *** Error codes and diagnostics ***
[2025-10-13 15:08:36]     "exeErrorCode": 0,
[2025-10-13 15:08:36]     "exeErrorDiag": "",
[2025-10-13 15:08:36]     "pilotErrorCode": 0,
[2025-10-13 15:08:36]     "pilotErrorDiag": "",
[2025-10-13 15:08:36]  *** Listing of results directory ***
[2025-10-13 15:08:36] total 393284
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 10:29 pilot3.tar.gz
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 10:31 queuedata.json
[2025-10-13 15:08:36] -rwx------ 1 boincer umatlas     36292 Oct  5 10:32 runpilot2-wrapper.sh
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas       100 Oct 13 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:08:36] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 13:30 run_atlas
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas       105 Oct 13 13:30 job.xml
[2025-10-13 15:08:36] -rw-r--r-- 2 boincer umatlas 214670716 Oct 13 13:30 EVNT.46376901._003199.pool.root.1
[2025-10-13 15:08:36] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 13:30 start_atlas.sh
[2025-10-13 15:08:36] drwxrwx--x 2 boincer umatlas      4096 Oct 13 13:30 shared
[2025-10-13 15:08:36] -rw-r--r-- 2 boincer umatlas    565605 Oct 13 13:30 input.tar.gz
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas         0 Oct 13 13:30 boinc_lockfile
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas      2519 Oct 13 13:30 pandaJob.out
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas    972791 Oct 13 13:31 agis_schedconf.cvmfs.json
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas   1560580 Oct 13 13:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:08:36] drwx------ 4 boincer umatlas      4096 Oct 13 13:31 pilot3
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas      5950 Oct 13 15:01 init_data.xml
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas 181837239 Oct 13 15:07 HITS.46376905._087082.pool.root.1
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas       529 Oct 13 15:07 boinc_task_state.xml
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas      1047 Oct 13 15:07 memory_monitor_summary.json
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas    335635 Oct 13 15:07 log.46376905._087082.job.log.tgz.1
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas        95 Oct 13 15:07 pilot_heartbeat.json
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas      7853 Oct 13 15:08 heartbeat.json
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 15:08 boinc_mmap_file
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas        27 Oct 13 15:08 wrapper_checkpoint.txt
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas       744 Oct 13 15:08 pilotlog.txt
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas    832884 Oct 13 15:08 log.46376905._087082.job.log.1
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas       357 Oct 13 15:08 output.list
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas       620 Oct 13 15:08 runtime_log
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas   1187840 Oct 13 15:08 result.tar.gz
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 15:08 runtime_log.err
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas       659 Oct 13 15:08 QedMDmpxeP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjhPNDmjY6ESm.diag
[2025-10-13 15:08:36] -rw-r--r-- 1 boincer umatlas     22082 Oct 13 15:08 stderr.txt
[2025-10-13 15:08:36] HITS file was successfully produced:
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas 181837239 Oct 13 15:07 shared/HITS.pool.root.1
[2025-10-13 15:08:36]  *** Contents of shared directory: ***
[2025-10-13 15:08:36] total 388952
[2025-10-13 15:08:36] -rw-r--r-- 2 boincer umatlas 214670716 Oct 13 13:30 ATLAS.root_0
[2025-10-13 15:08:36] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 13:30 start_atlas.sh
[2025-10-13 15:08:36] -rw-r--r-- 2 boincer umatlas    565605 Oct 13 13:30 input.tar.gz
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas 181837239 Oct 13 15:07 HITS.pool.root.1
[2025-10-13 15:08:36] -rw------- 1 boincer umatlas   1187840 Oct 13 15:08 result.tar.gz
15:08:38 (30832): run_atlas exited; CPU time 42315.103053
15:08:38 (30832): called boinc_finish(0)

</stderr_txt>
]]>

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