Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:26:47 (609757): wrapper (7.7.26015): starting
12:26:47 (609757): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 12:26:47] Arguments: --nthreads 8
[2025-10-13 12:26:47] Threads: 8
[2025-10-13 12:26:47] Checking for CVMFS
[2025-10-13 12:26:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:26:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:26:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:26:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:26:47] 2.13.2.0 5242 7332 136456 151667 1 273 32115244 40960000 14877 16776704 0 27076569 99.751 15831341 32999 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 12:26:47] CVMFS is ok
[2025-10-13 12:26:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:26:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:26:47] Further information can be found at the LHC@home message board.
[2025-10-13 12:26:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:26:47] Checking for apptainer binary...
[2025-10-13 12:26:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:26:47] Running /usr/bin/apptainer --version
[2025-10-13 12:26:47] apptainer version 1.4.3-1.el9
[2025-10-13 12:26:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:26:47] c-212-1.aglt2.org
[2025-10-13 12:26:47] apptainer works
[2025-10-13 12:26:47] Set ATHENA_PROC_NUMBER=8
[2025-10-13 12:26:47] Set ATHENA_CORE_NUMBER=8
[2025-10-13 12:26:48] Starting ATLAS job with PandaID=6830717668
[2025-10-13 12:26:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:30:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:30:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/e8/log.46376905._073082.job.log.tgz.1
[2025-10-13 13:30:12]  workdir=None
[2025-10-13 13:30:12] ]
[2025-10-13 13:30:12] 2025-10-13 17:28:58,305 | INFO     | time since job start (3719s) is within the limit (172800.0s)
[2025-10-13 13:30:12] 2025-10-13 17:28:58,331 | INFO     | transferring file log.46376905._073082.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6830717668/log.46376905._073082.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 13:30:12] 2025-10-13 17:28:58,332 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6830717668/log.46376905._073082.job.log.tgz.1 /tmp/boinchome/slots/2/log.46376905._073082.job
[2025-10-13 13:30:12] 2025-10-13 17:28:58,363 | INFO     | adding to output.list: log.46376905._073082.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/e8/log.46376905._073082.job.log.tg
[2025-10-13 13:30:12] 2025-10-13 17:28:58,364 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 13:30:12] 2025-10-13 17:28:58,364 | INFO     | summary of transferred files:
[2025-10-13 13:30:12] 2025-10-13 17:28:58,365 | INFO     |  -- lfn=log.46376905._073082.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 13:30:12] 2025-10-13 17:28:58,365 | INFO     | stage-out finished correctly
[2025-10-13 13:30:12] 2025-10-13 17:28:59,071 | INFO     | monitor loop #274: job 0:6830717668 is in state 'finished'
[2025-10-13 13:30:12] 2025-10-13 17:28:59,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:30:12] 2025-10-13 17:29:00,322 | INFO     | time since job start (3721s) is within the limit (172800.0s)
[2025-10-13 13:30:12] 2025-10-13 17:29:01,577 | INFO     | monitor loop #275: job 0:6830717668 is in state 'finished'
[2025-10-13 13:30:12] 2025-10-13 17:29:01,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:30:12] 2025-10-13 17:29:01,743 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 13:30:12] 2025-10-13 17:29:02,328 | INFO     | time since job start (3723s) is within the limit (172800.0s)
[2025-10-13 13:30:12] 2025-10-13 17:29:03,500 | INFO     | job 6830717668 has state=finished
[2025-10-13 13:30:12] 2025-10-13 17:29:03,502 | INFO     | preparing for final server update for job 6830717668 in state='finished'
[2025-10-13 13:30:12] 2025-10-13 17:29:03,502 | INFO     | this job has now completed (state=finished)
[2025-10-13 13:30:12] 2025-10-13 17:29:03,503 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 13:30:12] 2025-10-13 17:29:03,504 | INFO     | log transfer has been attempted: DONE
[2025-10-13 13:30:12] 2025-10-13 17:29:03,504 | INFO     | job 6830717668 has finished - writing final server update
[2025-10-13 13:30:12] 2025-10-13 17:29:03,504 | INFO     | total number of processed events: 400 (read)
[2025-10-13 13:30:12] 2025-10-13 17:29:03,506 | INFO     | executing command: lscpu
[2025-10-13 13:30:12] 2025-10-13 17:29:03,580 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 13:30:12] 2025-10-13 17:29:03,827 | INFO     | PID=613442 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 13:30:12] 2025-10-13 17:29:03,827 | INFO     | .. there are 17 such processes running
[2025-10-13 13:30:12] 2025-10-13 17:29:04,082 | INFO     | monitor loop #276: job 0:6830717668 is in state 'finished'
[2025-10-13 13:30:12] 2025-10-13 17:29:04,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:30:12] 2025-10-13 17:29:04,828 | INFO     | time since job start (3725s) is within the limit (172800.0s)
[2025-10-13 13:30:12] 2025-10-13 17:29:06,584 | INFO     | monitor loop #277: job 0:6830717668 is in state 'finished'
[2025-10-13 13:30:12] 2025-10-13 17:29:06,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:30:12] 2025-10-13 17:29:06,833 | INFO     | time since job start (3727s) is within the limit (172800.0s)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,437 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 13:30:12] 2025-10-13 17:29:08,443 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3271.4741666666673
[2025-10-13 13:30:12] 2025-10-13 17:29:08,458 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6830717668/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,459 | INFO     | extracted standard info from prmon json
[2025-10-13 13:30:12] 2025-10-13 17:29:08,459 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:30:12] 2025-10-13 17:29:08,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:30:12] 2025-10-13 17:29:08,460 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:30:12] 2025-10-13 17:29:08,460 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:30:12] 2025-10-13 17:29:08,461 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:30:12] 2025-10-13 17:29:08,462 | INFO     | sum of square deviations: 48810217.5
[2025-10-13 13:30:12] 2025-10-13 17:29:08,463 | INFO     | sum of deviations: -4832155351.5
[2025-10-13 13:30:12] 2025-10-13 17:29:08,463 | INFO     | mean x: 1760374768.5
[2025-10-13 13:30:12] 2025-10-13 17:29:08,463 | INFO     | mean y: 2868464.8703703703
[2025-10-13 13:30:12] 2025-10-13 17:29:08,463 | INFO     | -- intersect: 174277944339.15527
[2025-10-13 13:30:12] 2025-10-13 17:29:08,463 | INFO     | intersect: 174277944339.15527
[2025-10-13 13:30:12] 2025-10-13 17:29:08,463 | INFO     | chi2: 0.11790118507344552
[2025-10-13 13:30:12] 2025-10-13 17:29:08,464 | INFO     | -- intersect: 174277944339.15527
[2025-10-13 13:30:12] 2025-10-13 17:29:08,464 | INFO     | current memory leak: -99.00 B/s (using 54 data points, chi2=0.12)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,465 | INFO     | could have reported an average CPU frequency of 3055 MHz (6 samples)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,465 | INFO     | ..............................
[2025-10-13 13:30:12] 2025-10-13 17:29:08,465 | INFO     | . Timing measurements:
[2025-10-13 13:30:12] 2025-10-13 17:29:08,465 | INFO     | . get job = 0 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | . initial setup = 2 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | . payload setup = 6 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | . stage-in = 0 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | . payload execution = 3690 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | . stage-out = 0 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | . log creation = 0 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,466 | INFO     | ..............................
[2025-10-13 13:30:12] 2025-10-13 17:29:08,565 | INFO     | 
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | job summary report
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | --------------------------------------------------
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | PanDA job id: 6830717668
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | task id: 46376905
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | errors: (none)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | pilot state: finished 
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | transexitcode: 0
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | exeerrorcode: 0
[2025-10-13 13:30:12] 2025-10-13 17:29:08,566 | INFO     | exeerrordiag: 
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | exitcode: 0
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | exitmsg: OK
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | cpuconsumptiontime: 27181 s
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | nevents: 400
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | neventsw: 0
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | pid: 621537
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | pgrp: 621537
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | corecount: 8
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | event service: False
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 3701: 2374923, 3703: 2383949, 3707: 2384005, 3713: 2384327}
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | --------------------------------------------------
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | 
[2025-10-13 13:30:12] 2025-10-13 17:29:08,567 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 13:30:12] 2025-10-13 17:29:08,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:30:12] 2025-10-13 17:29:08,597 | INFO     | job 6830717668 has completed (purged errors)
[2025-10-13 13:30:12] 2025-10-13 17:29:08,598 | INFO     | overall cleanup function is called
[2025-10-13 13:30:12] 2025-10-13 17:29:09,606 | INFO     | --- collectZombieJob: --- 10, [621537]
[2025-10-13 13:30:12] 2025-10-13 17:29:09,606 | INFO     | zombie collector waiting for pid 621537
[2025-10-13 13:30:12] 2025-10-13 17:29:09,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:30:12] 2025-10-13 17:29:09,606 | INFO     | collected zombie processes
[2025-10-13 13:30:12] 2025-10-13 17:29:09,606 | INFO     | will attempt to kill all subprocesses of pid=621537
[2025-10-13 13:30:12] 2025-10-13 17:29:10,034 | INFO     | process IDs to be killed: [621537] (in reverse order)
[2025-10-13 13:30:12] 2025-10-13 17:29:10,179 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:30:12] 2025-10-13 17:29:10,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:30:12] 2025-10-13 17:29:10,198 | INFO     | did not find any defunct processes belonging to 621537
[2025-10-13 13:30:12] 2025-10-13 17:29:10,217 | INFO     | did not find any defunct processes belonging to 621537
[2025-10-13 13:30:12] 2025-10-13 17:29:10,217 | INFO     | ready for new job
[2025-10-13 13:30:12] 2025-10-13 17:29:10,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:30:12] 2025-10-13 17:29:10,219 | INFO     | ***************************************
[2025-10-13 13:30:12] 2025-10-13 17:29:10,219 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 13:30:12] 2025-10-13 17:29:10,219 | INFO     | ***************************************
[2025-10-13 13:30:12] 2025-10-13 17:29:10,219 | INFO     | 
[2025-10-13 13:30:12] 2025-10-13 17:29:10,225 | INFO     | architecture information:
[2025-10-13 13:30:12] 2025-10-13 17:29:10,225 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:30:12] 2025-10-13 17:29:10,260 | INFO     | cat /etc/os-release:
[2025-10-13 13:30:12] NAME="CentOS Linux"
[2025-10-13 13:30:12] VERSION="7 (Core)"
[2025-10-13 13:30:12] ID="centos"
[2025-10-13 13:30:12] ID_LIKE="rhel fedora"
[2025-10-13 13:30:12] VERSION_ID="7"
[2025-10-13 13:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:30:12] ANSI_COLOR="0;31"
[2025-10-13 13:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:30:12] HOME_URL="https://www.centos.org/"
[2025-10-13 13:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:30:12] 
[2025-10-13 13:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:30:12] 
[2025-10-13 13:30:12] 2025-10-13 17:29:10,261 | INFO     | ***************************************
[2025-10-13 13:30:12] 2025-10-13 17:29:10,764 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 13:30:12] 2025-10-13 17:29:10,797 | INFO     | sufficient remaining disk space (129868234752 B)
[2025-10-13 13:30:12] 2025-10-13 17:29:10,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:30:12] 2025-10-13 17:29:10,798 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:30:12] 2025-10-13 17:29:10,798 | INFO     | update_server=False
[2025-10-13 13:30:12] 2025-10-13 17:29:10,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:30:12] 2025-10-13 17:29:10,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:30:12] 2025-10-13 17:29:10,799 | INFO     | aborting loop
[2025-10-13 13:30:12] 2025-10-13 17:29:11,307 | INFO     | all payload control threads have been joined
[2025-10-13 13:30:12] 2025-10-13 17:29:11,416 | INFO     | all job control threads have been joined
[2025-10-13 13:30:12] 2025-10-13 17:29:11,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:30:12] 2025-10-13 17:29:11,513 | INFO     | all data control threads have been joined
[2025-10-13 13:30:12] 2025-10-13 17:29:11,804 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:11,804 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,071 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,072 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,072 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,312 | INFO     | [payload] control thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:30:12] 2025-10-13 17:29:12,422 | INFO     | [job] control thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,442 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,468 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:12,514 | INFO     | [data] control thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:13,184 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:13,283 | INFO     | [job] validate thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:13,474 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:13,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:30:12] 2025-10-13 17:29:14,581 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:16,339 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:21,160 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:30:12] 2025-10-13 17:29:22,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:30:12] 2025-10-13 17:29:40,433 | INFO     | PID=613442 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 13:30:12] 2025-10-13 17:29:40,433 | INFO     | .. there are 17 such processes running
[2025-10-13 13:30:12] 2025-10-13 17:29:40,434 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:30:12] 2025-10-13 17:29:40,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:30:12] 2025-10-13 17:29:40,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:30:12] 2025-10-13 17:30:05,034 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:30:12] 2025-10-13 17:30:06,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503838254912)>', '<ExcThread(monitor, started 140503202916096)>']
[2025-10-13 13:30:12] 2025-10-13 17:30:07,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:30:12] 2025-10-13 17:30:07,569 | INFO     | [monitor] control thread has ended
[2025-10-13 13:30:12] 2025-10-13 17:30:11,643 | INFO     | all workflow threads have been joined
[2025-10-13 13:30:12] 2025-10-13 17:30:11,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:30:12] 2025-10-13 17:30:11,643 | INFO     | traces error code: 0
[2025-10-13 13:30:12] 2025-10-13 17:30:11,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:30:12] 2025-10-13 17:30:11,931 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:30:12] 2025-10-13 17:30:11,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:30:12] 2025-10-13 17:30:11,939 [wrapper] pilotpid: 613442
[2025-10-13 13:30:12] 2025-10-13 17:30:11,943 [wrapper] Pilot exit status: 0
[2025-10-13 13:30:12] 2025-10-13 17:30:11,955 [wrapper] pandaids: 6830717668
[2025-10-13 13:30:12] 2025-10-13 17:30:12,052 [wrapper] cleanup supervisor_pilot  962835 613443
[2025-10-13 13:30:12] 2025-10-13 17:30:12,056 [wrapper] Test setup, not cleaning
[2025-10-13 13:30:12] 2025-10-13 17:30:12,059 [wrapper] apfmon messages muted
[2025-10-13 13:30:12] 2025-10-13 17:30:12,063 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:30:12] 2025-10-13 17:30:12,066 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:30:12]  *** Error codes and diagnostics ***
[2025-10-13 13:30:12]     "exeErrorCode": 0,
[2025-10-13 13:30:12]     "exeErrorDiag": "",
[2025-10-13 13:30:12]     "pilotErrorCode": 0,
[2025-10-13 13:30:12]     "pilotErrorDiag": "",
[2025-10-13 13:30:12]  *** Listing of results directory ***
[2025-10-13 13:30:12] total 387268
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas    552446 Oct  4 21:58 pilot3.tar.gz
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas      5112 Oct  4 22:04 queuedata.json
[2025-10-13 13:30:12] -rwx------. 1 boincer umatlas     36292 Oct  4 22:04 runpilot2-wrapper.sh
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas       100 Oct 13 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:30:12] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 12:26 run_atlas
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas       105 Oct 13 12:26 job.xml
[2025-10-13 13:30:12] -rw-r--r--. 2 boincer umatlas 213868317 Oct 13 12:26 EVNT.46376901._002662.pool.root.1
[2025-10-13 13:30:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 12:26 start_atlas.sh
[2025-10-13 13:30:12] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 12:26 shared
[2025-10-13 13:30:12] -rw-r--r--. 2 boincer umatlas    565604 Oct 13 12:26 input.tar.gz
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas         0 Oct 13 12:26 boinc_lockfile
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas      2519 Oct 13 12:26 pandaJob.out
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas    972783 Oct 13 12:26 agis_schedconf.cvmfs.json
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas   1560580 Oct 13 12:26 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:30:12] drwx------. 4 boincer umatlas      4096 Oct 13 12:26 pilot3
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas      6945 Oct 13 13:28 init_data.xml
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas       529 Oct 13 13:28 boinc_task_state.xml
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas 177061864 Oct 13 13:28 HITS.46376905._073082.pool.root.1
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas      1047 Oct 13 13:28 memory_monitor_summary.json
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas    312679 Oct 13 13:28 log.46376905._073082.job.log.tgz.1
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas      7796 Oct 13 13:29 heartbeat.json
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas        95 Oct 13 13:29 pilot_heartbeat.json
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 13:30 boinc_mmap_file
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas        27 Oct 13 13:30 wrapper_checkpoint.txt
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas      4896 Oct 13 13:30 pilotlog.txt
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas    558784 Oct 13 13:30 log.46376905._073082.job.log.1
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas       357 Oct 13 13:30 output.list
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas       620 Oct 13 13:30 runtime_log
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas    890880 Oct 13 13:30 result.tar.gz
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 13:30 runtime_log.err
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas       654 Oct 13 13:30 99pMDmGITP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUUNNDm5FPdWn.diag
[2025-10-13 13:30:12] -rw-r--r--. 1 boincer umatlas     22331 Oct 13 13:30 stderr.txt
[2025-10-13 13:30:12] HITS file was successfully produced:
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas 177061864 Oct 13 13:28 shared/HITS.pool.root.1
[2025-10-13 13:30:12]  *** Contents of shared directory: ***
[2025-10-13 13:30:12] total 383220
[2025-10-13 13:30:12] -rw-r--r--. 2 boincer umatlas 213868317 Oct 13 12:26 ATLAS.root_0
[2025-10-13 13:30:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 12:26 start_atlas.sh
[2025-10-13 13:30:12] -rw-r--r--. 2 boincer umatlas    565604 Oct 13 12:26 input.tar.gz
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas 177061864 Oct 13 13:28 HITS.pool.root.1
[2025-10-13 13:30:12] -rw-------. 1 boincer umatlas    890880 Oct 13 13:30 result.tar.gz
13:30:13 (609757): run_atlas exited; CPU time 27239.745749
13:30:13 (609757): called boinc_finish(0)

</stderr_txt>
]]>

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