Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:10:32 (21321): wrapper (7.7.26015): starting
12:10:32 (21321): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 12:10:32] Arguments: --nthreads 8
[2025-10-13 12:10:32] Threads: 8
[2025-10-13 12:10:32] Checking for CVMFS
[2025-10-13 12:10:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:10:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:10:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:10:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:10:32] 2.11.2.0 24877 54545 126340 151666 0 57 14530889 18432000 1009 130560 0 50988707 99.977 2321514 37552 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 12:10:32] CVMFS is ok
[2025-10-13 12:10:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:10:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:10:32] Further information can be found at the LHC@home message board.
[2025-10-13 12:10:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:10:32] Checking for apptainer binary...
[2025-10-13 12:10:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:10:32] Running /usr/bin/apptainer --version
[2025-10-13 12:10:32] apptainer version 1.3.2-1.el7
[2025-10-13 12:10:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:10:33] c-206-3.aglt2.org
[2025-10-13 12:10:33] apptainer works
[2025-10-13 12:10:33] Set ATHENA_PROC_NUMBER=8
[2025-10-13 12:10:33] Set ATHENA_CORE_NUMBER=8
[2025-10-13 12:10:33] Starting ATLAS job with PandaID=6843085137
[2025-10-13 12:10:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:51:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:51:02]  scope=mc23_13p6TeV
[2025-10-13 13:51:02]  status=None
[2025-10-13 13:51:02]  status_code=0
[2025-10-13 13:51:02]  storage_token=
[2025-10-13 13:51:02]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6843085137/log.46676269._096886.job.log.tgz.1
[2025-10-13 13:51:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/96/log.46676269._096886.job.log.tgz.1
[2025-10-13 13:51:02]  workdir=None
[2025-10-13 13:51:02] ]
[2025-10-13 13:51:02] 2025-10-13 17:50:22,676 | INFO     | transferring file log.46676269._096886.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6843085137/log.46676269._096886.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 13:51:02] 2025-10-13 17:50:22,677 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6843085137/log.46676269._096886.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._096886.job
[2025-10-13 13:51:02] 2025-10-13 17:50:22,697 | INFO     | adding to output.list: log.46676269._096886.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/96/log.46676269._096886.job.log.tg
[2025-10-13 13:51:02] 2025-10-13 17:50:22,698 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 13:51:02] 2025-10-13 17:50:22,698 | INFO     | summary of transferred files:
[2025-10-13 13:51:02] 2025-10-13 17:50:22,699 | INFO     |  -- lfn=log.46676269._096886.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 13:51:02] 2025-10-13 17:50:22,699 | INFO     | stage-out finished correctly
[2025-10-13 13:51:02] 2025-10-13 17:50:24,487 | INFO     | time since job start (5981s) is within the limit (172800.0s)
[2025-10-13 13:51:02] 2025-10-13 17:50:25,617 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 13:51:02] 2025-10-13 17:50:25,726 | INFO     | job 6843085137 has state=finished
[2025-10-13 13:51:02] 2025-10-13 17:50:25,726 | INFO     | preparing for final server update for job 6843085137 in state='finished'
[2025-10-13 13:51:02] 2025-10-13 17:50:25,727 | INFO     | this job has now completed (state=finished)
[2025-10-13 13:51:02] 2025-10-13 17:50:25,727 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 13:51:02] 2025-10-13 17:50:25,727 | INFO     | log transfer has been attempted: DONE
[2025-10-13 13:51:02] 2025-10-13 17:50:25,727 | INFO     | job 6843085137 has finished - writing final server update
[2025-10-13 13:51:02] 2025-10-13 17:50:25,728 | INFO     | total number of processed events: 400 (read)
[2025-10-13 13:51:02] 2025-10-13 17:50:25,729 | INFO     | executing command: lscpu
[2025-10-13 13:51:02] 2025-10-13 17:50:25,759 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 13:51:02] 2025-10-13 17:50:26,493 | INFO     | time since job start (5983s) is within the limit (172800.0s)
[2025-10-13 13:51:02] 2025-10-13 17:50:27,439 | WARNING  | process 31444 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 13:51:02] 2025-10-13 17:50:27,439 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6843085137/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:51:02] 2025-10-13 17:50:27,535 | INFO     | number of running child processes to parent process 31444: 1
[2025-10-13 13:51:02] 2025-10-13 17:50:27,536 | INFO     | maximum number of monitored processes: 6
[2025-10-13 13:51:02] 2025-10-13 17:50:28,498 | INFO     | time since job start (5985s) is within the limit (172800.0s)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,039 | INFO     | monitor loop #456: job 0:6843085137 is in state 'finished'
[2025-10-13 13:51:02] 2025-10-13 17:50:30,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,169 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 13:51:02] 2025-10-13 17:50:30,172 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1712.4583333333333
[2025-10-13 13:51:02] 2025-10-13 17:50:30,175 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6843085137/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,176 | INFO     | extracted standard info from prmon json
[2025-10-13 13:51:02] 2025-10-13 17:50:30,176 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:51:02] 2025-10-13 17:50:30,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:51:02] 2025-10-13 17:50:30,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:51:02] 2025-10-13 17:50:30,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:51:02] 2025-10-13 17:50:30,178 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:51:02] 2025-10-13 17:50:30,178 | INFO     | sum of square deviations: 233641590.0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,179 | INFO     | sum of deviations: 341172634.0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,179 | INFO     | mean x: 1760374916.0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,179 | INFO     | mean y: 2514421.8021978023
[2025-10-13 13:51:02] 2025-10-13 17:50:30,179 | INFO     | -- intersect: -2568054229.6063495
[2025-10-13 13:51:02] 2025-10-13 17:50:30,179 | INFO     | intersect: -2568054229.6063495
[2025-10-13 13:51:02] 2025-10-13 17:50:30,179 | INFO     | chi2: 0.03437245131729019
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | -- intersect: -2568054229.6063495
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | current memory leak: 1.46 B/s (using 91 data points, chi2=0.03)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | could have reported an average CPU frequency of 1989 MHz (7 samples)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | ..............................
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | . Timing measurements:
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | . get job = 0 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | . initial setup = 2 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,180 | INFO     | . payload setup = 4 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,181 | INFO     | . stage-in = 0 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,181 | INFO     | . payload execution = 5956 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,181 | INFO     | . stage-out = 0 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,181 | INFO     | . log creation = 0 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,181 | INFO     | ..............................
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | 
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | job summary report
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | --------------------------------------------------
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | PanDA job id: 6843085137
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | task id: 46676269
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | errors: (none)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,267 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | pilot state: finished 
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | transexitcode: 0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | exeerrorcode: 0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | exeerrordiag: 
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | exitcode: 0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | exitmsg: OK
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | cpuconsumptiontime: 44583 s
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | nevents: 400
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | neventsw: 0
[2025-10-13 13:51:02] 2025-10-13 17:50:30,268 | INFO     | pid: 31444
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | pgrp: 31444
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | corecount: 8
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | event service: False
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | sizes: {0: 2348806, 1: 2348806, 4: 2349096, 11: 2349124, 5964: 2376057, 5965: 2385055, 5968: 2385239, 5972: 2385433}
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | --------------------------------------------------
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | 
[2025-10-13 13:51:02] 2025-10-13 17:50:30,269 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 13:51:02] 2025-10-13 17:50:30,291 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,291 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,291 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,292 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,292 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,292 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,292 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,293 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,293 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,293 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,294 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,294 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,294 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:51:02] 2025-10-13 17:50:30,295 | INFO     | job 6843085137 has completed (purged errors)
[2025-10-13 13:51:02] 2025-10-13 17:50:30,295 | INFO     | overall cleanup function is called
[2025-10-13 13:51:02] 2025-10-13 17:50:31,303 | INFO     | --- collectZombieJob: --- 10, [31444]
[2025-10-13 13:51:02] 2025-10-13 17:50:31,303 | INFO     | zombie collector waiting for pid 31444
[2025-10-13 13:51:02] 2025-10-13 17:50:31,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:51:02] 2025-10-13 17:50:31,303 | INFO     | collected zombie processes
[2025-10-13 13:51:02] 2025-10-13 17:50:31,304 | INFO     | will attempt to kill all subprocesses of pid=31444
[2025-10-13 13:51:02] 2025-10-13 17:50:31,400 | INFO     | process IDs to be killed: [31444] (in reverse order)
[2025-10-13 13:51:02] 2025-10-13 17:50:31,523 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:51:02] 2025-10-13 17:50:31,524 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:51:02] 2025-10-13 17:50:31,526 | INFO     | did not find any defunct processes belonging to 31444
[2025-10-13 13:51:02] 2025-10-13 17:50:31,528 | INFO     | did not find any defunct processes belonging to 31444
[2025-10-13 13:51:02] 2025-10-13 17:50:31,529 | INFO     | ready for new job
[2025-10-13 13:51:02] 2025-10-13 17:50:31,529 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:51:02] 2025-10-13 17:50:31,530 | INFO     | ***************************************
[2025-10-13 13:51:02] 2025-10-13 17:50:31,530 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:51:02] 2025-10-13 17:50:31,530 | INFO     | ***************************************
[2025-10-13 13:51:02] 2025-10-13 17:50:31,530 | INFO     | 
[2025-10-13 13:51:02] 2025-10-13 17:50:31,531 | INFO     | architecture information:
[2025-10-13 13:51:02] 2025-10-13 17:50:31,531 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:51:02] 2025-10-13 17:50:31,545 | INFO     | cat /etc/os-release:
[2025-10-13 13:51:02] NAME="CentOS Linux"
[2025-10-13 13:51:02] VERSION="7 (Core)"
[2025-10-13 13:51:02] ID="centos"
[2025-10-13 13:51:02] ID_LIKE="rhel fedora"
[2025-10-13 13:51:02] VERSION_ID="7"
[2025-10-13 13:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:51:02] ANSI_COLOR="0;31"
[2025-10-13 13:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:51:02] HOME_URL="https://www.centos.org/"
[2025-10-13 13:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:51:02] 
[2025-10-13 13:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:51:02] 
[2025-10-13 13:51:02] 2025-10-13 17:50:31,546 | INFO     | ***************************************
[2025-10-13 13:51:02] 2025-10-13 17:50:32,048 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 13:51:02] 2025-10-13 17:50:32,066 | INFO     | sufficient remaining disk space (29371662336 B)
[2025-10-13 13:51:02] 2025-10-13 17:50:32,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:51:02] 2025-10-13 17:50:32,067 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:51:02] 2025-10-13 17:50:32,067 | INFO     | update_server=False
[2025-10-13 13:51:02] 2025-10-13 17:50:32,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:51:02] 2025-10-13 17:50:32,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:51:02] 2025-10-13 17:50:32,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:51:02] 2025-10-13 17:50:32,540 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 13:51:02] 2025-10-13 17:50:32,540 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 13:51:02] 2025-10-13 17:50:32,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:51:02] 2025-10-13 17:50:32,541 | INFO     | will abort loop
[2025-10-13 13:51:02] 2025-10-13 17:50:32,576 | INFO     | all data control threads have been joined
[2025-10-13 13:51:02] 2025-10-13 17:50:33,073 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:33,074 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:33,110 | INFO     | all job control threads have been joined
[2025-10-13 13:51:02] 2025-10-13 17:50:33,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:51:02] 2025-10-13 17:50:33,355 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:33,388 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:33,496 | INFO     | all payload control threads have been joined
[2025-10-13 13:51:02] 2025-10-13 17:50:33,543 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:33,581 | INFO     | [data] control thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:33,954 | INFO     | [job] validate thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:34,104 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:34,116 | INFO     | [job] control thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:34,181 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:34,301 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:34,387 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:34,501 | INFO     | [payload] control thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:35,302 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:36,074 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:42,422 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:51:02] 2025-10-13 17:50:43,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:51:02] 2025-10-13 17:50:51,948 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:51:02] 2025-10-13 17:50:53,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636776904512)>', '<ExcThread(monitor, started 140636338509568)>']
[2025-10-13 13:51:02] 2025-10-13 17:50:58,051 | INFO     | all workflow threads have been joined
[2025-10-13 13:51:02] 2025-10-13 17:50:58,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:51:02] 2025-10-13 17:50:58,052 | INFO     | traces error code: 0
[2025-10-13 13:51:02] 2025-10-13 17:50:58,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:51:02] 2025-10-13 17:51:01,712 | INFO     | PID=25022 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 13:51:02] 2025-10-13 17:51:01,712 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:51:02] 2025-10-13 17:51:01,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:51:02] 2025-10-13 17:51:01,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:51:02] 2025-10-13 17:51:01,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:51:02] 2025-10-13 17:51:01,713 | INFO     | [monitor] control thread has ended
[2025-10-13 13:51:02] 2025-10-13 17:51:01,807 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:51:02] 2025-10-13 17:51:01,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:51:02] 2025-10-13 17:51:01,816 [wrapper] pilotpid: 25022
[2025-10-13 13:51:02] 2025-10-13 17:51:01,820 [wrapper] Pilot exit status: 0
[2025-10-13 13:51:02] 2025-10-13 17:51:01,835 [wrapper] pandaids: 6843085137
[2025-10-13 13:51:02] 2025-10-13 17:51:01,873 [wrapper] cleanup supervisor_pilot 28839 25023
[2025-10-13 13:51:02] 2025-10-13 17:51:01,878 [wrapper] Test setup, not cleaning
[2025-10-13 13:51:02] 2025-10-13 17:51:01,882 [wrapper] apfmon messages muted
[2025-10-13 13:51:02] 2025-10-13 17:51:01,885 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:51:02] 2025-10-13 17:51:01,890 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:51:02]  *** Error codes and diagnostics ***
[2025-10-13 13:51:02]     "exeErrorCode": 0,
[2025-10-13 13:51:02]     "exeErrorDiag": "",
[2025-10-13 13:51:02]     "pilotErrorCode": 0,
[2025-10-13 13:51:02]     "pilotErrorDiag": "",
[2025-10-13 13:51:02]  *** Listing of results directory ***
[2025-10-13 13:51:02] total 401096
[2025-10-13 13:51:02] -rwx------ 1 boincer umatlas     36292 Oct 13 11:15 runpilot2-wrapper.sh
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 11:15 queuedata.json
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 11:15 pilot3.tar.gz
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas       100 Oct 13 12:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:51:02] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 12:10 run_atlas
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas       105 Oct 13 12:10 job.xml
[2025-10-13 13:51:02] -rw-r--r-- 2 boincer umatlas 219249616 Oct 13 12:10 EVNT.46676267._004018.pool.root.1
[2025-10-13 13:51:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 12:10 start_atlas.sh
[2025-10-13 13:51:02] drwxrwx--x 2 boincer umatlas      4096 Oct 13 12:10 shared
[2025-10-13 13:51:02] -rw-r--r-- 2 boincer umatlas    569677 Oct 13 12:10 input.tar.gz
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas         0 Oct 13 12:10 boinc_lockfile
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 12:10 pandaJob.out
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas    972783 Oct 13 12:10 agis_schedconf.cvmfs.json
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas   1560580 Oct 13 12:10 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:51:02] drwx------ 5 boincer umatlas      4096 Oct 13 12:10 pilot3
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas      5950 Oct 13 13:46 init_data.xml
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas 185176088 Oct 13 13:49 HITS.46676269._096886.pool.root.1
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas       530 Oct 13 13:50 boinc_task_state.xml
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas      1052 Oct 13 13:50 memory_monitor_summary.json
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas    339008 Oct 13 13:50 log.46676269._096886.job.log.tgz.1
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas        95 Oct 13 13:50 pilot_heartbeat.json
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas      7852 Oct 13 13:50 heartbeat.json
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 13:50 boinc_mmap_file
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas        27 Oct 13 13:50 wrapper_checkpoint.txt
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas       745 Oct 13 13:51 pilotlog.txt
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas    863204 Oct 13 13:51 log.46676269._096886.job.log.1
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas       357 Oct 13 13:51 output.list
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas       620 Oct 13 13:51 runtime_log
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas   1218560 Oct 13 13:51 result.tar.gz
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas      8698 Oct 13 13:51 runtime_log.err
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas       658 Oct 13 13:51 mVWNDm2RZS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmkVMDm32ADEn.diag
[2025-10-13 13:51:02] -rw-r--r-- 1 boincer umatlas     21901 Oct 13 13:51 stderr.txt
[2025-10-13 13:51:02] HITS file was successfully produced:
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas 185176088 Oct 13 13:49 shared/HITS.pool.root.1
[2025-10-13 13:51:02]  *** Contents of shared directory: ***
[2025-10-13 13:51:02] total 396724
[2025-10-13 13:51:02] -rw-r--r-- 2 boincer umatlas 219249616 Oct 13 12:10 ATLAS.root_0
[2025-10-13 13:51:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 12:10 start_atlas.sh
[2025-10-13 13:51:02] -rw-r--r-- 2 boincer umatlas    569677 Oct 13 12:10 input.tar.gz
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas 185176088 Oct 13 13:49 HITS.pool.root.1
[2025-10-13 13:51:02] -rw------- 1 boincer umatlas   1218560 Oct 13 13:51 result.tar.gz
13:51:03 (21321): run_atlas exited; CPU time 44397.999396
13:51:03 (21321): called boinc_finish(0)

</stderr_txt>
]]>

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