Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:01:12 (23799): wrapper (7.7.26015): starting
12:01:12 (23799): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 12:01:12] Arguments: --nthreads 8
[2025-10-13 12:01:12] Threads: 8
[2025-10-13 12:01:12] Checking for CVMFS
[2025-10-13 12:01:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 12:01:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 12:01:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 12:01:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 12:01:12] 2.11.2.0 8318 54602 112876 151666 0 1 10202943 18432000 1 130560 0 50142371 99.974 2571889 38889 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 12:01:12] CVMFS is ok
[2025-10-13 12:01:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:01:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:01:12] Further information can be found at the LHC@home message board.
[2025-10-13 12:01:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:01:12] Checking for apptainer binary...
[2025-10-13 12:01:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 12:01:12] Running /usr/bin/apptainer --version
[2025-10-13 12:01:13] apptainer version 1.3.2-1.el7
[2025-10-13 12:01:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:01:14] c-206-28.aglt2.org
[2025-10-13 12:01:14] apptainer works
[2025-10-13 12:01:14] Set ATHENA_PROC_NUMBER=8
[2025-10-13 12:01:14] Set ATHENA_CORE_NUMBER=8
[2025-10-13 12:01:14] Starting ATLAS job with PandaID=6841069816
[2025-10-13 12:01:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:46:43]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:46:43] 2025-10-13 17:46:00,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:46:43] 2025-10-13 17:46:00,524 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:46:43] 2025-10-13 17:46:00,526 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:46:43] 2025-10-13 17:46:00,526 | INFO     | sum of square deviations: 338804492.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,527 | INFO     | sum of deviations: 2947630165.999998
[2025-10-13 13:46:43] 2025-10-13 17:46:00,527 | INFO     | mean x: 1760374429.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,527 | INFO     | mean y: 2453404.786407767
[2025-10-13 13:46:43] 2025-10-13 17:46:00,527 | INFO     | -- intersect: -15312965643.363113
[2025-10-13 13:46:43] 2025-10-13 17:46:00,527 | INFO     | intersect: -15312965643.363113
[2025-10-13 13:46:43] 2025-10-13 17:46:00,527 | INFO     | chi2: 2.1125060342195687
[2025-10-13 13:46:43] 2025-10-13 17:46:00,528 | INFO     | sum of square deviations: 291817564.5
[2025-10-13 13:46:43] 2025-10-13 17:46:00,528 | INFO     | sum of deviations: 9321122262.999998
[2025-10-13 13:46:43] 2025-10-13 17:46:00,528 | INFO     | mean x: 1760374276.5
[2025-10-13 13:46:43] 2025-10-13 17:46:00,528 | INFO     | mean y: 2473231.3061224488
[2025-10-13 13:46:43] 2025-10-13 17:46:00,528 | INFO     | -- intersect: -56226711903.630005
[2025-10-13 13:46:43] 2025-10-13 17:46:00,528 | INFO     | intersect: -56226711903.630005
[2025-10-13 13:46:43] 2025-10-13 17:46:00,529 | INFO     | chi2: 1.3527231149402121
[2025-10-13 13:46:43] 2025-10-13 17:46:00,529 | INFO     | current chi2=1.3527231149402121 (change=35.96595261608548 %)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,529 | INFO     | sum of square deviations: 249388862.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,529 | INFO     | sum of deviations: 8821269048.000006
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | mean x: 1760374124.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | mean y: 2471433.193548387
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | -- intersect: -62264678945.56444
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | intersect: -62264678945.56444
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | chi2: 1.356150305870832
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | current chi2=1.356150305870832 (change=-0.2533549469782886 %)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,530 | INFO     | right removable region: 92
[2025-10-13 13:46:43] 2025-10-13 17:46:00,531 | INFO     | sum of square deviations: 291817564.5
[2025-10-13 13:46:43] 2025-10-13 17:46:00,531 | INFO     | sum of deviations: -10064014606.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,531 | INFO     | mean x: 1760374581.5
[2025-10-13 13:46:43] 2025-10-13 17:46:00,531 | INFO     | mean y: 2494529.2040816327
[2025-10-13 13:46:43] 2025-10-13 17:46:00,531 | INFO     | -- intersect: 60713149594.13297
[2025-10-13 13:46:43] 2025-10-13 17:46:00,531 | INFO     | intersect: 60713149594.13297
[2025-10-13 13:46:43] 2025-10-13 17:46:00,532 | INFO     | chi2: 0.8515188985365878
[2025-10-13 13:46:43] 2025-10-13 17:46:00,532 | INFO     | current chi2=0.8515188985365878 (change=59.69152822556705 %)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,532 | INFO     | sum of square deviations: 249388862.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,532 | INFO     | sum of deviations: -6522328376.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | mean x: 1760374734.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | mean y: 2481751.0215053763
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | -- intersect: 46041996057.6454
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | intersect: 46041996057.6454
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | chi2: 0.8236535536348057
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | current chi2=0.8236535536348057 (change=3.2724282396634026 %)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | left removable region: 20
[2025-10-13 13:46:43] 2025-10-13 17:46:00,533 | INFO     | sum of square deviations: 115715658.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,534 | INFO     | sum of deviations: 514504622.0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,534 | INFO     | mean x: 1760374703.5
[2025-10-13 13:46:43] 2025-10-13 17:46:00,534 | INFO     | mean y: 2501222.0555555555
[2025-10-13 13:46:43] 2025-10-13 17:46:00,534 | INFO     | -- intersect: -7824623793.321617
[2025-10-13 13:46:43] 2025-10-13 17:46:00,534 | INFO     | intersect: -7824623793.321617
[2025-10-13 13:46:43] 2025-10-13 17:46:00,534 | INFO     | chi2: 9.56869959500502e-05
[2025-10-13 13:46:43] 2025-10-13 17:46:00,535 | INFO     | -- intersect: -7824623793.321617
[2025-10-13 13:46:43] 2025-10-13 17:46:00,535 | INFO     | current memory leak: 4.45 B/s (using 72 data points, chi2=0.00)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,535 | INFO     | could have reported an average CPU frequency of 1866 MHz (7 samples)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,535 | INFO     | ..............................
[2025-10-13 13:46:43] 2025-10-13 17:46:00,535 | INFO     | . Timing measurements:
[2025-10-13 13:46:43] 2025-10-13 17:46:00,535 | INFO     | . get job = 0 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | . initial setup = 2 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | . payload setup = 7 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | . stage-in = 0 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | . payload execution = 6237 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | . stage-out = 0 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | . log creation = 0 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,536 | INFO     | ..............................
[2025-10-13 13:46:43] 2025-10-13 17:46:00,620 | INFO     | 
[2025-10-13 13:46:43] 2025-10-13 17:46:00,620 | INFO     | job summary report
[2025-10-13 13:46:43] 2025-10-13 17:46:00,620 | INFO     | --------------------------------------------------
[2025-10-13 13:46:43] 2025-10-13 17:46:00,620 | INFO     | PanDA job id: 6841069816
[2025-10-13 13:46:43] 2025-10-13 17:46:00,621 | INFO     | task id: 46676269
[2025-10-13 13:46:43] 2025-10-13 17:46:00,621 | INFO     | errors: (none)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,621 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:46:43] 2025-10-13 17:46:00,621 | INFO     | pilot state: finished 
[2025-10-13 13:46:43] 2025-10-13 17:46:00,621 | INFO     | transexitcode: 0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,621 | INFO     | exeerrorcode: 0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | exeerrordiag: 
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | exitcode: 0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | exitmsg: OK
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | cpuconsumptiontime: 47110 s
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | nevents: 400
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | neventsw: 0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | pid: 2057
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | pgrp: 2057
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | corecount: 8
[2025-10-13 13:46:43] 2025-10-13 17:46:00,622 | INFO     | event service: False
[2025-10-13 13:46:43] 2025-10-13 17:46:00,623 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 6248: 2376172, 6250: 2385354, 6255: 2385492}
[2025-10-13 13:46:43] 2025-10-13 17:46:00,623 | INFO     | --------------------------------------------------
[2025-10-13 13:46:43] 2025-10-13 17:46:00,623 | INFO     | 
[2025-10-13 13:46:43] 2025-10-13 17:46:00,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 13:46:43] 2025-10-13 17:46:00,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,645 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,645 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,647 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,647 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,647 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,647 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:46:43] 2025-10-13 17:46:00,648 | INFO     | job 6841069816 has completed (purged errors)
[2025-10-13 13:46:43] 2025-10-13 17:46:00,648 | INFO     | overall cleanup function is called
[2025-10-13 13:46:43] 2025-10-13 17:46:01,654 | INFO     | --- collectZombieJob: --- 10, [2057]
[2025-10-13 13:46:43] 2025-10-13 17:46:01,654 | INFO     | zombie collector waiting for pid 2057
[2025-10-13 13:46:43] 2025-10-13 17:46:01,655 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:46:43] 2025-10-13 17:46:01,655 | INFO     | collected zombie processes
[2025-10-13 13:46:43] 2025-10-13 17:46:01,655 | INFO     | will attempt to kill all subprocesses of pid=2057
[2025-10-13 13:46:43] 2025-10-13 17:46:01,753 | INFO     | process IDs to be killed: [2057] (in reverse order)
[2025-10-13 13:46:43] 2025-10-13 17:46:01,802 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:46:43] 2025-10-13 17:46:01,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:46:43] 2025-10-13 17:46:01,805 | INFO     | did not find any defunct processes belonging to 2057
[2025-10-13 13:46:43] 2025-10-13 17:46:01,809 | INFO     | did not find any defunct processes belonging to 2057
[2025-10-13 13:46:43] 2025-10-13 17:46:01,809 | INFO     | ready for new job
[2025-10-13 13:46:43] 2025-10-13 17:46:01,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:46:43] 2025-10-13 17:46:01,810 | INFO     | ***************************************
[2025-10-13 13:46:43] 2025-10-13 17:46:01,811 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:46:43] 2025-10-13 17:46:01,811 | INFO     | ***************************************
[2025-10-13 13:46:43] 2025-10-13 17:46:01,811 | INFO     | 
[2025-10-13 13:46:43] 2025-10-13 17:46:01,812 | INFO     | architecture information:
[2025-10-13 13:46:43] 2025-10-13 17:46:01,812 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:46:43] 2025-10-13 17:46:01,826 | INFO     | cat /etc/os-release:
[2025-10-13 13:46:43] NAME="CentOS Linux"
[2025-10-13 13:46:43] VERSION="7 (Core)"
[2025-10-13 13:46:43] ID="centos"
[2025-10-13 13:46:43] ID_LIKE="rhel fedora"
[2025-10-13 13:46:43] VERSION_ID="7"
[2025-10-13 13:46:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:46:43] ANSI_COLOR="0;31"
[2025-10-13 13:46:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:46:43] HOME_URL="https://www.centos.org/"
[2025-10-13 13:46:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:46:43] 
[2025-10-13 13:46:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:46:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:46:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:46:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:46:43] 
[2025-10-13 13:46:43] 2025-10-13 17:46:01,826 | INFO     | ***************************************
[2025-10-13 13:46:43] 2025-10-13 17:46:02,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 13:46:43] 2025-10-13 17:46:02,345 | INFO     | sufficient remaining disk space (29186064384 B)
[2025-10-13 13:46:43] 2025-10-13 17:46:02,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:46:43] 2025-10-13 17:46:02,345 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:46:43] 2025-10-13 17:46:02,346 | INFO     | update_server=False
[2025-10-13 13:46:43] 2025-10-13 17:46:02,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:46:43] 2025-10-13 17:46:02,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:46:43] 2025-10-13 17:46:02,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:46:43] 2025-10-13 17:46:02,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:46:43] 2025-10-13 17:46:02,547 | INFO     | aborting loop
[2025-10-13 13:46:43] 2025-10-13 17:46:02,616 | INFO     | all data control threads have been joined
[2025-10-13 13:46:43] 2025-10-13 17:46:02,715 | INFO     | all job control threads have been joined
[2025-10-13 13:46:43] 2025-10-13 17:46:02,847 | INFO     | all payload control threads have been joined
[2025-10-13 13:46:43] 2025-10-13 17:46:03,351 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,352 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,488 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,553 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,621 | INFO     | [data] control thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,721 | INFO     | [job] control thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,724 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:03,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:46:43] 2025-10-13 17:46:03,852 | INFO     | [payload] control thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:04,191 | INFO     | [job] validate thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:04,397 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:04,417 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:04,513 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:04,782 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:05,843 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:06,352 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:13,254 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:46:43] 2025-10-13 17:46:14,259 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:46:43] 2025-10-13 17:46:26,369 [wrapper] supervise_pilot (15 min periods counter: 8)
[2025-10-13 13:46:43] 2025-10-13 17:46:32,922 | INFO     | PID=27485 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 13:46:43] 2025-10-13 17:46:32,922 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:46:43] 2025-10-13 17:46:32,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:46:43] 2025-10-13 17:46:32,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:46:43] 2025-10-13 17:46:38,372 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:46:43] 2025-10-13 17:46:38,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965467342656)>', '<ExcThread(monitor, started 139964570388224)>']
[2025-10-13 13:46:43] 2025-10-13 17:46:38,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:46:43] 2025-10-13 17:46:38,951 | INFO     | [monitor] control thread has ended
[2025-10-13 13:46:43] 2025-10-13 17:46:43,678 | INFO     | all workflow threads have been joined
[2025-10-13 13:46:43] 2025-10-13 17:46:43,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:46:43] 2025-10-13 17:46:43,679 | INFO     | traces error code: 0
[2025-10-13 13:46:43] 2025-10-13 17:46:43,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:46:43] 2025-10-13 17:46:43,764 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:46:43] 2025-10-13 17:46:43,768 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:46:43] 2025-10-13 17:46:43,772 [wrapper] pilotpid: 27485
[2025-10-13 13:46:43] 2025-10-13 17:46:43,775 [wrapper] Pilot exit status: 0
[2025-10-13 13:46:43] 2025-10-13 17:46:43,791 [wrapper] pandaids: 6841069816
[2025-10-13 13:46:43] 2025-10-13 17:46:43,826 [wrapper] cleanup supervisor_pilot 23392 27486
[2025-10-13 13:46:43] 2025-10-13 17:46:43,830 [wrapper] Test setup, not cleaning
[2025-10-13 13:46:43] 2025-10-13 17:46:43,833 [wrapper] apfmon messages muted
[2025-10-13 13:46:43] 2025-10-13 17:46:43,837 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:46:43] 2025-10-13 17:46:43,841 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:46:43]  *** Error codes and diagnostics ***
[2025-10-13 13:46:43]     "exeErrorCode": 0,
[2025-10-13 13:46:43]     "exeErrorDiag": "",
[2025-10-13 13:46:43]     "pilotErrorCode": 0,
[2025-10-13 13:46:43]     "pilotErrorDiag": "",
[2025-10-13 13:46:43]  *** Listing of results directory ***
[2025-10-13 13:46:43] total 410576
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 13:46:43] -rwx------ 1 boincer umatlas     36292 Oct 12 21:10 runpilot2-wrapper.sh
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 21:10 queuedata.json
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas       100 Oct 13 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:46:43] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 12:01 run_atlas
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas       105 Oct 13 12:01 job.xml
[2025-10-13 13:46:43] -rw-r--r-- 2 boincer umatlas 220791694 Oct 13 12:01 EVNT.46676267._004721.pool.root.1
[2025-10-13 13:46:43] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 12:01 input.tar.gz
[2025-10-13 13:46:43] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 12:01 start_atlas.sh
[2025-10-13 13:46:43] drwxrwx--x 2 boincer umatlas      4096 Oct 13 12:01 shared
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas         0 Oct 13 12:01 boinc_lockfile
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 12:01 pandaJob.out
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas    972783 Oct 13 12:01 agis_schedconf.cvmfs.json
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas   1560580 Oct 13 12:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:46:43] drwx------ 5 boincer umatlas      4096 Oct 13 12:01 pilot3
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas      5951 Oct 13 13:37 init_data.xml
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas 193258697 Oct 13 13:45 HITS.46676269._093856.pool.root.1
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas       529 Oct 13 13:45 boinc_task_state.xml
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas      1049 Oct 13 13:45 memory_monitor_summary.json
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas    343358 Oct 13 13:45 log.46676269._093856.job.log.tgz.1
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas      7851 Oct 13 13:46 heartbeat.json
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 13:46 boinc_mmap_file
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas        27 Oct 13 13:46 wrapper_checkpoint.txt
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas        95 Oct 13 13:46 pilot_heartbeat.json
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas      4818 Oct 13 13:46 pilotlog.txt
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas    899612 Oct 13 13:46 log.46676269._093856.job.log.1
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas       357 Oct 13 13:46 output.list
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas       620 Oct 13 13:46 runtime_log
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas   1259520 Oct 13 13:46 result.tar.gz
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 13:46 runtime_log.err
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas       659 Oct 13 13:46 cwlNDmnFMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhKmNDmV6EFIm.diag
[2025-10-13 13:46:43] -rw-r--r-- 1 boincer umatlas     20824 Oct 13 13:46 stderr.txt
[2025-10-13 13:46:43] HITS file was successfully produced:
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas 193258697 Oct 13 13:45 shared/HITS.pool.root.1
[2025-10-13 13:46:43]  *** Contents of shared directory: ***
[2025-10-13 13:46:43] total 406160
[2025-10-13 13:46:43] -rw-r--r-- 2 boincer umatlas 220791694 Oct 13 12:01 ATLAS.root_0
[2025-10-13 13:46:43] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 12:01 input.tar.gz
[2025-10-13 13:46:43] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 12:01 start_atlas.sh
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas 193258697 Oct 13 13:45 HITS.pool.root.1
[2025-10-13 13:46:43] -rw------- 1 boincer umatlas   1259520 Oct 13 13:46 result.tar.gz
13:46:45 (23799): run_atlas exited; CPU time 46916.933879
13:46:45 (23799): called boinc_finish(0)

</stderr_txt>
]]>

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