Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:10:30 (231167): wrapper (7.7.26015): starting
01:10:30 (231167): wrapper: running run_atlas (--nthreads 4)
[2025-10-14 01:10:30] Arguments: --nthreads 4
[2025-10-14 01:10:30] Threads: 4
[2025-10-14 01:10:30] Checking for CVMFS
[2025-10-14 01:10:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 01:10:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 01:10:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 01:10:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 01:10:30] 2.9.2.0 3212 647 75732 151676 1 57 33965120 36864000 0 130560 0 589366 99.991 22694 926 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-14 01:10:30] CVMFS is ok
[2025-10-14 01:10:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 01:10:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 01:10:30] Further information can be found at the LHC@home message board.
[2025-10-14 01:10:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 01:10:30] Checking for apptainer binary...
[2025-10-14 01:10:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 01:10:30] Running /usr/bin/apptainer --version
[2025-10-14 01:10:30] apptainer version 1.4.1-1.1
[2025-10-14 01:10:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 01:10:30] magicA250
[2025-10-14 01:10:30] apptainer works
[2025-10-14 01:10:30] Set ATHENA_PROC_NUMBER=4
[2025-10-14 01:10:30] Set ATHENA_CORE_NUMBER=4
[2025-10-14 01:10:30] Starting ATLAS job with PandaID=6840969730
[2025-10-14 01:10:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 02:26:00]  *** The last 200 lines of the pilot log: ***
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | job 6840969730 has completed (purged errors)
[2025-10-14 02:26:00] 2025-10-14 00:25:28,248 | INFO     | overall cleanup function is called
[2025-10-14 02:26:00] 2025-10-14 00:25:28,406 | INFO     | PID=234948 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 02:26:00] 2025-10-14 00:25:29,253 | INFO     | --- collectZombieJob: --- 10, [241537]
[2025-10-14 02:26:00] 2025-10-14 00:25:29,253 | INFO     | zombie collector waiting for pid 241537
[2025-10-14 02:26:00] 2025-10-14 00:25:29,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 02:26:00] 2025-10-14 00:25:29,253 | INFO     | collected zombie processes
[2025-10-14 02:26:00] 2025-10-14 00:25:29,253 | INFO     | will attempt to kill all subprocesses of pid=241537
[2025-10-14 02:26:00] 2025-10-14 00:25:29,296 | INFO     | process IDs to be killed: [241537] (in reverse order)
[2025-10-14 02:26:00] 2025-10-14 00:25:29,329 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 02:26:00] 2025-10-14 00:25:29,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 02:26:00] 2025-10-14 00:25:29,331 | INFO     | did not find any defunct processes belonging to 241537
[2025-10-14 02:26:00] 2025-10-14 00:25:29,332 | INFO     | did not find any defunct processes belonging to 241537
[2025-10-14 02:26:00] 2025-10-14 00:25:29,332 | INFO     | ready for new job
[2025-10-14 02:26:00] 2025-10-14 00:25:29,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 02:26:00] 2025-10-14 00:25:29,333 | INFO     | ***************************************
[2025-10-14 02:26:00] 2025-10-14 00:25:29,333 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 02:26:00] 2025-10-14 00:25:29,333 | INFO     | ***************************************
[2025-10-14 02:26:00] 2025-10-14 00:25:29,333 | INFO     | 
[2025-10-14 02:26:00] 2025-10-14 00:25:29,334 | INFO     | architecture information:
[2025-10-14 02:26:00] 2025-10-14 00:25:29,334 | INFO     | executing command: cat /etc/os-release
[2025-10-14 02:26:00] 2025-10-14 00:25:29,348 | INFO     | cat /etc/os-release:
[2025-10-14 02:26:00] NAME="CentOS Linux"
[2025-10-14 02:26:00] VERSION="7 (Core)"
[2025-10-14 02:26:00] ID="centos"
[2025-10-14 02:26:00] ID_LIKE="rhel fedora"
[2025-10-14 02:26:00] VERSION_ID="7"
[2025-10-14 02:26:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 02:26:00] ANSI_COLOR="0;31"
[2025-10-14 02:26:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 02:26:00] HOME_URL="https://www.centos.org/"
[2025-10-14 02:26:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 02:26:00] 
[2025-10-14 02:26:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 02:26:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 02:26:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 02:26:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 02:26:00] 
[2025-10-14 02:26:00] 2025-10-14 00:25:29,348 | INFO     | ***************************************
[2025-10-14 02:26:00] 2025-10-14 00:25:29,851 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-14 02:26:00] 2025-10-14 00:25:29,868 | INFO     | sufficient remaining disk space (327514324992 B)
[2025-10-14 02:26:00] 2025-10-14 00:25:29,868 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 02:26:00] 2025-10-14 00:25:29,868 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 02:26:00] 2025-10-14 00:25:29,868 | INFO     | update_server=False
[2025-10-14 02:26:00] 2025-10-14 00:25:29,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 02:26:00] 2025-10-14 00:25:29,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 02:26:00] 2025-10-14 00:25:29,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 02:26:00] 2025-10-14 00:25:29,869 | INFO     | aborting loop
[2025-10-14 02:26:00] 2025-10-14 00:25:30,686 | INFO     | all data control threads have been joined
[2025-10-14 02:26:00] 2025-10-14 00:25:30,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 02:26:00] 2025-10-14 00:25:30,874 | INFO     | [job] retrieve thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:30,874 | INFO     | [job] queue monitor thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:30,874 | INFO     | [job] job monitor thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:30,896 | INFO     | all job control threads have been joined
[2025-10-14 02:26:00] 2025-10-14 00:25:31,110 | INFO     | all payload control threads have been joined
[2025-10-14 02:26:00] 2025-10-14 00:25:31,309 | INFO     | [payload] validate_post thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:31,586 | INFO     | [payload] failed_post thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:31,597 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:31,597 | INFO     | [job] validate thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:31,692 | INFO     | [data] control thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:31,731 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:31,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 02:26:00] 2025-10-14 00:25:31,902 | INFO     | [job] control thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:32,070 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:32,099 | INFO     | [data] copytool_in thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:32,116 | INFO     | [payload] control thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:32,307 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:32,795 | INFO     | [data] copytool_out thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:35,776 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 02:26:00] 2025-10-14 00:25:36,984 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-14 02:26:00] 2025-10-14 00:25:44,015 | INFO     | [monitor] cgroup control has ended
[2025-10-14 02:26:00] 2025-10-14 00:25:44,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378658711360)>', '<ExcThread(monitor, started 140378145531648)>']
[2025-10-14 02:26:00] 2025-10-14 00:25:49,680 | INFO     | all workflow threads have been joined
[2025-10-14 02:26:00] 2025-10-14 00:25:49,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 02:26:00] 2025-10-14 00:25:49,681 | INFO     | traces error code: 0
[2025-10-14 02:26:00] 2025-10-14 00:25:49,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 02:26:00] 2025-10-14 00:26:00,523 | INFO     | PID=234948 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-14 02:26:00] 2025-10-14 00:26:00,523 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 02:26:00] 2025-10-14 00:26:00,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 02:26:00] 2025-10-14 00:26:00,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 02:26:00] 2025-10-14 00:26:00,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 02:26:00] 2025-10-14 00:26:00,523 | INFO     | [monitor] control thread has ended
[2025-10-14 02:26:00] 2025-10-14 00:26:00,610 [wrapper] ==== pilot stdout END ====
[2025-10-14 02:26:00] 2025-10-14 00:26:00,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 02:26:00] 2025-10-14 00:26:00,618 [wrapper] pilotpid: 234948
[2025-10-14 02:26:00] 2025-10-14 00:26:00,622 [wrapper] Pilot exit status: 0
[2025-10-14 02:26:00] 2025-10-14 00:26:00,634 [wrapper] pandaids: 6840969730
[2025-10-14 02:26:00] 2025-10-14 00:26:00,656 [wrapper] cleanup supervisor_pilot  256454 234949
[2025-10-14 02:26:00] 2025-10-14 00:26:00,660 [wrapper] Test setup, not cleaning
[2025-10-14 02:26:00] 2025-10-14 00:26:00,664 [wrapper] apfmon messages muted
[2025-10-14 02:26:00] 2025-10-14 00:26:00,668 [wrapper] ==== wrapper stdout END ====
[2025-10-14 02:26:00] 2025-10-14 00:26:00,672 [wrapper] ==== wrapper stderr END ====
[2025-10-14 02:26:00]  *** Error codes and diagnostics ***
[2025-10-14 02:26:00]     "exeErrorCode": 0,
[2025-10-14 02:26:00]     "exeErrorDiag": "",
[2025-10-14 02:26:00]     "pilotErrorCode": 0,
[2025-10-14 02:26:00]     "pilotErrorDiag": "",
[2025-10-14 02:26:00]  *** Listing of results directory ***
[2025-10-14 02:26:00] total 416296
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-14 02:26:00] -rwx------ 1 boinc boinc     36292 Oct 13 01:41 runpilot2-wrapper.sh
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:41 queuedata.json
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc       100 Oct 14 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 02:26:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 14 01:10 run_atlas
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc       105 Oct 14 01:10 job.xml
[2025-10-14 02:26:00] -rw-r--r-- 2 boinc boinc 222468087 Oct 14 01:10 EVNT.46676267._004665.pool.root.1
[2025-10-14 02:26:00] -rw-r--r-- 2 boinc boinc    569677 Oct 14 01:10 input.tar.gz
[2025-10-14 02:26:00] -rw-r--r-- 2 boinc boinc     15120 Oct 14 01:10 start_atlas.sh
[2025-10-14 02:26:00] drwxrwx--x 2 boinc boinc      4096 Oct 14 01:10 shared
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc         0 Oct 14 01:10 boinc_setup_complete
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc      6376 Oct 14 01:10 init_data.xml
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc         0 Oct 14 01:10 boinc_lockfile
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc      2550 Oct 14 01:10 pandaJob.out
[2025-10-14 02:26:00] -rw------- 1 boinc boinc    972799 Oct 14 01:10 agis_schedconf.cvmfs.json
[2025-10-14 02:26:00] -rw------- 1 boinc boinc   1560580 Oct 14 01:10 agis_ddmendpoints.agis.ALL.json
[2025-10-14 02:26:00] drwx------ 5 boinc boinc      4096 Oct 14 01:10 pilot3
[2025-10-14 02:26:00] -rw------- 1 boinc boinc 198064437 Oct 14 02:24 HITS.46676269._092414.pool.root.1
[2025-10-14 02:26:00] -rw------- 1 boinc boinc        95 Oct 14 02:25 pilot_heartbeat.json
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc       530 Oct 14 02:25 boinc_task_state.xml
[2025-10-14 02:26:00] -rw------- 1 boinc boinc      1024 Oct 14 02:25 memory_monitor_summary.json
[2025-10-14 02:26:00] -rw------- 1 boinc boinc    274261 Oct 14 02:25 log.46676269._092414.job.log.tgz.1
[2025-10-14 02:26:00] -rw------- 1 boinc boinc      7772 Oct 14 02:25 heartbeat.json
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc      8192 Oct 14 02:25 boinc_mmap_file
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc        27 Oct 14 02:25 wrapper_checkpoint.txt
[2025-10-14 02:26:00] -rw------- 1 boinc boinc       746 Oct 14 02:26 pilotlog.txt
[2025-10-14 02:26:00] -rw------- 1 boinc boinc    662984 Oct 14 02:26 log.46676269._092414.job.log.1
[2025-10-14 02:26:00] -rw------- 1 boinc boinc       357 Oct 14 02:26 output.list
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc       620 Oct 14 02:26 runtime_log
[2025-10-14 02:26:00] -rw------- 1 boinc boinc    952320 Oct 14 02:26 result.tar.gz
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc      8792 Oct 14 02:26 runtime_log.err
[2025-10-14 02:26:00] -rw------- 1 boinc boinc       661 Oct 14 02:26 fW4NDmwrKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmf4lNDm9HvrOo.diag
[2025-10-14 02:26:00] -rw-r--r-- 1 boinc boinc     11830 Oct 14 02:26 stderr.txt
[2025-10-14 02:26:00] HITS file was successfully produced:
[2025-10-14 02:26:00] -rw------- 1 boinc boinc 198064437 Oct 14 02:24 shared/HITS.pool.root.1
[2025-10-14 02:26:00]  *** Contents of shared directory: ***
[2025-10-14 02:26:00] total 412196
[2025-10-14 02:26:00] -rw-r--r-- 2 boinc boinc 222468087 Oct 14 01:10 ATLAS.root_0
[2025-10-14 02:26:00] -rw-r--r-- 2 boinc boinc    569677 Oct 14 01:10 input.tar.gz
[2025-10-14 02:26:00] -rw-r--r-- 2 boinc boinc     15120 Oct 14 01:10 start_atlas.sh
[2025-10-14 02:26:00] -rw------- 1 boinc boinc 198064437 Oct 14 02:24 HITS.pool.root.1
[2025-10-14 02:26:00] -rw------- 1 boinc boinc    952320 Oct 14 02:26 result.tar.gz
02:26:02 (231167): run_atlas exited; CPU time 16739.654393
02:26:02 (231167): called boinc_finish(0)

</stderr_txt>
]]>

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