Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:39:52 (20465): wrapper (7.7.26015): starting
11:39:52 (20465): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 11:39:52] Arguments: --nthreads 12
[2025-10-13 11:39:52] Threads: 12
[2025-10-13 11:39:52] Checking for CVMFS
[2025-10-13 11:39:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:39:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:39:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:39:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:39:53] 2.11.2.0 3297 224467 96228 151666 2 1 16041936 20275201 1 130560 2 110585127 99.984 13031417 12343 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 11:39:53] CVMFS is ok
[2025-10-13 11:39:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:39:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:39:53] Further information can be found at the LHC@home message board.
[2025-10-13 11:39:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:39:53] Checking for apptainer binary...
[2025-10-13 11:39:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:39:53] Running /usr/bin/apptainer --version
[2025-10-13 11:39:53] apptainer version 1.3.2-1.el7
[2025-10-13 11:39:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:39:54] c-205-22.aglt2.org
[2025-10-13 11:39:54] apptainer works
[2025-10-13 11:39:54] Set ATHENA_PROC_NUMBER=12
[2025-10-13 11:39:54] Set ATHENA_CORE_NUMBER=12
[2025-10-13 11:39:54] Starting ATLAS job with PandaID=6843109348
[2025-10-13 11:39:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:50:22]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:50:22]  status_code=0
[2025-10-13 12:50:22]  storage_token=
[2025-10-13 12:50:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6843109348/log.46676269._096902.job.log.tgz.1
[2025-10-13 12:50:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/94/log.46676269._096902.job.log.tgz.1
[2025-10-13 12:50:22]  workdir=None
[2025-10-13 12:50:22] ]
[2025-10-13 12:50:22] 2025-10-13 16:49:27,534 | INFO     | transferring file log.46676269._096902.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6843109348/log.46676269._096902.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 12:50:22] 2025-10-13 16:49:27,534 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6843109348/log.46676269._096902.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._096902.job
[2025-10-13 12:50:22] 2025-10-13 16:49:27,557 | INFO     | adding to output.list: log.46676269._096902.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/94/log.46676269._096902.job.log.tg
[2025-10-13 12:50:22] 2025-10-13 16:49:27,558 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 12:50:22] 2025-10-13 16:49:27,558 | INFO     | summary of transferred files:
[2025-10-13 12:50:22] 2025-10-13 16:49:27,558 | INFO     |  -- lfn=log.46676269._096902.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 12:50:22] 2025-10-13 16:49:27,558 | INFO     | stage-out finished correctly
[2025-10-13 12:50:22] 2025-10-13 16:49:27,881 | WARNING  | process 30662 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 12:50:22] 2025-10-13 16:49:27,881 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6843109348/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 12:50:22] 2025-10-13 16:49:27,965 | INFO     | number of running child processes to parent process 30662: 1
[2025-10-13 12:50:22] 2025-10-13 16:49:27,965 | INFO     | maximum number of monitored processes: 6
[2025-10-13 12:50:22] 2025-10-13 16:49:29,495 | INFO     | time since job start (4160s) is within the limit (172800.0s)
[2025-10-13 12:50:22] 2025-10-13 16:49:29,684 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 12:50:22] 2025-10-13 16:49:30,468 | INFO     | monitor loop #309: job 0:6843109348 is in state 'finished'
[2025-10-13 12:50:22] 2025-10-13 16:49:30,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:50:22] 2025-10-13 16:49:31,292 | INFO     | job 6843109348 has state=finished
[2025-10-13 12:50:22] 2025-10-13 16:49:31,292 | INFO     | preparing for final server update for job 6843109348 in state='finished'
[2025-10-13 12:50:22] 2025-10-13 16:49:31,293 | INFO     | this job has now completed (state=finished)
[2025-10-13 12:50:22] 2025-10-13 16:49:31,293 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 12:50:22] 2025-10-13 16:49:31,293 | INFO     | log transfer has been attempted: DONE
[2025-10-13 12:50:22] 2025-10-13 16:49:31,293 | INFO     | job 6843109348 has finished - writing final server update
[2025-10-13 12:50:22] 2025-10-13 16:49:31,293 | INFO     | total number of processed events: 400 (read)
[2025-10-13 12:50:22] 2025-10-13 16:49:31,294 | INFO     | executing command: lscpu
[2025-10-13 12:50:22] 2025-10-13 16:49:31,320 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 12:50:22] 2025-10-13 16:49:31,501 | INFO     | time since job start (4162s) is within the limit (172800.0s)
[2025-10-13 12:50:22] 2025-10-13 16:49:32,972 | INFO     | monitor loop #310: job 0:6843109348 is in state 'finished'
[2025-10-13 12:50:22] 2025-10-13 16:49:32,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:50:22] 2025-10-13 16:49:33,507 | INFO     | time since job start (4164s) is within the limit (172800.0s)
[2025-10-13 12:50:22] 2025-10-13 16:49:35,475 | INFO     | monitor loop #311: job 0:6843109348 is in state 'finished'
[2025-10-13 12:50:22] 2025-10-13 16:49:35,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:50:22] 2025-10-13 16:49:35,512 | INFO     | time since job start (4166s) is within the limit (172800.0s)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,069 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 12:50:22] 2025-10-13 16:49:37,073 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-10-13 12:50:22] 2025-10-13 16:49:37,075 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6843109348/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,076 | INFO     | extracted standard info from prmon json
[2025-10-13 12:50:22] 2025-10-13 16:49:37,076 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 12:50:22] 2025-10-13 16:49:37,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 12:50:22] 2025-10-13 16:49:37,077 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:50:22] 2025-10-13 16:49:37,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:50:22] 2025-10-13 16:49:37,078 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:50:22] 2025-10-13 16:49:37,078 | INFO     | sum of square deviations: 70364110.0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,079 | INFO     | sum of deviations: -7340469221.0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,079 | INFO     | mean x: 1760372173.0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,079 | INFO     | mean y: 2801020.9836065574
[2025-10-13 12:50:22] 2025-10-13 16:49:37,079 | INFO     | -- intersect: 183646959291.60464
[2025-10-13 12:50:22] 2025-10-13 16:49:37,079 | INFO     | intersect: 183646959291.60464
[2025-10-13 12:50:22] 2025-10-13 16:49:37,079 | INFO     | chi2: 0.04808982990614876
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | -- intersect: 183646959291.60464
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | current memory leak: -104.32 B/s (using 61 data points, chi2=0.05)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | could have reported an average CPU frequency of 2071 MHz (6 samples)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | ..............................
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | . Timing measurements:
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | . get job = 0 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,080 | INFO     | . initial setup = 2 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,081 | INFO     | . payload setup = 7 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,081 | INFO     | . stage-in = 0 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,081 | INFO     | . payload execution = 4129 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,081 | INFO     | . stage-out = 0 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,081 | INFO     | . log creation = 0 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,081 | INFO     | ..............................
[2025-10-13 12:50:22] 2025-10-13 16:49:37,164 | INFO     | 
[2025-10-13 12:50:22] 2025-10-13 16:49:37,164 | INFO     | job summary report
[2025-10-13 12:50:22] 2025-10-13 16:49:37,164 | INFO     | --------------------------------------------------
[2025-10-13 12:50:22] 2025-10-13 16:49:37,164 | INFO     | PanDA job id: 6843109348
[2025-10-13 12:50:22] 2025-10-13 16:49:37,165 | INFO     | task id: 46676269
[2025-10-13 12:50:22] 2025-10-13 16:49:37,165 | INFO     | errors: (none)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,165 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:50:22] 2025-10-13 16:49:37,165 | INFO     | pilot state: finished 
[2025-10-13 12:50:22] 2025-10-13 16:49:37,165 | INFO     | transexitcode: 0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,165 | INFO     | exeerrorcode: 0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | exeerrordiag: 
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | exitcode: 0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | exitmsg: OK
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | cpuconsumptiontime: 45183 s
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | nevents: 400
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | neventsw: 0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | pid: 30662
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | pgrp: 30662
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | corecount: 12
[2025-10-13 12:50:22] 2025-10-13 16:49:37,166 | INFO     | event service: False
[2025-10-13 12:50:22] 2025-10-13 16:49:37,167 | INFO     | sizes: {0: 2348806, 5: 2349068, 11: 2349124, 4140: 2375021, 4142: 2384019, 4144: 2384075, 4151: 2384397}
[2025-10-13 12:50:22] 2025-10-13 16:49:37,167 | INFO     | --------------------------------------------------
[2025-10-13 12:50:22] 2025-10-13 16:49:37,167 | INFO     | 
[2025-10-13 12:50:22] 2025-10-13 16:49:37,167 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 12:50:22] 2025-10-13 16:49:37,190 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,190 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,190 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,190 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,190 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,190 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,192 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,192 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,192 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,192 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,192 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,192 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,193 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:50:22] 2025-10-13 16:49:37,193 | INFO     | job 6843109348 has completed (purged errors)
[2025-10-13 12:50:22] 2025-10-13 16:49:37,193 | INFO     | overall cleanup function is called
[2025-10-13 12:50:22] 2025-10-13 16:49:38,201 | INFO     | --- collectZombieJob: --- 10, [30662]
[2025-10-13 12:50:22] 2025-10-13 16:49:38,201 | INFO     | zombie collector waiting for pid 30662
[2025-10-13 12:50:22] 2025-10-13 16:49:38,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:50:22] 2025-10-13 16:49:38,202 | INFO     | collected zombie processes
[2025-10-13 12:50:22] 2025-10-13 16:49:38,202 | INFO     | will attempt to kill all subprocesses of pid=30662
[2025-10-13 12:50:22] 2025-10-13 16:49:38,290 | INFO     | process IDs to be killed: [30662] (in reverse order)
[2025-10-13 12:50:22] 2025-10-13 16:49:38,339 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:50:22] 2025-10-13 16:49:38,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:50:22] 2025-10-13 16:49:38,342 | INFO     | did not find any defunct processes belonging to 30662
[2025-10-13 12:50:22] 2025-10-13 16:49:38,345 | INFO     | did not find any defunct processes belonging to 30662
[2025-10-13 12:50:22] 2025-10-13 16:49:38,346 | INFO     | ready for new job
[2025-10-13 12:50:22] 2025-10-13 16:49:38,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:50:22] 2025-10-13 16:49:38,347 | INFO     | ***************************************
[2025-10-13 12:50:22] 2025-10-13 16:49:38,347 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:50:22] 2025-10-13 16:49:38,347 | INFO     | ***************************************
[2025-10-13 12:50:22] 2025-10-13 16:49:38,347 | INFO     | 
[2025-10-13 12:50:22] 2025-10-13 16:49:38,348 | INFO     | architecture information:
[2025-10-13 12:50:22] 2025-10-13 16:49:38,348 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:50:22] 2025-10-13 16:49:38,362 | INFO     | cat /etc/os-release:
[2025-10-13 12:50:22] NAME="CentOS Linux"
[2025-10-13 12:50:22] VERSION="7 (Core)"
[2025-10-13 12:50:22] ID="centos"
[2025-10-13 12:50:22] ID_LIKE="rhel fedora"
[2025-10-13 12:50:22] VERSION_ID="7"
[2025-10-13 12:50:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:50:22] ANSI_COLOR="0;31"
[2025-10-13 12:50:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:50:22] HOME_URL="https://www.centos.org/"
[2025-10-13 12:50:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:50:22] 
[2025-10-13 12:50:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:50:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:50:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:50:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:50:22] 
[2025-10-13 12:50:22] 2025-10-13 16:49:38,362 | INFO     | ***************************************
[2025-10-13 12:50:22] 2025-10-13 16:49:38,865 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 12:50:22] 2025-10-13 16:49:38,882 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-13 12:50:22] 2025-10-13 16:49:38,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:50:22] 2025-10-13 16:49:38,882 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:50:22] 2025-10-13 16:49:38,882 | INFO     | update_server=False
[2025-10-13 12:50:22] 2025-10-13 16:49:38,883 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:50:22] 2025-10-13 16:49:38,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:50:22] 2025-10-13 16:49:38,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:50:22] 2025-10-13 16:49:38,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:50:22] 2025-10-13 16:49:38,983 | INFO     | aborting loop
[2025-10-13 12:50:22] 2025-10-13 16:49:39,512 | INFO     | all job control threads have been joined
[2025-10-13 12:50:22] 2025-10-13 16:49:39,773 | INFO     | all data control threads have been joined
[2025-10-13 12:50:22] 2025-10-13 16:49:39,888 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:39,889 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:39,988 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,135 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,207 | INFO     | [job] validate thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:50:22] 2025-10-13 16:49:40,290 | INFO     | all payload control threads have been joined
[2025-10-13 12:50:22] 2025-10-13 16:49:40,331 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,408 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,517 | INFO     | [job] control thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,778 | INFO     | [data] control thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:40,889 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:41,031 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:41,115 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:41,178 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:41,295 | INFO     | [payload] control thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:49:44,277 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:50:22] 2025-10-13 16:50:08,716 | INFO     | PID=24287 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 12:50:22] 2025-10-13 16:50:08,717 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:50:22] 2025-10-13 16:50:08,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:50:22] 2025-10-13 16:50:08,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:50:22] 2025-10-13 16:50:15,820 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:50:22] 2025-10-13 16:50:17,179 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515537618752)>', '<ExcThread(monitor, started 140514846287616)>']
[2025-10-13 12:50:22] 2025-10-13 16:50:17,758 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:50:22] 2025-10-13 16:50:17,759 | INFO     | [monitor] control thread has ended
[2025-10-13 12:50:22] 2025-10-13 16:50:22,199 | INFO     | all workflow threads have been joined
[2025-10-13 12:50:22] 2025-10-13 16:50:22,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:50:22] 2025-10-13 16:50:22,199 | INFO     | traces error code: 0
[2025-10-13 12:50:22] 2025-10-13 16:50:22,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:50:22] 2025-10-13 16:50:22,288 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:50:22] 2025-10-13 16:50:22,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:50:22] 2025-10-13 16:50:22,296 [wrapper] pilotpid: 24287
[2025-10-13 12:50:22] 2025-10-13 16:50:22,300 [wrapper] Pilot exit status: 0
[2025-10-13 12:50:22] 2025-10-13 16:50:22,315 [wrapper] pandaids: 6843109348
[2025-10-13 12:50:22] 2025-10-13 16:50:22,359 [wrapper] cleanup supervisor_pilot  1577 24288
[2025-10-13 12:50:22] 2025-10-13 16:50:22,363 [wrapper] Test setup, not cleaning
[2025-10-13 12:50:22] 2025-10-13 16:50:22,367 [wrapper] apfmon messages muted
[2025-10-13 12:50:22] 2025-10-13 16:50:22,371 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:50:22] 2025-10-13 16:50:22,375 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:50:22]  *** Error codes and diagnostics ***
[2025-10-13 12:50:22]     "exeErrorCode": 0,
[2025-10-13 12:50:22]     "exeErrorDiag": "",
[2025-10-13 12:50:22]     "pilotErrorCode": 0,
[2025-10-13 12:50:22]     "pilotErrorDiag": "",
[2025-10-13 12:50:22]  *** Listing of results directory ***
[2025-10-13 12:50:22] total 408284
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 11:15 pilot3.tar.gz
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 11:36 queuedata.json
[2025-10-13 12:50:22] -rwx------ 1 boincer umatlas     36292 Oct 13 11:39 runpilot2-wrapper.sh
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas       100 Oct 13 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:50:22] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 11:39 run_atlas
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas       105 Oct 13 11:39 job.xml
[2025-10-13 12:50:22] -rw-r--r-- 2 boincer umatlas 222733932 Oct 13 11:39 EVNT.46676267._001495.pool.root.1
[2025-10-13 12:50:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 11:39 start_atlas.sh
[2025-10-13 12:50:22] drwxrwx--x 2 boincer umatlas      4096 Oct 13 11:39 shared
[2025-10-13 12:50:22] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 11:39 input.tar.gz
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas         0 Oct 13 11:39 boinc_lockfile
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 11:39 pandaJob.out
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas    972783 Oct 13 11:40 agis_schedconf.cvmfs.json
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas   1560580 Oct 13 11:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:50:22] drwx------ 5 boincer umatlas      4096 Oct 13 11:40 pilot3
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 12:45 init_data.xml
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas 189457485 Oct 13 12:48 HITS.46676269._096902.pool.root.1
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas       529 Oct 13 12:48 boinc_task_state.xml
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas      1046 Oct 13 12:49 memory_monitor_summary.json
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas    386960 Oct 13 12:49 log.46676269._096902.job.log.tgz.1
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas      7859 Oct 13 12:49 heartbeat.json
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas        95 Oct 13 12:50 pilot_heartbeat.json
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 12:50 boinc_mmap_file
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas        27 Oct 13 12:50 wrapper_checkpoint.txt
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas      4746 Oct 13 12:50 pilotlog.txt
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas    607834 Oct 13 12:50 log.46676269._096902.job.log.1
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas       357 Oct 13 12:50 output.list
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas       620 Oct 13 12:50 runtime_log
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas   1013760 Oct 13 12:50 result.tar.gz
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 12:50 runtime_log.err
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas       659 Oct 13 12:50 a8oNDm5oZS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsnmNDmCzaqun.diag
[2025-10-13 12:50:22] -rw-r--r-- 1 boincer umatlas     22125 Oct 13 12:50 stderr.txt
[2025-10-13 12:50:22] HITS file was successfully produced:
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas 189457485 Oct 13 12:48 shared/HITS.pool.root.1
[2025-10-13 12:50:22]  *** Contents of shared directory: ***
[2025-10-13 12:50:22] total 404108
[2025-10-13 12:50:22] -rw-r--r-- 2 boincer umatlas 222733932 Oct 13 11:39 ATLAS.root_0
[2025-10-13 12:50:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 11:39 start_atlas.sh
[2025-10-13 12:50:22] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 11:39 input.tar.gz
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas 189457485 Oct 13 12:48 HITS.pool.root.1
[2025-10-13 12:50:22] -rw------- 1 boincer umatlas   1013760 Oct 13 12:50 result.tar.gz
12:50:23 (20465): run_atlas exited; CPU time 45156.988429
12:50:23 (20465): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN