Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:36:55 (428452): wrapper (7.7.26015): starting
11:36:55 (428452): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 11:36:55] Arguments: --nthreads 8
[2025-10-13 11:36:55] Threads: 8
[2025-10-13 11:36:55] Checking for CVMFS
[2025-10-13 11:36:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:36:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:36:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:36:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:36:55] 2.13.2.0 5242 7283 133160 151666 2 26 30945947 40960001 18746 16776704 0 26910595 99.755 15399306 32807 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 11:36:55] CVMFS is ok
[2025-10-13 11:36:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:36:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:36:55] Further information can be found at the LHC@home message board.
[2025-10-13 11:36:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:36:55] Checking for apptainer binary...
[2025-10-13 11:36:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:36:55] Running /usr/bin/apptainer --version
[2025-10-13 11:36:55] apptainer version 1.4.3-1.el9
[2025-10-13 11:36:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:36:56] c-212-1.aglt2.org
[2025-10-13 11:36:56] apptainer works
[2025-10-13 11:36:56] Set ATHENA_PROC_NUMBER=8
[2025-10-13 11:36:56] Set ATHENA_CORE_NUMBER=8
[2025-10-13 11:36:56] Starting ATLAS job with PandaID=6841962963
[2025-10-13 11:36:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:03:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:03:21]  scope=mc23_13p6TeV
[2025-10-13 13:03:21]  status=None
[2025-10-13 13:03:21]  status_code=0
[2025-10-13 13:03:21]  storage_token=
[2025-10-13 13:03:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841962963/log.46676269._095657.job.log.tgz.1
[2025-10-13 13:03:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/c6/log.46676269._095657.job.log.tgz.1
[2025-10-13 13:03:21]  workdir=None
[2025-10-13 13:03:21] ]
[2025-10-13 13:03:21] 2025-10-13 17:02:06,172 | INFO     | transferring file log.46676269._095657.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841962963/log.46676269._095657.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 13:03:21] 2025-10-13 17:02:06,172 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841962963/log.46676269._095657.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._095657.job
[2025-10-13 13:03:21] 2025-10-13 17:02:06,195 | INFO     | adding to output.list: log.46676269._095657.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/c6/log.46676269._095657.job.log.tg
[2025-10-13 13:03:21] 2025-10-13 17:02:06,196 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 13:03:21] 2025-10-13 17:02:06,196 | INFO     | summary of transferred files:
[2025-10-13 13:03:21] 2025-10-13 17:02:06,196 | INFO     |  -- lfn=log.46676269._095657.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 13:03:21] 2025-10-13 17:02:06,196 | INFO     | stage-out finished correctly
[2025-10-13 13:03:21] 2025-10-13 17:02:06,546 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 13:03:21] 2025-10-13 17:02:06,945 | INFO     | PID=432349 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 13:03:21] 2025-10-13 17:02:06,946 | INFO     | .. there are 18 such processes running
[2025-10-13 13:03:21] 2025-10-13 17:02:07,946 | INFO     | time since job start (5100s) is within the limit (172800.0s)
[2025-10-13 13:03:21] 2025-10-13 17:02:08,269 | WARNING  | process 438720 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 13:03:21] 2025-10-13 17:02:08,270 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841962963/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:03:21] 2025-10-13 17:02:08,651 | INFO     | number of running child processes to parent process 438720: 1
[2025-10-13 13:03:21] 2025-10-13 17:02:08,652 | INFO     | maximum number of monitored processes: 6
[2025-10-13 13:03:21] 2025-10-13 17:02:08,799 | INFO     | job 6841962963 has state=finished
[2025-10-13 13:03:21] 2025-10-13 17:02:08,799 | INFO     | preparing for final server update for job 6841962963 in state='finished'
[2025-10-13 13:03:21] 2025-10-13 17:02:08,799 | INFO     | this job has now completed (state=finished)
[2025-10-13 13:03:21] 2025-10-13 17:02:08,799 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 13:03:21] 2025-10-13 17:02:08,799 | INFO     | log transfer has been attempted: DONE
[2025-10-13 13:03:21] 2025-10-13 17:02:08,799 | INFO     | job 6841962963 has finished - writing final server update
[2025-10-13 13:03:21] 2025-10-13 17:02:08,800 | INFO     | total number of processed events: 400 (read)
[2025-10-13 13:03:21] 2025-10-13 17:02:08,800 | INFO     | executing command: lscpu
[2025-10-13 13:03:21] 2025-10-13 17:02:08,849 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 13:03:21] 2025-10-13 17:02:09,952 | INFO     | time since job start (5102s) is within the limit (172800.0s)
[2025-10-13 13:03:21] 2025-10-13 17:02:11,155 | INFO     | monitor loop #372: job 0:6841962963 is in state 'finished'
[2025-10-13 13:03:21] 2025-10-13 17:02:11,155 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:03:21] 2025-10-13 17:02:11,958 | INFO     | time since job start (5104s) is within the limit (172800.0s)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,388 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 13:03:21] 2025-10-13 17:02:13,393 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3155.7066041666662
[2025-10-13 13:03:21] 2025-10-13 17:02:13,407 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841962963/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,408 | INFO     | extracted standard info from prmon json
[2025-10-13 13:03:21] 2025-10-13 17:02:13,408 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:03:21] 2025-10-13 17:02:13,408 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:03:21] 2025-10-13 17:02:13,408 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:03:21] 2025-10-13 17:02:13,408 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:03:21] 2025-10-13 17:02:13,410 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:03:21] 2025-10-13 17:02:13,410 | INFO     | sum of square deviations: 141539398.0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | sum of deviations: -16287518134.0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | mean x: 1760372479.0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | mean y: 2705124.3636363638
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | -- intersect: 202575975036.86557
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | intersect: 202575975036.86557
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | chi2: 0.11866554785867221
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | -- intersect: 202575975036.86557
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | current memory leak: -115.07 B/s (using 77 data points, chi2=0.12)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,411 | INFO     | could have reported an average CPU frequency of 2993 MHz (6 samples)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | ..............................
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . Timing measurements:
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . get job = 0 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . initial setup = 2 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . payload setup = 6 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . stage-in = 0 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . payload execution = 5070 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . stage-out = 0 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | . log creation = 0 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,412 | INFO     | ..............................
[2025-10-13 13:03:21] 2025-10-13 17:02:13,485 | INFO     | 
[2025-10-13 13:03:21] 2025-10-13 17:02:13,485 | INFO     | job summary report
[2025-10-13 13:03:21] 2025-10-13 17:02:13,485 | INFO     | --------------------------------------------------
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | PanDA job id: 6841962963
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | task id: 46676269
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | errors: (none)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | pilot state: finished 
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | transexitcode: 0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | exeerrorcode: 0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | exeerrordiag: 
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | exitcode: 0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | exitmsg: OK
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | cpuconsumptiontime: 33105 s
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | nevents: 400
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | neventsw: 0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | pid: 438720
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | pgrp: 438720
[2025-10-13 13:03:21] 2025-10-13 17:02:13,486 | INFO     | corecount: 8
[2025-10-13 13:03:21] 2025-10-13 17:02:13,487 | INFO     | event service: False
[2025-10-13 13:03:21] 2025-10-13 17:02:13,487 | INFO     | sizes: {0: 2348805, 1: 2348805, 5: 2349095, 11: 2349151, 5080: 2375422, 5082: 2384420, 5083: 2384604, 5089: 2384798}
[2025-10-13 13:03:21] 2025-10-13 17:02:13,487 | INFO     | --------------------------------------------------
[2025-10-13 13:03:21] 2025-10-13 17:02:13,487 | INFO     | 
[2025-10-13 13:03:21] 2025-10-13 17:02:13,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 13:03:21] 2025-10-13 17:02:13,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,510 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,511 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:03:21] 2025-10-13 17:02:13,512 | INFO     | job 6841962963 has completed (purged errors)
[2025-10-13 13:03:21] 2025-10-13 17:02:13,512 | INFO     | overall cleanup function is called
[2025-10-13 13:03:21] 2025-10-13 17:02:14,520 | INFO     | --- collectZombieJob: --- 10, [438720]
[2025-10-13 13:03:21] 2025-10-13 17:02:14,521 | INFO     | zombie collector waiting for pid 438720
[2025-10-13 13:03:21] 2025-10-13 17:02:14,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:03:21] 2025-10-13 17:02:14,521 | INFO     | collected zombie processes
[2025-10-13 13:03:21] 2025-10-13 17:02:14,521 | INFO     | will attempt to kill all subprocesses of pid=438720
[2025-10-13 13:03:21] 2025-10-13 17:02:14,896 | INFO     | process IDs to be killed: [438720] (in reverse order)
[2025-10-13 13:03:21] 2025-10-13 17:02:15,033 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:03:21] 2025-10-13 17:02:15,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:03:21] 2025-10-13 17:02:15,051 | INFO     | did not find any defunct processes belonging to 438720
[2025-10-13 13:03:21] 2025-10-13 17:02:15,066 | INFO     | did not find any defunct processes belonging to 438720
[2025-10-13 13:03:21] 2025-10-13 17:02:15,067 | INFO     | ready for new job
[2025-10-13 13:03:21] 2025-10-13 17:02:15,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:03:21] 2025-10-13 17:02:15,068 | INFO     | ***************************************
[2025-10-13 13:03:21] 2025-10-13 17:02:15,069 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:03:21] 2025-10-13 17:02:15,069 | INFO     | ***************************************
[2025-10-13 13:03:21] 2025-10-13 17:02:15,069 | INFO     | 
[2025-10-13 13:03:21] 2025-10-13 17:02:15,072 | INFO     | architecture information:
[2025-10-13 13:03:21] 2025-10-13 17:02:15,073 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:03:21] 2025-10-13 17:02:15,087 | INFO     | cat /etc/os-release:
[2025-10-13 13:03:21] NAME="CentOS Linux"
[2025-10-13 13:03:21] VERSION="7 (Core)"
[2025-10-13 13:03:21] ID="centos"
[2025-10-13 13:03:21] ID_LIKE="rhel fedora"
[2025-10-13 13:03:21] VERSION_ID="7"
[2025-10-13 13:03:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:03:21] ANSI_COLOR="0;31"
[2025-10-13 13:03:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:03:21] HOME_URL="https://www.centos.org/"
[2025-10-13 13:03:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:03:21] 
[2025-10-13 13:03:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:03:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:03:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:03:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:03:21] 
[2025-10-13 13:03:21] 2025-10-13 17:02:15,087 | INFO     | ***************************************
[2025-10-13 13:03:21] 2025-10-13 17:02:15,590 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 13:03:21] 2025-10-13 17:02:15,603 | INFO     | sufficient remaining disk space (129312489472 B)
[2025-10-13 13:03:21] 2025-10-13 17:02:15,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:03:21] 2025-10-13 17:02:15,603 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:03:21] 2025-10-13 17:02:15,603 | INFO     | update_server=False
[2025-10-13 13:03:21] 2025-10-13 17:02:15,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:03:21] 2025-10-13 17:02:15,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:03:21] 2025-10-13 17:02:15,604 | INFO     | aborting loop
[2025-10-13 13:03:21] 2025-10-13 17:02:15,893 | INFO     | all payload control threads have been joined
[2025-10-13 13:03:21] 2025-10-13 17:02:16,098 | INFO     | all data control threads have been joined
[2025-10-13 13:03:21] 2025-10-13 17:02:16,308 | INFO     | all job control threads have been joined
[2025-10-13 13:03:21] 2025-10-13 17:02:16,610 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:16,610 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:16,631 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:16,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:03:21] 2025-10-13 17:02:16,898 | INFO     | [payload] control thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,100 | INFO     | [data] control thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:03:21] 2025-10-13 17:02:17,178 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,179 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,313 | INFO     | [job] control thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,372 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,374 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:17,940 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:18,110 | INFO     | [job] validate thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:18,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:03:21] 2025-10-13 17:02:18,759 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:19,499 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:21,135 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:03:21] 2025-10-13 17:02:45,538 | INFO     | PID=432349 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 13:03:21] 2025-10-13 17:02:45,540 | INFO     | .. there are 18 such processes running
[2025-10-13 13:03:21] 2025-10-13 17:02:45,540 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:03:21] 2025-10-13 17:02:45,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:03:21] 2025-10-13 17:02:45,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:03:21] 2025-10-13 17:03:15,371 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:03:21] 2025-10-13 17:03:16,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140527367620416)>', '<ExcThread(monitor, started 140526867166976)>']
[2025-10-13 13:03:21] 2025-10-13 17:03:16,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:03:21] 2025-10-13 17:03:16,679 | INFO     | [monitor] control thread has ended
[2025-10-13 13:03:21] 2025-10-13 17:03:21,532 | INFO     | all workflow threads have been joined
[2025-10-13 13:03:21] 2025-10-13 17:03:21,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:03:21] 2025-10-13 17:03:21,533 | INFO     | traces error code: 0
[2025-10-13 13:03:21] 2025-10-13 17:03:21,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:03:21] 2025-10-13 17:03:21,705 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:03:21] 2025-10-13 17:03:21,709 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:03:21] 2025-10-13 17:03:21,712 [wrapper] pilotpid: 432349
[2025-10-13 13:03:21] 2025-10-13 17:03:21,715 [wrapper] Pilot exit status: 0
[2025-10-13 13:03:21] 2025-10-13 17:03:21,729 [wrapper] pandaids: 6841962963
[2025-10-13 13:03:21] 2025-10-13 17:03:21,825 [wrapper] cleanup supervisor_pilot  768781 432350
[2025-10-13 13:03:21] 2025-10-13 17:03:21,828 [wrapper] Test setup, not cleaning
[2025-10-13 13:03:21] 2025-10-13 17:03:21,832 [wrapper] apfmon messages muted
[2025-10-13 13:03:21] 2025-10-13 17:03:21,835 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:03:21] 2025-10-13 17:03:21,838 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:03:21]  *** Error codes and diagnostics ***
[2025-10-13 13:03:21]     "exeErrorCode": 0,
[2025-10-13 13:03:21]     "exeErrorDiag": "",
[2025-10-13 13:03:21]     "pilotErrorCode": 0,
[2025-10-13 13:03:21]     "pilotErrorDiag": "",
[2025-10-13 13:03:21]  *** Listing of results directory ***
[2025-10-13 13:03:21] total 412248
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 23:15 queuedata.json
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 23:15 pilot3.tar.gz
[2025-10-13 13:03:21] -rwx------. 1 boincer umatlas     36292 Oct 12 23:16 runpilot2-wrapper.sh
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas       100 Oct 13 11:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:03:21] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 11:36 run_atlas
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas       105 Oct 13 11:36 job.xml
[2025-10-13 13:03:21] -rw-r--r--. 2 boincer umatlas 218307512 Oct 13 11:36 EVNT.46676267._003560.pool.root.1
[2025-10-13 13:03:21] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 11:36 start_atlas.sh
[2025-10-13 13:03:21] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 11:36 shared
[2025-10-13 13:03:21] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 11:36 input.tar.gz
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas         0 Oct 13 11:36 boinc_lockfile
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 11:36 pandaJob.out
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas    972783 Oct 13 11:37 agis_schedconf.cvmfs.json
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas   1560580 Oct 13 11:37 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:03:21] drwx------. 5 boincer umatlas      4096 Oct 13 11:37 pilot3
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas 197820283 Oct 13 13:01 HITS.46676269._095657.pool.root.1
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas       529 Oct 13 13:01 boinc_task_state.xml
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas        95 Oct 13 13:01 pilot_heartbeat.json
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas      6946 Oct 13 13:01 init_data.xml
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas      1043 Oct 13 13:02 memory_monitor_summary.json
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas    322025 Oct 13 13:02 log.46676269._095657.job.log.tgz.1
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas      7795 Oct 13 13:02 heartbeat.json
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 13:03 boinc_mmap_file
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas        27 Oct 13 13:03 wrapper_checkpoint.txt
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas      4824 Oct 13 13:03 pilotlog.txt
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas    739038 Oct 13 13:03 log.46676269._095657.job.log.1
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas       357 Oct 13 13:03 output.list
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas       620 Oct 13 13:03 runtime_log
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas   1075200 Oct 13 13:03 result.tar.gz
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas       654 Oct 13 13:03 VpRLDm5DOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGcVMDm7aQLmm.diag
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 13:03 runtime_log.err
[2025-10-13 13:03:21] -rw-r--r--. 1 boincer umatlas     22019 Oct 13 13:03 stderr.txt
[2025-10-13 13:03:21] HITS file was successfully produced:
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas 197820283 Oct 13 13:01 shared/HITS.pool.root.1
[2025-10-13 13:03:21]  *** Contents of shared directory: ***
[2025-10-13 13:03:21] total 408008
[2025-10-13 13:03:21] -rw-r--r--. 2 boincer umatlas 218307512 Oct 13 11:36 ATLAS.root_0
[2025-10-13 13:03:21] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 11:36 start_atlas.sh
[2025-10-13 13:03:21] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 11:36 input.tar.gz
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas 197820283 Oct 13 13:01 HITS.pool.root.1
[2025-10-13 13:03:21] -rw-------. 1 boincer umatlas   1075200 Oct 13 13:03 result.tar.gz
13:03:23 (428452): run_atlas exited; CPU time 33252.893778
13:03:23 (428452): called boinc_finish(0)

</stderr_txt>
]]>

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