Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:29:18 (3851987): wrapper (7.7.26015): starting
11:29:18 (3851987): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 11:29:18] Arguments: --nthreads 9
[2025-10-13 11:29:18] Threads: 9
[2025-10-13 11:29:18] Checking for CVMFS
[2025-10-13 11:29:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:29:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:29:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:29:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:29:18] 2.13.2.0 6309 7300 140948 151666 3 33 32907264 40960000 19384 16776704 0 19587361 99.748 11573744 29101 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 11:29:18] CVMFS is ok
[2025-10-13 11:29:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:29:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:29:18] Further information can be found at the LHC@home message board.
[2025-10-13 11:29:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:29:18] Checking for apptainer binary...
[2025-10-13 11:29:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:29:18] Running /usr/bin/apptainer --version
[2025-10-13 11:29:18] apptainer version 1.4.3-1.el9
[2025-10-13 11:29:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:29:18] c-211-35-3.aglt2.org
[2025-10-13 11:29:18] apptainer works
[2025-10-13 11:29:18] Set ATHENA_PROC_NUMBER=9
[2025-10-13 11:29:18] Set ATHENA_CORE_NUMBER=9
[2025-10-13 11:29:18] Starting ATLAS job with PandaID=6839989498
[2025-10-13 11:29:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:09:46]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:09:46] 2025-10-13 17:08:57,098 | INFO     | transferring file log.46676269._078871.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839989498/log.46676269._078871.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 13:09:46] 2025-10-13 17:08:57,099 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839989498/log.46676269._078871.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078871.job
[2025-10-13 13:09:46] 2025-10-13 17:08:57,124 | INFO     | adding to output.list: log.46676269._078871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/ef/log.46676269._078871.job.log.tg
[2025-10-13 13:09:46] 2025-10-13 17:08:57,125 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 13:09:46] 2025-10-13 17:08:57,125 | INFO     | summary of transferred files:
[2025-10-13 13:09:46] 2025-10-13 17:08:57,125 | INFO     |  -- lfn=log.46676269._078871.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 13:09:46] 2025-10-13 17:08:57,126 | INFO     | stage-out finished correctly
[2025-10-13 13:09:46] 2025-10-13 17:08:58,119 | INFO     | monitor loop #432: job 0:6839989498 is in state 'finished'
[2025-10-13 13:09:46] 2025-10-13 17:08:58,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:09:46] 2025-10-13 17:08:58,639 | INFO     | time since job start (5968s) is within the limit (172800.0s)
[2025-10-13 13:09:46] 2025-10-13 17:09:00,108 | INFO     | PID=3856134 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 13:09:46] 2025-10-13 17:09:00,108 | INFO     | .. there are 21 such processes running
[2025-10-13 13:09:46] 2025-10-13 17:09:00,332 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 13:09:46] 2025-10-13 17:09:00,623 | INFO     | monitor loop #433: job 0:6839989498 is in state 'finished'
[2025-10-13 13:09:46] 2025-10-13 17:09:00,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:09:46] 2025-10-13 17:09:01,109 | INFO     | time since job start (5971s) is within the limit (172800.0s)
[2025-10-13 13:09:46] 2025-10-13 17:09:02,323 | INFO     | job 6839989498 has state=finished
[2025-10-13 13:09:46] 2025-10-13 17:09:02,324 | INFO     | preparing for final server update for job 6839989498 in state='finished'
[2025-10-13 13:09:46] 2025-10-13 17:09:02,404 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 13:09:46] 2025-10-13 17:09:02,405 | INFO     | this job has now completed (state=finished)
[2025-10-13 13:09:46] 2025-10-13 17:09:02,405 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 13:09:46] 2025-10-13 17:09:02,406 | INFO     | log transfer has been attempted: DONE
[2025-10-13 13:09:46] 2025-10-13 17:09:02,406 | INFO     | job 6839989498 has finished - writing final server update
[2025-10-13 13:09:46] 2025-10-13 17:09:02,406 | INFO     | total number of processed events: 400 (read)
[2025-10-13 13:09:46] 2025-10-13 17:09:02,407 | INFO     | executing command: lscpu
[2025-10-13 13:09:46] 2025-10-13 17:09:02,481 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 13:09:46] 2025-10-13 17:09:03,116 | INFO     | time since job start (5973s) is within the limit (172800.0s)
[2025-10-13 13:09:46] 2025-10-13 17:09:03,128 | INFO     | monitor loop #434: job 0:6839989498 is in state 'finished'
[2025-10-13 13:09:46] 2025-10-13 17:09:03,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:09:46] 2025-10-13 17:09:05,122 | INFO     | time since job start (5975s) is within the limit (172800.0s)
[2025-10-13 13:09:46] 2025-10-13 17:09:05,631 | INFO     | monitor loop #435: job 0:6839989498 is in state 'finished'
[2025-10-13 13:09:46] 2025-10-13 17:09:05,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:09:46] 2025-10-13 17:09:07,128 | INFO     | time since job start (5977s) is within the limit (172800.0s)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,137 | INFO     | monitor loop #436: job 0:6839989498 is in state 'finished'
[2025-10-13 13:09:46] 2025-10-13 17:09:08,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,432 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 13:09:46] 2025-10-13 17:09:08,446 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2651.1652916666667
[2025-10-13 13:09:46] 2025-10-13 17:09:08,465 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839989498/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,467 | INFO     | extracted standard info from prmon json
[2025-10-13 13:09:46] 2025-10-13 17:09:08,467 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 13:09:46] 2025-10-13 17:09:08,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 13:09:46] 2025-10-13 17:09:08,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 13:09:46] 2025-10-13 17:09:08,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:09:46] 2025-10-13 17:09:08,471 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:09:46] 2025-10-13 17:09:08,472 | INFO     | sum of square deviations: 233644152.98901114
[2025-10-13 13:09:46] 2025-10-13 17:09:08,472 | INFO     | sum of deviations: -24364922045.560448
[2025-10-13 13:09:46] 2025-10-13 17:09:08,473 | INFO     | mean x: 1760372445.010989
[2025-10-13 13:09:46] 2025-10-13 17:09:08,473 | INFO     | mean y: 2788690.5604395606
[2025-10-13 13:09:46] 2025-10-13 17:09:08,473 | INFO     | -- intersect: 183578268090.04993
[2025-10-13 13:09:46] 2025-10-13 17:09:08,473 | INFO     | intersect: 183578268090.04993
[2025-10-13 13:09:46] 2025-10-13 17:09:08,473 | INFO     | chi2: 0.1466507048876531
[2025-10-13 13:09:46] 2025-10-13 17:09:08,474 | INFO     | -- intersect: 183578268090.04993
[2025-10-13 13:09:46] 2025-10-13 17:09:08,474 | INFO     | current memory leak: -104.28 B/s (using 91 data points, chi2=0.15)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | could have reported an average CPU frequency of 2675 MHz (7 samples)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | ..............................
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | . Timing measurements:
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | . get job = 0 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | . initial setup = 2 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | . payload setup = 5 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | . stage-in = 0 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,475 | INFO     | . payload execution = 5941 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,476 | INFO     | . stage-out = 0 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,476 | INFO     | . log creation = 0 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,476 | INFO     | ..............................
[2025-10-13 13:09:46] 2025-10-13 17:09:08,605 | INFO     | 
[2025-10-13 13:09:46] 2025-10-13 17:09:08,605 | INFO     | job summary report
[2025-10-13 13:09:46] 2025-10-13 17:09:08,605 | INFO     | --------------------------------------------------
[2025-10-13 13:09:46] 2025-10-13 17:09:08,605 | INFO     | PanDA job id: 6839989498
[2025-10-13 13:09:46] 2025-10-13 17:09:08,605 | INFO     | task id: 46676269
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | errors: (none)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | pilot state: finished 
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | transexitcode: 0
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | exeerrorcode: 0
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | exeerrordiag: 
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | exitcode: 0
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | exitmsg: OK
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | cpuconsumptiontime: 46713 s
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | nevents: 400
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | neventsw: 0
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | pid: 3870455
[2025-10-13 13:09:46] 2025-10-13 17:09:08,606 | INFO     | pgrp: 3870455
[2025-10-13 13:09:46] 2025-10-13 17:09:08,607 | INFO     | corecount: 9
[2025-10-13 13:09:46] 2025-10-13 17:09:08,607 | INFO     | event service: False
[2025-10-13 13:09:46] 2025-10-13 17:09:08,607 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 12: 2349203, 5950: 2376049, 5952: 2385047, 5955: 2385231, 5964: 2385425}
[2025-10-13 13:09:46] 2025-10-13 17:09:08,607 | INFO     | --------------------------------------------------
[2025-10-13 13:09:46] 2025-10-13 17:09:08,607 | INFO     | 
[2025-10-13 13:09:46] 2025-10-13 17:09:08,607 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 13:09:46] 2025-10-13 17:09:08,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,638 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,638 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,638 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:09:46] 2025-10-13 17:09:08,640 | INFO     | job 6839989498 has completed (purged errors)
[2025-10-13 13:09:46] 2025-10-13 17:09:08,640 | INFO     | overall cleanup function is called
[2025-10-13 13:09:46] 2025-10-13 17:09:09,649 | INFO     | --- collectZombieJob: --- 10, [3870455]
[2025-10-13 13:09:46] 2025-10-13 17:09:09,649 | INFO     | zombie collector waiting for pid 3870455
[2025-10-13 13:09:46] 2025-10-13 17:09:09,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:09:46] 2025-10-13 17:09:09,650 | INFO     | collected zombie processes
[2025-10-13 13:09:46] 2025-10-13 17:09:09,650 | INFO     | will attempt to kill all subprocesses of pid=3870455
[2025-10-13 13:09:46] 2025-10-13 17:09:09,944 | INFO     | process IDs to be killed: [3870455] (in reverse order)
[2025-10-13 13:09:46] 2025-10-13 17:09:10,080 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:09:46] 2025-10-13 17:09:10,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:09:46] 2025-10-13 17:09:10,096 | INFO     | did not find any defunct processes belonging to 3870455
[2025-10-13 13:09:46] 2025-10-13 17:09:10,110 | INFO     | did not find any defunct processes belonging to 3870455
[2025-10-13 13:09:46] 2025-10-13 17:09:10,110 | INFO     | ready for new job
[2025-10-13 13:09:46] 2025-10-13 17:09:10,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:09:46] 2025-10-13 17:09:10,112 | INFO     | ***************************************
[2025-10-13 13:09:46] 2025-10-13 17:09:10,113 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:09:46] 2025-10-13 17:09:10,113 | INFO     | ***************************************
[2025-10-13 13:09:46] 2025-10-13 17:09:10,113 | INFO     | 
[2025-10-13 13:09:46] 2025-10-13 17:09:10,117 | INFO     | architecture information:
[2025-10-13 13:09:46] 2025-10-13 17:09:10,118 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:09:46] 2025-10-13 17:09:10,138 | INFO     | cat /etc/os-release:
[2025-10-13 13:09:46] NAME="CentOS Linux"
[2025-10-13 13:09:46] VERSION="7 (Core)"
[2025-10-13 13:09:46] ID="centos"
[2025-10-13 13:09:46] ID_LIKE="rhel fedora"
[2025-10-13 13:09:46] VERSION_ID="7"
[2025-10-13 13:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:09:46] ANSI_COLOR="0;31"
[2025-10-13 13:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:09:46] HOME_URL="https://www.centos.org/"
[2025-10-13 13:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:09:46] 
[2025-10-13 13:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:09:46] 
[2025-10-13 13:09:46] 2025-10-13 17:09:10,139 | INFO     | ***************************************
[2025-10-13 13:09:46] 2025-10-13 17:09:10,641 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 13:09:46] 2025-10-13 17:09:10,671 | INFO     | sufficient remaining disk space (129381695488 B)
[2025-10-13 13:09:46] 2025-10-13 17:09:10,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:09:46] 2025-10-13 17:09:10,672 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:09:46] 2025-10-13 17:09:10,672 | INFO     | update_server=False
[2025-10-13 13:09:46] 2025-10-13 17:09:10,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:09:46] 2025-10-13 17:09:10,673 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:09:46] 2025-10-13 17:09:10,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:09:46] 2025-10-13 17:09:11,436 | INFO     | all payload control threads have been joined
[2025-10-13 13:09:46] 2025-10-13 17:09:11,615 | INFO     | all data control threads have been joined
[2025-10-13 13:09:46] 2025-10-13 17:09:11,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:09:46] 2025-10-13 17:09:11,647 | INFO     | aborting loop
[2025-10-13 13:09:46] 2025-10-13 17:09:11,678 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:11,735 | INFO     | all job control threads have been joined
[2025-10-13 13:09:46] 2025-10-13 17:09:11,879 | INFO     | [job] validate thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,230 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,237 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,374 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,441 | INFO     | [payload] control thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,620 | INFO     | [data] control thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,651 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,681 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,741 | INFO     | [job] control thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,811 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:12,963 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:13,035 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:13,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:09:46] 2025-10-13 17:09:14,620 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:14,957 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:20,763 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:09:46] 2025-10-13 17:09:21,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:09:46] 2025-10-13 17:09:39,612 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:09:46] 2025-10-13 17:09:40,703 | INFO     | PID=3856134 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 13:09:46] 2025-10-13 17:09:40,703 | INFO     | .. there are 21 such processes running
[2025-10-13 13:09:46] 2025-10-13 17:09:40,705 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:09:46] 2025-10-13 17:09:40,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:09:46] 2025-10-13 17:09:40,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:09:46] 2025-10-13 17:09:40,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830623262528)>', '<ExcThread(monitor, started 139829748680448)>']
[2025-10-13 13:09:46] 2025-10-13 17:09:41,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:09:46] 2025-10-13 17:09:41,711 | INFO     | [monitor] control thread has ended
[2025-10-13 13:09:46] 2025-10-13 17:09:45,992 | INFO     | all workflow threads have been joined
[2025-10-13 13:09:46] 2025-10-13 17:09:45,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:09:46] 2025-10-13 17:09:45,993 | INFO     | traces error code: 0
[2025-10-13 13:09:46] 2025-10-13 17:09:45,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:09:46] 2025-10-13 17:09:46,271 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:09:46] 2025-10-13 17:09:46,274 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:09:46] 2025-10-13 17:09:46,278 [wrapper] pilotpid: 3856134
[2025-10-13 13:09:46] 2025-10-13 17:09:46,285 [wrapper] Pilot exit status: 0
[2025-10-13 13:09:46] 2025-10-13 17:09:46,299 [wrapper] pandaids: 6839989498
[2025-10-13 13:09:46] 2025-10-13 17:09:46,371 [wrapper] cleanup supervisor_pilot 4048268 3856135
[2025-10-13 13:09:46] 2025-10-13 17:09:46,375 [wrapper] Test setup, not cleaning
[2025-10-13 13:09:46] 2025-10-13 17:09:46,379 [wrapper] apfmon messages muted
[2025-10-13 13:09:46] 2025-10-13 17:09:46,382 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:09:46] 2025-10-13 17:09:46,386 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:09:46]  *** Error codes and diagnostics ***
[2025-10-13 13:09:46]     "exeErrorCode": 0,
[2025-10-13 13:09:46]     "exeErrorDiag": "",
[2025-10-13 13:09:46]     "pilotErrorCode": 0,
[2025-10-13 13:09:46]     "pilotErrorDiag": "",
[2025-10-13 13:09:46]  *** Listing of results directory ***
[2025-10-13 13:09:46] total 414916
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-13 13:09:46] -rwx------. 1 boincer umatlas     36292 Oct 12 08:57 runpilot2-wrapper.sh
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:57 queuedata.json
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas       100 Oct 13 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:09:46] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 11:29 run_atlas
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas       105 Oct 13 11:29 job.xml
[2025-10-13 13:09:46] -rw-r--r--. 2 boincer umatlas 220252800 Oct 13 11:29 EVNT.46676267._003834.pool.root.1
[2025-10-13 13:09:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 11:29 start_atlas.sh
[2025-10-13 13:09:46] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 11:29 shared
[2025-10-13 13:09:46] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 11:29 input.tar.gz
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas         0 Oct 13 11:29 boinc_lockfile
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 11:29 pandaJob.out
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas    972783 Oct 13 11:29 agis_schedconf.cvmfs.json
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas   1560580 Oct 13 11:29 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:09:46] drwx------. 5 boincer umatlas      4096 Oct 13 11:29 pilot3
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas      6857 Oct 13 13:03 init_data.xml
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas 198272386 Oct 13 13:08 HITS.46676269._078871.pool.root.1
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas       529 Oct 13 13:08 boinc_task_state.xml
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas      1043 Oct 13 13:08 memory_monitor_summary.json
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas    366947 Oct 13 13:08 log.46676269._078871.job.log.tgz.1
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas      7835 Oct 13 13:09 heartbeat.json
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 13:09 boinc_mmap_file
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas        27 Oct 13 13:09 wrapper_checkpoint.txt
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas        95 Oct 13 13:09 pilot_heartbeat.json
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas      4897 Oct 13 13:09 pilotlog.txt
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas    858048 Oct 13 13:09 log.46676269._078871.job.log.1
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas       357 Oct 13 13:09 output.list
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas       620 Oct 13 13:09 runtime_log
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas   1239040 Oct 13 13:09 result.tar.gz
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas      8713 Oct 13 13:09 runtime_log.err
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas       656 Oct 13 13:09 KhwKDm4oAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhujNDmHjfjhm.diag
[2025-10-13 13:09:46] -rw-r--r--. 1 boincer umatlas     22557 Oct 13 13:09 stderr.txt
[2025-10-13 13:09:46] HITS file was successfully produced:
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas 198272386 Oct 13 13:08 shared/HITS.pool.root.1
[2025-10-13 13:09:46]  *** Contents of shared directory: ***
[2025-10-13 13:09:46] total 410516
[2025-10-13 13:09:46] -rw-r--r--. 2 boincer umatlas 220252800 Oct 13 11:29 ATLAS.root_0
[2025-10-13 13:09:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 11:29 start_atlas.sh
[2025-10-13 13:09:46] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 11:29 input.tar.gz
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas 198272386 Oct 13 13:08 HITS.pool.root.1
[2025-10-13 13:09:46] -rw-------. 1 boincer umatlas   1239040 Oct 13 13:09 result.tar.gz
13:09:47 (3851987): run_atlas exited; CPU time 46882.506869
13:09:47 (3851987): called boinc_finish(0)

</stderr_txt>
]]>

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