Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:22:20 (22882): wrapper (7.7.26015): starting
11:22:20 (22882): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 11:22:20] Arguments: --nthreads 8
[2025-10-13 11:22:20] Threads: 8
[2025-10-13 11:22:20] Checking for CVMFS
[2025-10-13 11:22:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 11:22:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 11:22:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 11:22:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 11:22:20] 2.11.2.0 3129 200252 83072 151666 0 1 12187738 20275201 1 130560 1 71322629 99.977 9471653 25259 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 11:22:20] CVMFS is ok
[2025-10-13 11:22:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 11:22:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 11:22:20] Further information can be found at the LHC@home message board.
[2025-10-13 11:22:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 11:22:20] Checking for apptainer binary...
[2025-10-13 11:22:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 11:22:20] Running /usr/bin/apptainer --version
[2025-10-13 11:22:20] apptainer version 1.3.2-1.el7
[2025-10-13 11:22:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 11:22:21] c-204-31.aglt2.org
[2025-10-13 11:22:21] apptainer works
[2025-10-13 11:22:21] Set ATHENA_PROC_NUMBER=8
[2025-10-13 11:22:21] Set ATHENA_CORE_NUMBER=8
[2025-10-13 11:22:21] Starting ATLAS job with PandaID=6843089917
[2025-10-13 11:22:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 13:38:58]  *** The last 200 lines of the pilot log: ***
[2025-10-13 13:38:58] 2025-10-13 17:38:19,779 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 13:38:58] 2025-10-13 17:38:19,782 | INFO     | fitting pss+swap vs Time
[2025-10-13 13:38:58] 2025-10-13 17:38:19,782 | INFO     | sum of square deviations: 729472282.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,783 | INFO     | sum of deviations: -3479997966.9999995
[2025-10-13 13:38:58] 2025-10-13 17:38:19,783 | INFO     | mean x: 1760373019.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,783 | INFO     | mean y: 2565427.8045112784
[2025-10-13 13:38:58] 2025-10-13 17:38:19,783 | INFO     | -- intersect: 8400546651.279773
[2025-10-13 13:38:58] 2025-10-13 17:38:19,783 | INFO     | intersect: 8400546651.279773
[2025-10-13 13:38:58] 2025-10-13 17:38:19,784 | INFO     | chi2: 1.7826625842342698
[2025-10-13 13:38:58] 2025-10-13 17:38:19,784 | INFO     | sum of square deviations: 650252192.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,784 | INFO     | sum of deviations: -2605888585.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,785 | INFO     | mean x: 1760372866.5
[2025-10-13 13:38:58] 2025-10-13 17:38:19,785 | INFO     | mean y: 2567111.28125
[2025-10-13 13:38:58] 2025-10-13 17:38:19,785 | INFO     | -- intersect: 7057269293.901619
[2025-10-13 13:38:58] 2025-10-13 17:38:19,785 | INFO     | intersect: 7057269293.901619
[2025-10-13 13:38:58] 2025-10-13 17:38:19,785 | INFO     | chi2: 1.7844967003908132
[2025-10-13 13:38:58] 2025-10-13 17:38:19,785 | INFO     | current chi2=1.7844967003908132 (change=-0.10288633265566731 %)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,786 | INFO     | right removable region: 127
[2025-10-13 13:38:58] 2025-10-13 17:38:19,786 | INFO     | sum of square deviations: 650252192.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,786 | INFO     | sum of deviations: -25846157469.5
[2025-10-13 13:38:58] 2025-10-13 17:38:19,786 | INFO     | mean x: 1760373171.5
[2025-10-13 13:38:58] 2025-10-13 17:38:19,787 | INFO     | mean y: 2607854.1796875
[2025-10-13 13:38:58] 2025-10-13 17:38:19,787 | INFO     | -- intersect: 69973740217.04012
[2025-10-13 13:38:58] 2025-10-13 17:38:19,787 | INFO     | intersect: 69973740217.04012
[2025-10-13 13:38:58] 2025-10-13 17:38:19,787 | INFO     | chi2: 0.16349114446856625
[2025-10-13 13:38:58] 2025-10-13 17:38:19,787 | INFO     | current chi2=0.16349114446856625 (change=90.82882280054176 %)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,788 | INFO     | sum of square deviations: 576985702.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,788 | INFO     | sum of deviations: -27247199949.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,788 | INFO     | mean x: 1760373324.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,788 | INFO     | mean y: 2610660.56097561
[2025-10-13 13:38:58] 2025-10-13 17:38:19,788 | INFO     | -- intersect: 83133342977.93434
[2025-10-13 13:38:58] 2025-10-13 17:38:19,789 | INFO     | intersect: 83133342977.93434
[2025-10-13 13:38:58] 2025-10-13 17:38:19,789 | INFO     | chi2: 0.11313376298792507
[2025-10-13 13:38:58] 2025-10-13 17:38:19,789 | INFO     | current chi2=0.11313376298792507 (change=30.80128996853599 %)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,789 | INFO     | sum of square deviations: 509440249.5
[2025-10-13 13:38:58] 2025-10-13 17:38:19,790 | INFO     | sum of deviations: -24753151478.5
[2025-10-13 13:38:58] 2025-10-13 17:38:19,790 | INFO     | mean x: 1760373476.5
[2025-10-13 13:38:58] 2025-10-13 17:38:19,790 | INFO     | mean y: 2605019.245762712
[2025-10-13 13:38:58] 2025-10-13 17:38:19,790 | INFO     | -- intersect: 85537250868.89247
[2025-10-13 13:38:58] 2025-10-13 17:38:19,790 | INFO     | intersect: 85537250868.89247
[2025-10-13 13:38:58] 2025-10-13 17:38:19,791 | INFO     | chi2: 0.11212612765807388
[2025-10-13 13:38:58] 2025-10-13 17:38:19,791 | INFO     | current chi2=0.11212612765807388 (change=0.8906583704448521 %)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,791 | INFO     | left removable region: 30
[2025-10-13 13:38:58] 2025-10-13 17:38:19,791 | INFO     | sum of square deviations: 282974608.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | sum of deviations: -13975963882.000004
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | mean x: 1760373751.0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | mean y: 2582113.9896907215
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | -- intersect: 86946496045.6484
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | intersect: 86946496045.6484
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | chi2: 0.10118291183185509
[2025-10-13 13:38:58] 2025-10-13 17:38:19,792 | INFO     | -- intersect: 86946496045.6484
[2025-10-13 13:38:58] 2025-10-13 17:38:19,793 | INFO     | current memory leak: -49.39 B/s (using 97 data points, chi2=0.10)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,793 | INFO     | could have reported an average CPU frequency of 2008 MHz (8 samples)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,793 | INFO     | ..............................
[2025-10-13 13:38:58] 2025-10-13 17:38:19,793 | INFO     | . Timing measurements:
[2025-10-13 13:38:58] 2025-10-13 17:38:19,793 | INFO     | . get job = 0 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,793 | INFO     | . initial setup = 2 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,794 | INFO     | . payload setup = 8 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,794 | INFO     | . stage-in = 0 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,794 | INFO     | . payload execution = 8100 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,794 | INFO     | . stage-out = 0 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,794 | INFO     | . log creation = 0 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,794 | INFO     | ..............................
[2025-10-13 13:38:58] 2025-10-13 17:38:19,886 | INFO     | 
[2025-10-13 13:38:58] 2025-10-13 17:38:19,886 | INFO     | job summary report
[2025-10-13 13:38:58] 2025-10-13 17:38:19,886 | INFO     | --------------------------------------------------
[2025-10-13 13:38:58] 2025-10-13 17:38:19,886 | INFO     | PanDA job id: 6843089917
[2025-10-13 13:38:58] 2025-10-13 17:38:19,886 | INFO     | task id: 46676269
[2025-10-13 13:38:58] 2025-10-13 17:38:19,887 | INFO     | errors: (none)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 13:38:58] 2025-10-13 17:38:19,887 | INFO     | pilot state: finished 
[2025-10-13 13:38:58] 2025-10-13 17:38:19,887 | INFO     | transexitcode: 0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,887 | INFO     | exeerrorcode: 0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,887 | INFO     | exeerrordiag: 
[2025-10-13 13:38:58] 2025-10-13 17:38:19,888 | INFO     | exitcode: 0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,888 | INFO     | exitmsg: OK
[2025-10-13 13:38:58] 2025-10-13 17:38:19,888 | INFO     | cpuconsumptiontime: 59737 s
[2025-10-13 13:38:58] 2025-10-13 17:38:19,888 | INFO     | nevents: 400
[2025-10-13 13:38:58] 2025-10-13 17:38:19,888 | INFO     | neventsw: 0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,888 | INFO     | pid: 529
[2025-10-13 13:38:58] 2025-10-13 17:38:19,889 | INFO     | pgrp: 529
[2025-10-13 13:38:58] 2025-10-13 17:38:19,889 | INFO     | corecount: 8
[2025-10-13 13:38:58] 2025-10-13 17:38:19,889 | INFO     | event service: False
[2025-10-13 13:38:58] 2025-10-13 17:38:19,889 | INFO     | sizes: {0: 2348585, 1: 2348784, 7: 2349046, 12: 2349074, 8112: 2376842, 8113: 2386024, 8121: 2386162}
[2025-10-13 13:38:58] 2025-10-13 17:38:19,889 | INFO     | --------------------------------------------------
[2025-10-13 13:38:58] 2025-10-13 17:38:19,889 | INFO     | 
[2025-10-13 13:38:58] 2025-10-13 17:38:19,890 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 13:38:58] 2025-10-13 17:38:19,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,920 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,921 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,921 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,921 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 13:38:58] 2025-10-13 17:38:19,924 | INFO     | job 6843089917 has completed (purged errors)
[2025-10-13 13:38:58] 2025-10-13 17:38:19,924 | INFO     | overall cleanup function is called
[2025-10-13 13:38:58] 2025-10-13 17:38:20,930 | INFO     | --- collectZombieJob: --- 10, [529]
[2025-10-13 13:38:58] 2025-10-13 17:38:20,930 | INFO     | zombie collector waiting for pid 529
[2025-10-13 13:38:58] 2025-10-13 17:38:20,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 13:38:58] 2025-10-13 17:38:20,931 | INFO     | collected zombie processes
[2025-10-13 13:38:58] 2025-10-13 17:38:20,931 | INFO     | will attempt to kill all subprocesses of pid=529
[2025-10-13 13:38:58] 2025-10-13 17:38:21,024 | INFO     | process IDs to be killed: [529] (in reverse order)
[2025-10-13 13:38:58] 2025-10-13 17:38:21,085 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 13:38:58] 2025-10-13 17:38:21,085 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 13:38:58] 2025-10-13 17:38:21,090 | INFO     | did not find any defunct processes belonging to 529
[2025-10-13 13:38:58] 2025-10-13 17:38:21,093 | INFO     | did not find any defunct processes belonging to 529
[2025-10-13 13:38:58] 2025-10-13 17:38:21,094 | INFO     | ready for new job
[2025-10-13 13:38:58] 2025-10-13 17:38:21,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 13:38:58] 2025-10-13 17:38:21,095 | INFO     | ***************************************
[2025-10-13 13:38:58] 2025-10-13 17:38:21,096 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 13:38:58] 2025-10-13 17:38:21,096 | INFO     | ***************************************
[2025-10-13 13:38:58] 2025-10-13 17:38:21,096 | INFO     | 
[2025-10-13 13:38:58] 2025-10-13 17:38:21,096 | INFO     | architecture information:
[2025-10-13 13:38:58] 2025-10-13 17:38:21,097 | INFO     | executing command: cat /etc/os-release
[2025-10-13 13:38:58] 2025-10-13 17:38:21,116 | INFO     | cat /etc/os-release:
[2025-10-13 13:38:58] NAME="CentOS Linux"
[2025-10-13 13:38:58] VERSION="7 (Core)"
[2025-10-13 13:38:58] ID="centos"
[2025-10-13 13:38:58] ID_LIKE="rhel fedora"
[2025-10-13 13:38:58] VERSION_ID="7"
[2025-10-13 13:38:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 13:38:58] ANSI_COLOR="0;31"
[2025-10-13 13:38:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 13:38:58] HOME_URL="https://www.centos.org/"
[2025-10-13 13:38:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 13:38:58] 
[2025-10-13 13:38:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 13:38:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 13:38:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 13:38:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 13:38:58] 
[2025-10-13 13:38:58] 2025-10-13 17:38:21,116 | INFO     | ***************************************
[2025-10-13 13:38:58] 2025-10-13 17:38:21,619 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 13:38:58] 2025-10-13 17:38:21,641 | INFO     | sufficient remaining disk space (18546163712 B)
[2025-10-13 13:38:58] 2025-10-13 17:38:21,647 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 13:38:58] 2025-10-13 17:38:21,648 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 13:38:58] 2025-10-13 17:38:21,648 | INFO     | update_server=False
[2025-10-13 13:38:58] 2025-10-13 17:38:21,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 13:38:58] 2025-10-13 17:38:21,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:38:58] 2025-10-13 17:38:21,689 | INFO     | all payload control threads have been joined
[2025-10-13 13:38:58] 2025-10-13 17:38:22,005 | INFO     | all job control threads have been joined
[2025-10-13 13:38:58] 2025-10-13 17:38:22,085 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 13:38:58] 2025-10-13 17:38:22,085 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 13:38:58] 2025-10-13 17:38:22,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 13:38:58] 2025-10-13 17:38:22,086 | INFO     | will abort loop
[2025-10-13 13:38:58] 2025-10-13 17:38:22,211 | INFO     | all data control threads have been joined
[2025-10-13 13:38:58] 2025-10-13 17:38:22,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 13:38:58] 2025-10-13 17:38:22,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 13:38:58] 2025-10-13 17:38:22,654 | INFO     | [job] retrieve thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:22,654 | INFO     | [job] queue monitor thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:22,695 | INFO     | [payload] control thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:22,790 | INFO     | [payload] failed_post thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,010 | INFO     | [job] control thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,073 | INFO     | [payload] validate_post thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,089 | INFO     | [job] job monitor thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,186 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,213 | INFO     | [data] control thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,317 | INFO     | [job] validate thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,781 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,909 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:23,980 | INFO     | [data] copytool_in thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:24,389 | INFO     | [data] copytool_out thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:26,465 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:32,253 | INFO     | job.realtimelogging is not enabled
[2025-10-13 13:38:58] 2025-10-13 17:38:33,257 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 13:38:58] 2025-10-13 17:38:51,839 | INFO     | PID=26584 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 13:38:58] 2025-10-13 17:38:51,839 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 13:38:58] 2025-10-13 17:38:51,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 13:38:58] 2025-10-13 17:38:51,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 13:38:58] 2025-10-13 17:38:53,313 | INFO     | [monitor] cgroup control has ended
[2025-10-13 13:38:58] 2025-10-13 17:38:53,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191692101440)>', '<ExcThread(monitor, started 140190920193792)>']
[2025-10-13 13:38:58] 2025-10-13 17:38:53,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 13:38:58] 2025-10-13 17:38:53,849 | INFO     | [monitor] control thread has ended
[2025-10-13 13:38:58] 2025-10-13 17:38:58,423 | INFO     | all workflow threads have been joined
[2025-10-13 13:38:58] 2025-10-13 17:38:58,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 13:38:58] 2025-10-13 17:38:58,424 | INFO     | traces error code: 0
[2025-10-13 13:38:58] 2025-10-13 17:38:58,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 13:38:58] 2025-10-13 17:38:58,536 [wrapper] ==== pilot stdout END ====
[2025-10-13 13:38:58] 2025-10-13 17:38:58,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 13:38:58] 2025-10-13 17:38:58,546 [wrapper] pilotpid: 26584
[2025-10-13 13:38:58] 2025-10-13 17:38:58,551 [wrapper] Pilot exit status: 0
[2025-10-13 13:38:58] 2025-10-13 17:38:58,571 [wrapper] pandaids: 6843089917
[2025-10-13 13:38:58] 2025-10-13 17:38:58,620 [wrapper] cleanup supervisor_pilot  2756 26585
[2025-10-13 13:38:58] 2025-10-13 17:38:58,625 [wrapper] Test setup, not cleaning
[2025-10-13 13:38:58] 2025-10-13 17:38:58,630 [wrapper] apfmon messages muted
[2025-10-13 13:38:58] 2025-10-13 17:38:58,636 [wrapper] ==== wrapper stdout END ====
[2025-10-13 13:38:58] 2025-10-13 17:38:58,641 [wrapper] ==== wrapper stderr END ====
[2025-10-13 13:38:58]  *** Error codes and diagnostics ***
[2025-10-13 13:38:58]     "exeErrorCode": 0,
[2025-10-13 13:38:58]     "exeErrorDiag": "",
[2025-10-13 13:38:58]     "pilotErrorCode": 0,
[2025-10-13 13:38:58]     "pilotErrorDiag": "",
[2025-10-13 13:38:58]  *** Listing of results directory ***
[2025-10-13 13:38:58] total 418928
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 11:15 pilot3.tar.gz
[2025-10-13 13:38:58] -rwx------ 1 boincer umatlas     36292 Oct 13 11:21 runpilot2-wrapper.sh
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 11:21 queuedata.json
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas       100 Oct 13 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 13:38:58] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 11:22 run_atlas
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas       105 Oct 13 11:22 job.xml
[2025-10-13 13:38:58] -rw-r--r-- 2 boincer umatlas 220030848 Oct 13 11:22 EVNT.46676267._002318.pool.root.1
[2025-10-13 13:38:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 11:22 start_atlas.sh
[2025-10-13 13:38:58] drwxrwx--x 2 boincer umatlas      4096 Oct 13 11:22 shared
[2025-10-13 13:38:58] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 11:22 input.tar.gz
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas         0 Oct 13 11:22 boinc_lockfile
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 11:22 pandaJob.out
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas    972783 Oct 13 11:22 agis_schedconf.cvmfs.json
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas   1560580 Oct 13 11:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 13:38:58] drwx------ 5 boincer umatlas      4096 Oct 13 11:22 pilot3
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas      5909 Oct 13 13:29 init_data.xml
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas 201998550 Oct 13 13:37 HITS.46676269._096888.pool.root.1
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas      1049 Oct 13 13:38 memory_monitor_summary.json
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas       529 Oct 13 13:38 boinc_task_state.xml
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas    386728 Oct 13 13:38 log.46676269._096888.job.log.tgz.1
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas      7849 Oct 13 13:38 heartbeat.json
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas        27 Oct 13 13:38 wrapper_checkpoint.txt
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 13:38 boinc_mmap_file
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas        95 Oct 13 13:38 pilot_heartbeat.json
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas      5004 Oct 13 13:38 pilotlog.txt
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas   1137413 Oct 13 13:38 log.46676269._096888.job.log.1
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas       357 Oct 13 13:38 output.list
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas       620 Oct 13 13:38 runtime_log
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas   1546240 Oct 13 13:38 result.tar.gz
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 13:38 runtime_log.err
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas       660 Oct 13 13:38 DJhNDm4XZS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlnmNDmK2JMrn.diag
[2025-10-13 13:38:58] -rw-r--r-- 1 boincer umatlas     20837 Oct 13 13:38 stderr.txt
[2025-10-13 13:38:58] HITS file was successfully produced:
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas 201998550 Oct 13 13:37 shared/HITS.pool.root.1
[2025-10-13 13:38:58]  *** Contents of shared directory: ***
[2025-10-13 13:38:58] total 414236
[2025-10-13 13:38:58] -rw-r--r-- 2 boincer umatlas 220030848 Oct 13 11:22 ATLAS.root_0
[2025-10-13 13:38:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 11:22 start_atlas.sh
[2025-10-13 13:38:58] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 11:22 input.tar.gz
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas 201998550 Oct 13 13:37 HITS.pool.root.1
[2025-10-13 13:38:58] -rw------- 1 boincer umatlas   1546240 Oct 13 13:38 result.tar.gz
13:39:00 (22882): run_atlas exited; CPU time 59668.204343
13:39:00 (22882): called boinc_finish(0)

</stderr_txt>
]]>

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