Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:44 (8066): wrapper (7.7.26015): starting
10:30:44 (8066): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 10:30:44] Arguments: --nthreads 12
[2025-10-13 10:30:44] Threads: 12
[2025-10-13 10:30:44] Checking for CVMFS
[2025-10-13 10:30:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:30:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:30:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:30:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:30:44] 2.11.2.0 2949 224444 96448 151664 0 1 10767501 20275200 1 130560 1 109891781 99.984 12417047 12122 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 10:30:44] CVMFS is ok
[2025-10-13 10:30:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:30:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:30:44] Further information can be found at the LHC@home message board.
[2025-10-13 10:30:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:30:44] Checking for apptainer binary...
[2025-10-13 10:30:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:30:44] Running /usr/bin/apptainer --version
[2025-10-13 10:30:45] apptainer version 1.3.2-1.el7
[2025-10-13 10:30:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:30:46] c-205-13.aglt2.org
[2025-10-13 10:30:46] apptainer works
[2025-10-13 10:30:46] Set ATHENA_PROC_NUMBER=12
[2025-10-13 10:30:46] Set ATHENA_CORE_NUMBER=12
[2025-10-13 10:30:46] Starting ATLAS job with PandaID=6841124734
[2025-10-13 10:30:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:43:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:43:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/d9/log.46676269._094601.job.log.tgz.1
[2025-10-13 11:43:21]  workdir=None
[2025-10-13 11:43:21] ]
[2025-10-13 11:43:21] 2025-10-13 15:42:40,644 | INFO     | transferring file log.46676269._094601.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841124734/log.46676269._094601.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 11:43:21] 2025-10-13 15:42:40,645 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841124734/log.46676269._094601.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._094601.job
[2025-10-13 11:43:21] 2025-10-13 15:42:40,667 | INFO     | adding to output.list: log.46676269._094601.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/d9/log.46676269._094601.job.log.tg
[2025-10-13 11:43:21] 2025-10-13 15:42:40,668 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 11:43:21] 2025-10-13 15:42:40,668 | INFO     | summary of transferred files:
[2025-10-13 11:43:21] 2025-10-13 15:42:40,669 | INFO     |  -- lfn=log.46676269._094601.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 11:43:21] 2025-10-13 15:42:40,669 | INFO     | stage-out finished correctly
[2025-10-13 11:43:21] 2025-10-13 15:42:41,840 | INFO     | monitor loop #321: job 0:6841124734 is in state 'finished'
[2025-10-13 11:43:21] 2025-10-13 15:42:41,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:43:21] 2025-10-13 15:42:41,950 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 11:43:21] 2025-10-13 15:42:42,172 | INFO     | time since job start (4301s) is within the limit (172800.0s)
[2025-10-13 11:43:21] 2025-10-13 15:42:43,919 | INFO     | job 6841124734 has state=finished
[2025-10-13 11:43:21] 2025-10-13 15:42:43,919 | INFO     | preparing for final server update for job 6841124734 in state='finished'
[2025-10-13 11:43:21] 2025-10-13 15:42:43,920 | INFO     | this job has now completed (state=finished)
[2025-10-13 11:43:21] 2025-10-13 15:42:43,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 11:43:21] 2025-10-13 15:42:43,920 | INFO     | log transfer has been attempted: DONE
[2025-10-13 11:43:21] 2025-10-13 15:42:43,921 | INFO     | job 6841124734 has finished - writing final server update
[2025-10-13 11:43:21] 2025-10-13 15:42:43,921 | INFO     | total number of processed events: 400 (read)
[2025-10-13 11:43:21] 2025-10-13 15:42:43,922 | INFO     | executing command: lscpu
[2025-10-13 11:43:21] 2025-10-13 15:42:43,947 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 11:43:21] 2025-10-13 15:42:44,178 | INFO     | time since job start (4303s) is within the limit (172800.0s)
[2025-10-13 11:43:21] 2025-10-13 15:42:44,343 | INFO     | monitor loop #322: job 0:6841124734 is in state 'finished'
[2025-10-13 11:43:21] 2025-10-13 15:42:44,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:43:21] 2025-10-13 15:42:45,300 | INFO     | PID=11751 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 11:43:21] 2025-10-13 15:42:46,300 | INFO     | time since job start (4305s) is within the limit (172800.0s)
[2025-10-13 11:43:21] 2025-10-13 15:42:46,846 | INFO     | monitor loop #323: job 0:6841124734 is in state 'finished'
[2025-10-13 11:43:21] 2025-10-13 15:42:46,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:43:21] 2025-10-13 15:42:48,306 | INFO     | time since job start (4307s) is within the limit (172800.0s)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,349 | INFO     | monitor loop #324: job 0:6841124734 is in state 'finished'
[2025-10-13 11:43:21] 2025-10-13 15:42:49,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,766 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 11:43:21] 2025-10-13 15:42:49,770 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-13 11:43:21] 2025-10-13 15:42:49,771 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841124734/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,772 | INFO     | extracted standard info from prmon json
[2025-10-13 11:43:21] 2025-10-13 15:42:49,772 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 11:43:21] 2025-10-13 15:42:49,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 11:43:21] 2025-10-13 15:42:49,772 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 11:43:21] 2025-10-13 15:42:49,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 11:43:21] 2025-10-13 15:42:49,774 | INFO     | fitting pss+swap vs Time
[2025-10-13 11:43:21] 2025-10-13 15:42:49,774 | INFO     | sum of square deviations: 77515872.0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,774 | INFO     | sum of deviations: -7452994884.000001
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | mean x: 1760368086.0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | mean y: 2852494.3333333335
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | -- intersect: 169258696496.38333
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | intersect: 169258696496.38333
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | chi2: 0.05536811771921831
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | -- intersect: 169258696496.38333
[2025-10-13 11:43:21] 2025-10-13 15:42:49,775 | INFO     | current memory leak: -96.15 B/s (using 63 data points, chi2=0.06)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | ..............................
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . Timing measurements:
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . get job = 0 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . initial setup = 2 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . payload setup = 7 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . stage-in = 0 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . payload execution = 4271 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,776 | INFO     | . stage-out = 0 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,777 | INFO     | . log creation = 0 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,777 | INFO     | ..............................
[2025-10-13 11:43:21] 2025-10-13 15:42:49,858 | INFO     | 
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | job summary report
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | --------------------------------------------------
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | PanDA job id: 6841124734
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | task id: 46676269
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | errors: (none)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:43:21] 2025-10-13 15:42:49,859 | INFO     | pilot state: finished 
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | transexitcode: 0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | exeerrorcode: 0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | exeerrordiag: 
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | exitcode: 0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | exitmsg: OK
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | cpuconsumptiontime: 46313 s
[2025-10-13 11:43:21] 2025-10-13 15:42:49,860 | INFO     | nevents: 400
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | neventsw: 0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | pid: 18144
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | pgrp: 18144
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | corecount: 12
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | event service: False
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4282: 2375252, 4283: 2384250, 4284: 2384434, 4292: 2384628}
[2025-10-13 11:43:21] 2025-10-13 15:42:49,861 | INFO     | --------------------------------------------------
[2025-10-13 11:43:21] 2025-10-13 15:42:49,862 | INFO     | 
[2025-10-13 11:43:21] 2025-10-13 15:42:49,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 11:43:21] 2025-10-13 15:42:49,887 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,887 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,888 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,888 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,888 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,888 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,888 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,888 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,889 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,889 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,889 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,889 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:43:21] 2025-10-13 15:42:49,890 | INFO     | job 6841124734 has completed (purged errors)
[2025-10-13 11:43:21] 2025-10-13 15:42:49,890 | INFO     | overall cleanup function is called
[2025-10-13 11:43:21] 2025-10-13 15:42:50,898 | INFO     | --- collectZombieJob: --- 10, [18144]
[2025-10-13 11:43:21] 2025-10-13 15:42:50,898 | INFO     | zombie collector waiting for pid 18144
[2025-10-13 11:43:21] 2025-10-13 15:42:50,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:43:21] 2025-10-13 15:42:50,898 | INFO     | collected zombie processes
[2025-10-13 11:43:21] 2025-10-13 15:42:50,898 | INFO     | will attempt to kill all subprocesses of pid=18144
[2025-10-13 11:43:21] 2025-10-13 15:42:50,987 | INFO     | process IDs to be killed: [18144] (in reverse order)
[2025-10-13 11:43:21] 2025-10-13 15:42:51,038 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:43:21] 2025-10-13 15:42:51,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:43:21] 2025-10-13 15:42:51,041 | INFO     | did not find any defunct processes belonging to 18144
[2025-10-13 11:43:21] 2025-10-13 15:42:51,044 | INFO     | did not find any defunct processes belonging to 18144
[2025-10-13 11:43:21] 2025-10-13 15:42:51,044 | INFO     | ready for new job
[2025-10-13 11:43:21] 2025-10-13 15:42:51,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:43:21] 2025-10-13 15:42:51,045 | INFO     | ***************************************
[2025-10-13 11:43:21] 2025-10-13 15:42:51,045 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:43:21] 2025-10-13 15:42:51,045 | INFO     | ***************************************
[2025-10-13 11:43:21] 2025-10-13 15:42:51,045 | INFO     | 
[2025-10-13 11:43:21] 2025-10-13 15:42:51,046 | INFO     | architecture information:
[2025-10-13 11:43:21] 2025-10-13 15:42:51,046 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:43:21] 2025-10-13 15:42:51,060 | INFO     | cat /etc/os-release:
[2025-10-13 11:43:21] NAME="CentOS Linux"
[2025-10-13 11:43:21] VERSION="7 (Core)"
[2025-10-13 11:43:21] ID="centos"
[2025-10-13 11:43:21] ID_LIKE="rhel fedora"
[2025-10-13 11:43:21] VERSION_ID="7"
[2025-10-13 11:43:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:43:21] ANSI_COLOR="0;31"
[2025-10-13 11:43:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:43:21] HOME_URL="https://www.centos.org/"
[2025-10-13 11:43:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:43:21] 
[2025-10-13 11:43:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:43:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:43:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:43:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:43:21] 
[2025-10-13 11:43:21] 2025-10-13 15:42:51,060 | INFO     | ***************************************
[2025-10-13 11:43:21] 2025-10-13 15:42:51,563 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 11:43:21] 2025-10-13 15:42:51,579 | INFO     | sufficient remaining disk space (29367468032 B)
[2025-10-13 11:43:21] 2025-10-13 15:42:51,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:43:21] 2025-10-13 15:42:51,580 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:43:21] 2025-10-13 15:42:51,580 | INFO     | update_server=False
[2025-10-13 11:43:21] 2025-10-13 15:42:51,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:43:21] 2025-10-13 15:42:51,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:43:21] 2025-10-13 15:42:51,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:43:21] 2025-10-13 15:42:51,852 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 11:43:21] 2025-10-13 15:42:51,852 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 11:43:21] 2025-10-13 15:42:51,852 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:43:21] 2025-10-13 15:42:51,853 | INFO     | will abort loop
[2025-10-13 11:43:21] 2025-10-13 15:42:51,936 | INFO     | all data control threads have been joined
[2025-10-13 11:43:21] 2025-10-13 15:42:51,943 | INFO     | all payload control threads have been joined
[2025-10-13 11:43:21] 2025-10-13 15:42:52,262 | INFO     | all job control threads have been joined
[2025-10-13 11:43:21] 2025-10-13 15:42:52,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:43:21] 2025-10-13 15:42:52,586 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:52,587 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:52,858 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:52,920 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:52,941 | INFO     | [data] control thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:52,947 | INFO     | [payload] control thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,267 | INFO     | [job] control thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,374 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,587 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,614 | INFO     | [job] validate thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,740 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,767 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,916 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:53,953 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:42:56,547 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:43:02,282 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:43:21] 2025-10-13 15:43:03,288 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:43:21] 2025-10-13 15:43:08,081 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:43:21] 2025-10-13 15:43:09,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218496595776)>', '<ExcThread(monitor, started 140217923135232)>']
[2025-10-13 11:43:21] 2025-10-13 15:43:14,525 | INFO     | all workflow threads have been joined
[2025-10-13 11:43:21] 2025-10-13 15:43:14,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:43:21] 2025-10-13 15:43:14,525 | INFO     | traces error code: 0
[2025-10-13 11:43:21] 2025-10-13 15:43:14,526 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:43:21] 2025-10-13 15:43:21,505 | INFO     | PID=11751 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 11:43:21] 2025-10-13 15:43:21,505 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:43:21] 2025-10-13 15:43:21,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:43:21] 2025-10-13 15:43:21,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:43:21] 2025-10-13 15:43:21,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:43:21] 2025-10-13 15:43:21,506 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 11:43:21] 2025-10-13 15:43:21,506 | INFO     | [monitor] control thread has ended
[2025-10-13 11:43:21] 2025-10-13 15:43:21,599 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:43:21] 2025-10-13 15:43:21,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:43:21] 2025-10-13 15:43:21,607 [wrapper] pilotpid: 11751
[2025-10-13 11:43:21] 2025-10-13 15:43:21,611 [wrapper] Pilot exit status: 0
[2025-10-13 11:43:21] 2025-10-13 15:43:21,626 [wrapper] pandaids: 6841124734
[2025-10-13 11:43:21] 2025-10-13 15:43:21,664 [wrapper] cleanup supervisor_pilot 29685 11752
[2025-10-13 11:43:21] 2025-10-13 15:43:21,668 [wrapper] Test setup, not cleaning
[2025-10-13 11:43:21] 2025-10-13 15:43:21,672 [wrapper] apfmon messages muted
[2025-10-13 11:43:21] 2025-10-13 15:43:21,676 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:43:21] 2025-10-13 15:43:21,680 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:43:21]  *** Error codes and diagnostics ***
[2025-10-13 11:43:21]     "exeErrorCode": 0,
[2025-10-13 11:43:21]     "exeErrorDiag": "",
[2025-10-13 11:43:21]     "pilotErrorCode": 0,
[2025-10-13 11:43:21]     "pilotErrorDiag": "",
[2025-10-13 11:43:21]  *** Listing of results directory ***
[2025-10-13 11:43:21] total 409336
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 22:03 queuedata.json
[2025-10-13 11:43:21] -rwx------ 1 boincer umatlas     36292 Oct 12 22:04 runpilot2-wrapper.sh
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas       100 Oct 13 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:43:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 10:30 run_atlas
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas       105 Oct 13 10:30 job.xml
[2025-10-13 11:43:21] -rw-r--r-- 2 boincer umatlas 218166994 Oct 13 10:30 EVNT.46676267._004379.pool.root.1
[2025-10-13 11:43:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 10:30 start_atlas.sh
[2025-10-13 11:43:21] drwxrwx--x 2 boincer umatlas      4096 Oct 13 10:30 shared
[2025-10-13 11:43:21] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 10:30 input.tar.gz
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas         0 Oct 13 10:30 boinc_lockfile
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 10:30 pandaJob.out
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas    972791 Oct 13 10:30 agis_schedconf.cvmfs.json
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas   1560580 Oct 13 10:31 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:43:21] drwx------ 5 boincer umatlas      4096 Oct 13 10:31 pilot3
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 11:39 init_data.xml
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas 195067859 Oct 13 11:42 HITS.46676269._094601.pool.root.1
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas       530 Oct 13 11:42 boinc_task_state.xml
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas      1047 Oct 13 11:42 memory_monitor_summary.json
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas    384249 Oct 13 11:42 log.46676269._094601.job.log.tgz.1
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 11:42 boinc_mmap_file
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas        27 Oct 13 11:42 wrapper_checkpoint.txt
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas      7854 Oct 13 11:42 heartbeat.json
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas        95 Oct 13 11:43 pilot_heartbeat.json
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas       815 Oct 13 11:43 pilotlog.txt
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas    628253 Oct 13 11:43 log.46676269._094601.job.log.1
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas       357 Oct 13 11:43 output.list
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas       620 Oct 13 11:43 runtime_log
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas   1034240 Oct 13 11:43 result.tar.gz
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas       659 Oct 13 11:43 YwPKDmk6MS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqRmNDmNNl9en.diag
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 11:43 runtime_log.err
[2025-10-13 11:43:21] -rw-r--r-- 1 boincer umatlas     22335 Oct 13 11:43 stderr.txt
[2025-10-13 11:43:21] HITS file was successfully produced:
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas 195067859 Oct 13 11:42 shared/HITS.pool.root.1
[2025-10-13 11:43:21]  *** Contents of shared directory: ***
[2025-10-13 11:43:21] total 405148
[2025-10-13 11:43:21] -rw-r--r-- 2 boincer umatlas 218166994 Oct 13 10:30 ATLAS.root_0
[2025-10-13 11:43:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 10:30 start_atlas.sh
[2025-10-13 11:43:21] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 10:30 input.tar.gz
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas 195067859 Oct 13 11:42 HITS.pool.root.1
[2025-10-13 11:43:21] -rw------- 1 boincer umatlas   1034240 Oct 13 11:43 result.tar.gz
11:43:23 (8066): run_atlas exited; CPU time 46288.125596
11:43:23 (8066): called boinc_finish(0)

</stderr_txt>
]]>

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