Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:15:23 (3458112): wrapper (7.7.26015): starting
10:15:23 (3458112): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 10:15:23] Arguments: --nthreads 9
[2025-10-13 10:15:23] Threads: 9
[2025-10-13 10:15:23] Checking for CVMFS
[2025-10-13 10:15:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:15:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:15:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:15:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:15:24] 2.13.2.0 314321 114103 286232 151663 1 143 21417157 40960000 12711 16776704 1 155847182 99.757 99312777 40292 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 10:15:24] CVMFS is ok
[2025-10-13 10:15:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:15:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:15:25] Further information can be found at the LHC@home message board.
[2025-10-13 10:15:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:15:25] Checking for apptainer binary...
[2025-10-13 10:15:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:15:25] Running /usr/bin/apptainer --version
[2025-10-13 10:15:25] apptainer version 1.4.3-1.el9
[2025-10-13 10:15:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:15:25] c-206-37.aglt2.org
[2025-10-13 10:15:25] apptainer works
[2025-10-13 10:15:25] Set ATHENA_PROC_NUMBER=9
[2025-10-13 10:15:25] Set ATHENA_CORE_NUMBER=9
[2025-10-13 10:15:25] Starting ATLAS job with PandaID=6831313646
[2025-10-13 10:15:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:49:13]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:49:13]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6831313646/log.46376905._082164.job.log.tgz.1
[2025-10-13 11:49:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/55/log.46376905._082164.job.log.tgz.1
[2025-10-13 11:49:13]  workdir=None
[2025-10-13 11:49:13] ]
[2025-10-13 11:49:13] 2025-10-13 15:47:59,473 | INFO     | monitor loop #401: job 0:6831313646 is in state 'stageout'
[2025-10-13 11:49:13] 2025-10-13 15:47:59,473 | WARNING  | aborting job monitor tasks since payload process 3469774 is not running
[2025-10-13 11:49:13] 2025-10-13 15:47:59,473 | INFO     | transferring file log.46376905._082164.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6831313646/log.46376905._082164.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 11:49:13] 2025-10-13 15:47:59,474 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6831313646/log.46376905._082164.job.log.tgz.1 /tmp/boinchome/slots/2/log.46376905._082164.job
[2025-10-13 11:49:13] 2025-10-13 15:47:59,493 | INFO     | adding to output.list: log.46376905._082164.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/55/log.46376905._082164.job.log.tg
[2025-10-13 11:49:13] 2025-10-13 15:47:59,494 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 11:49:13] 2025-10-13 15:47:59,494 | INFO     | summary of transferred files:
[2025-10-13 11:49:13] 2025-10-13 15:47:59,494 | INFO     |  -- lfn=log.46376905._082164.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 11:49:13] 2025-10-13 15:47:59,494 | INFO     | stage-out finished correctly
[2025-10-13 11:49:13] 2025-10-13 15:47:59,561 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 11:49:13] 2025-10-13 15:47:59,631 | INFO     | job 6831313646 has state=finished
[2025-10-13 11:49:13] 2025-10-13 15:47:59,631 | INFO     | preparing for final server update for job 6831313646 in state='finished'
[2025-10-13 11:49:13] 2025-10-13 15:47:59,633 | INFO     | this job has now completed (state=finished)
[2025-10-13 11:49:13] 2025-10-13 15:47:59,633 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 11:49:13] 2025-10-13 15:47:59,634 | INFO     | log transfer has been attempted: DONE
[2025-10-13 11:49:13] 2025-10-13 15:47:59,634 | INFO     | job 6831313646 has finished - writing final server update
[2025-10-13 11:49:13] 2025-10-13 15:47:59,634 | INFO     | total number of processed events: 400 (read)
[2025-10-13 11:49:13] 2025-10-13 15:47:59,665 | INFO     | executing command: lscpu
[2025-10-13 11:49:13] 2025-10-13 15:47:59,752 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 11:49:13] 2025-10-13 15:48:01,148 | INFO     | time since job start (5524s) is within the limit (172800.0s)
[2025-10-13 11:49:13] 2025-10-13 15:48:01,978 | INFO     | monitor loop #402: job 0:6831313646 is in state 'finished'
[2025-10-13 11:49:13] 2025-10-13 15:48:01,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:49:13] 2025-10-13 15:48:03,156 | INFO     | time since job start (5526s) is within the limit (172800.0s)
[2025-10-13 11:49:13] 2025-10-13 15:48:04,487 | INFO     | monitor loop #403: job 0:6831313646 is in state 'finished'
[2025-10-13 11:49:13] 2025-10-13 15:48:04,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:49:13] 2025-10-13 15:48:05,170 | INFO     | time since job start (5528s) is within the limit (172800.0s)
[2025-10-13 11:49:13] 2025-10-13 15:48:06,993 | INFO     | monitor loop #404: job 0:6831313646 is in state 'finished'
[2025-10-13 11:49:13] 2025-10-13 15:48:06,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,176 | INFO     | time since job start (5530s) is within the limit (172800.0s)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,289 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 11:49:13] 2025-10-13 15:48:07,294 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3283.481296875001
[2025-10-13 11:49:13] 2025-10-13 15:48:07,328 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6831313646/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,329 | INFO     | extracted standard info from prmon json
[2025-10-13 11:49:13] 2025-10-13 15:48:07,329 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 11:49:13] 2025-10-13 15:48:07,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 11:49:13] 2025-10-13 15:48:07,330 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 11:49:13] 2025-10-13 15:48:07,330 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 11:49:13] 2025-10-13 15:48:07,331 | INFO     | fitting pss+swap vs Time
[2025-10-13 11:49:13] 2025-10-13 15:48:07,332 | INFO     | sum of square deviations: 177274541.95180708
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | sum of deviations: -20161120582.01204
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | mean x: 1760367821.0240965
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | mean y: 2815776.506024096
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | -- intersect: 200206339179.25717
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | intersect: 200206339179.25717
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | chi2: 0.0985494395740167
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | -- intersect: 200206339179.25717
[2025-10-13 11:49:13] 2025-10-13 15:48:07,333 | INFO     | current memory leak: -113.73 B/s (using 83 data points, chi2=0.10)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | could have reported an average CPU frequency of 3275 MHz (7 samples)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | ..............................
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . Timing measurements:
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . get job = 0 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . initial setup = 3 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . payload setup = 13 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . stage-in = 0 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . payload execution = 5469 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . stage-out = 0 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | . log creation = 0 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,334 | INFO     | ..............................
[2025-10-13 11:49:13] 2025-10-13 15:48:07,617 | INFO     | 
[2025-10-13 11:49:13] 2025-10-13 15:48:07,618 | INFO     | job summary report
[2025-10-13 11:49:13] 2025-10-13 15:48:07,618 | INFO     | --------------------------------------------------
[2025-10-13 11:49:13] 2025-10-13 15:48:07,618 | INFO     | PanDA job id: 6831313646
[2025-10-13 11:49:13] 2025-10-13 15:48:07,618 | INFO     | task id: 46376905
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | errors: (none)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | pilot state: finished 
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | transexitcode: 0
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | exeerrorcode: 0
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | exeerrordiag: 
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | exitcode: 0
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | exitmsg: OK
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | cpuconsumptiontime: 28399 s
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | nevents: 400
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | neventsw: 0
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | pid: 3469774
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | pgrp: 3469774
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | corecount: 9
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | event service: False
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | sizes: {0: 2348643, 1: 2348842, 12: 2348842, 18: 2349132, 23: 2349160, 5486: 2375746, 5487: 2375873, 5488: 2384983, 5496: 2385121}
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | --------------------------------------------------
[2025-10-13 11:49:13] 2025-10-13 15:48:07,619 | INFO     | 
[2025-10-13 11:49:13] 2025-10-13 15:48:07,620 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | job 6831313646 has completed (purged errors)
[2025-10-13 11:49:13] 2025-10-13 15:48:07,674 | INFO     | overall cleanup function is called
[2025-10-13 11:49:13] 2025-10-13 15:48:08,515 | INFO     | PID=3462530 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:49:13] 2025-10-13 15:48:08,515 | INFO     | .. there are 10 such processes running
[2025-10-13 11:49:13] 2025-10-13 15:48:08,683 | INFO     | --- collectZombieJob: --- 10, [3469774]
[2025-10-13 11:49:13] 2025-10-13 15:48:08,683 | INFO     | zombie collector waiting for pid 3469774
[2025-10-13 11:49:13] 2025-10-13 15:48:08,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:49:13] 2025-10-13 15:48:08,683 | INFO     | collected zombie processes
[2025-10-13 11:49:13] 2025-10-13 15:48:08,683 | INFO     | will attempt to kill all subprocesses of pid=3469774
[2025-10-13 11:49:13] 2025-10-13 15:48:08,968 | INFO     | process IDs to be killed: [3469774] (in reverse order)
[2025-10-13 11:49:13] 2025-10-13 15:48:09,062 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:49:13] 2025-10-13 15:48:09,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:49:13] 2025-10-13 15:48:09,072 | INFO     | did not find any defunct processes belonging to 3469774
[2025-10-13 11:49:13] 2025-10-13 15:48:09,082 | INFO     | did not find any defunct processes belonging to 3469774
[2025-10-13 11:49:13] 2025-10-13 15:48:09,082 | INFO     | ready for new job
[2025-10-13 11:49:13] 2025-10-13 15:48:09,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:49:13] 2025-10-13 15:48:09,085 | INFO     | ***************************************
[2025-10-13 11:49:13] 2025-10-13 15:48:09,085 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 11:49:13] 2025-10-13 15:48:09,085 | INFO     | ***************************************
[2025-10-13 11:49:13] 2025-10-13 15:48:09,085 | INFO     | 
[2025-10-13 11:49:13] 2025-10-13 15:48:09,118 | INFO     | architecture information:
[2025-10-13 11:49:13] 2025-10-13 15:48:09,133 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:49:13] 2025-10-13 15:48:09,170 | INFO     | cat /etc/os-release:
[2025-10-13 11:49:13] NAME="CentOS Linux"
[2025-10-13 11:49:13] VERSION="7 (Core)"
[2025-10-13 11:49:13] ID="centos"
[2025-10-13 11:49:13] ID_LIKE="rhel fedora"
[2025-10-13 11:49:13] VERSION_ID="7"
[2025-10-13 11:49:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:49:13] ANSI_COLOR="0;31"
[2025-10-13 11:49:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:49:13] HOME_URL="https://www.centos.org/"
[2025-10-13 11:49:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:49:13] 
[2025-10-13 11:49:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:49:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:49:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:49:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:49:13] 
[2025-10-13 11:49:13] 2025-10-13 15:48:09,171 | INFO     | ***************************************
[2025-10-13 11:49:13] 2025-10-13 15:48:09,674 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 11:49:13] 2025-10-13 15:48:09,697 | INFO     | sufficient remaining disk space (86035660800 B)
[2025-10-13 11:49:13] 2025-10-13 15:48:09,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:49:13] 2025-10-13 15:48:09,698 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:49:13] 2025-10-13 15:48:09,698 | INFO     | update_server=False
[2025-10-13 11:49:13] 2025-10-13 15:48:09,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:49:13] 2025-10-13 15:48:10,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:49:13] 2025-10-13 15:48:10,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:49:13] 2025-10-13 15:48:10,321 | INFO     | all job control threads have been joined
[2025-10-13 11:49:13] 2025-10-13 15:48:10,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:49:13] 2025-10-13 15:48:10,501 | INFO     | aborting loop
[2025-10-13 11:49:13] 2025-10-13 15:48:10,654 | INFO     | all data control threads have been joined
[2025-10-13 11:49:13] 2025-10-13 15:48:10,704 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:10,852 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:10,980 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,008 | INFO     | all payload control threads have been joined
[2025-10-13 11:49:13] 2025-10-13 15:48:11,161 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,162 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,219 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,328 | INFO     | [job] control thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,506 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,661 | INFO     | [data] control thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:11,897 | INFO     | [job] validate thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:12,013 | INFO     | [payload] control thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:12,088 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:12,090 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:12,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:49:13] 2025-10-13 15:48:13,590 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:14,184 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:20,502 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:49:13] 2025-10-13 15:48:21,508 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:49:13] 2025-10-13 15:48:40,898 | INFO     | PID=3462530 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 11:49:13] 2025-10-13 15:48:40,900 | INFO     | .. there are 10 such processes running
[2025-10-13 11:49:13] 2025-10-13 15:48:40,901 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:49:13] 2025-10-13 15:48:40,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:49:13] 2025-10-13 15:48:40,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:49:13] 2025-10-13 15:49:06,311 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:49:13] 2025-10-13 15:49:08,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681095608128)>', '<ExcThread(monitor, started 139680339171072)>']
[2025-10-13 11:49:13] 2025-10-13 15:49:09,060 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:49:13] 2025-10-13 15:49:09,062 | INFO     | [monitor] control thread has ended
[2025-10-13 11:49:13] 2025-10-13 15:49:13,373 | INFO     | all workflow threads have been joined
[2025-10-13 11:49:13] 2025-10-13 15:49:13,376 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:49:13] 2025-10-13 15:49:13,376 | INFO     | traces error code: 0
[2025-10-13 11:49:13] 2025-10-13 15:49:13,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:49:13] 2025-10-13 15:49:13,541 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:49:13] 2025-10-13 15:49:13,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:49:13] 2025-10-13 15:49:13,547 [wrapper] pilotpid: 3462530
[2025-10-13 11:49:13] 2025-10-13 15:49:13,551 [wrapper] Pilot exit status: 0
[2025-10-13 11:49:13] 2025-10-13 15:49:13,579 [wrapper] pandaids: 6831313646
[2025-10-13 11:49:13] 2025-10-13 15:49:13,684 [wrapper] cleanup supervisor_pilot 3642523 3462531
[2025-10-13 11:49:13] 2025-10-13 15:49:13,690 [wrapper] Test setup, not cleaning
[2025-10-13 11:49:13] 2025-10-13 15:49:13,698 [wrapper] apfmon messages muted
[2025-10-13 11:49:13] 2025-10-13 15:49:13,701 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:49:13] 2025-10-13 15:49:13,704 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:49:13]  *** Error codes and diagnostics ***
[2025-10-13 11:49:13]     "exeErrorCode": 0,
[2025-10-13 11:49:13]     "exeErrorDiag": "",
[2025-10-13 11:49:13]     "pilotErrorCode": 0,
[2025-10-13 11:49:13]     "pilotErrorDiag": "",
[2025-10-13 11:49:13]  *** Listing of results directory ***
[2025-10-13 11:49:13] total 384908
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 06:50 pilot3.tar.gz
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 06:51 queuedata.json
[2025-10-13 11:49:13] -rwx------. 1 boincer umatlas     36292 Oct  5 06:52 runpilot2-wrapper.sh
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas       100 Oct 13 10:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:49:13] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 10:15 run_atlas
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas       105 Oct 13 10:15 job.xml
[2025-10-13 11:49:13] -rw-r--r--. 2 boincer umatlas 213883004 Oct 13 10:15 EVNT.46376901._003012.pool.root.1
[2025-10-13 11:49:13] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 10:15 start_atlas.sh
[2025-10-13 11:49:13] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 10:15 shared
[2025-10-13 11:49:13] -rw-r--r--. 2 boincer umatlas    565600 Oct 13 10:15 input.tar.gz
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas         0 Oct 13 10:15 boinc_lockfile
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas      2518 Oct 13 10:15 pandaJob.out
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas    972489 Oct 13 10:15 agis_schedconf.cvmfs.json
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas   1560580 Oct 13 10:15 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:49:13] drwx------. 4 boincer umatlas      4096 Oct 13 10:15 pilot3
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas      6899 Oct 13 11:45 init_data.xml
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas 174096853 Oct 13 11:47 HITS.46376905._082164.pool.root.1
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas       529 Oct 13 11:47 boinc_task_state.xml
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas        95 Oct 13 11:47 pilot_heartbeat.json
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas      1035 Oct 13 11:47 memory_monitor_summary.json
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas    341757 Oct 13 11:47 log.46376905._082164.job.log.tgz.1
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas      7786 Oct 13 11:48 heartbeat.json
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 11:49 boinc_mmap_file
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas        27 Oct 13 11:49 wrapper_checkpoint.txt
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas      4896 Oct 13 11:49 pilotlog.txt
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas    793781 Oct 13 11:49 log.46376905._082164.job.log.1
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas       357 Oct 13 11:49 output.list
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas       620 Oct 13 11:49 runtime_log
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas   1157120 Oct 13 11:49 result.tar.gz
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas      8703 Oct 13 11:49 runtime_log.err
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas       656 Oct 13 11:49 2UDMDm5WbP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXyFMDm2sbspn.diag
[2025-10-13 11:49:13] -rw-r--r--. 1 boincer umatlas     22373 Oct 13 11:49 stderr.txt
[2025-10-13 11:49:13] HITS file was successfully produced:
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas 174096853 Oct 13 11:47 shared/HITS.pool.root.1
[2025-10-13 11:49:13]  *** Contents of shared directory: ***
[2025-10-13 11:49:13] total 380604
[2025-10-13 11:49:13] -rw-r--r--. 2 boincer umatlas 213883004 Oct 13 10:15 ATLAS.root_0
[2025-10-13 11:49:13] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 10:15 start_atlas.sh
[2025-10-13 11:49:13] -rw-r--r--. 2 boincer umatlas    565600 Oct 13 10:15 input.tar.gz
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas 174096853 Oct 13 11:47 HITS.pool.root.1
[2025-10-13 11:49:13] -rw-------. 1 boincer umatlas   1157120 Oct 13 11:49 result.tar.gz
11:49:15 (3458112): run_atlas exited; CPU time 28412.235078
11:49:15 (3458112): called boinc_finish(0)

</stderr_txt>
]]>

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