Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
21:49:18 (2317291): wrapper (7.7.26015): starting
21:49:18 (2317291): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 21:49:18] Arguments: --nthreads 8
[2025-10-13 21:49:18] Threads: 8
[2025-10-13 21:49:18] Checking for CVMFS
[2025-10-13 21:49:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 21:49:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 21:49:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 21:49:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 21:49:19] 2.11.5.0 2297777 1 45864 151671 2 188 2768099 4194305 874 130560 0 46278 99.998 68 53 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 21:49:19] CVMFS is ok
[2025-10-13 21:49:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 21:49:19] Checking for apptainer binary...
[2025-10-13 21:49:19] apptainer is not installed, using version from CVMFS
[2025-10-13 21:49:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 21:49:19] mikemint-desktop
[2025-10-13 21:49:19] apptainer works
[2025-10-13 21:49:19] Set ATHENA_PROC_NUMBER=8
[2025-10-13 21:49:19] Set ATHENA_CORE_NUMBER=8
[2025-10-13 21:49:19] Starting ATLAS job with PandaID=6841069284
[2025-10-13 21:49:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 22:56:53]  *** The last 200 lines of the pilot log: ***
[2025-10-13 22:56:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/6d/log.46676269._093416.job.log.tgz.1
[2025-10-13 22:56:53]  workdir=None
[2025-10-13 22:56:53] ]
[2025-10-13 22:56:53] 2025-10-13 20:56:12,142 | INFO     | transferring file log.46676269._093416.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6841069284/log.46676269._093416.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 22:56:53] 2025-10-13 20:56:12,142 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6841069284/log.46676269._093416.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.466762
[2025-10-13 22:56:53] 2025-10-13 20:56:12,159 | INFO     | adding to output.list: log.46676269._093416.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/6d/log.46676269._093416.job.log.tg
[2025-10-13 22:56:53] 2025-10-13 20:56:12,160 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 22:56:53] 2025-10-13 20:56:12,160 | INFO     | summary of transferred files:
[2025-10-13 22:56:53] 2025-10-13 20:56:12,160 | INFO     |  -- lfn=log.46676269._093416.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 22:56:53] 2025-10-13 20:56:12,160 | INFO     | stage-out finished correctly
[2025-10-13 22:56:53] 2025-10-13 20:56:12,702 | INFO     | PID=2321499 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:56:53] 2025-10-13 20:56:12,702 | INFO     | .. there are 2 such processes running
[2025-10-13 22:56:53] 2025-10-13 20:56:12,937 | INFO     | monitor loop #297: job 0:6841069284 is in state 'finished'
[2025-10-13 22:56:53] 2025-10-13 20:56:12,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:56:53] 2025-10-13 20:56:13,703 | INFO     | time since job start (4004s) is within the limit (172800.0s)
[2025-10-13 22:56:53] 2025-10-13 20:56:13,873 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 22:56:53] 2025-10-13 20:56:15,440 | INFO     | monitor loop #298: job 0:6841069284 is in state 'finished'
[2025-10-13 22:56:53] 2025-10-13 20:56:15,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:56:53] 2025-10-13 20:56:15,708 | INFO     | time since job start (4006s) is within the limit (172800.0s)
[2025-10-13 22:56:53] 2025-10-13 20:56:16,225 | INFO     | job 6841069284 has state=finished
[2025-10-13 22:56:53] 2025-10-13 20:56:16,225 | INFO     | preparing for final server update for job 6841069284 in state='finished'
[2025-10-13 22:56:53] 2025-10-13 20:56:16,225 | INFO     | this job has now completed (state=finished)
[2025-10-13 22:56:53] 2025-10-13 20:56:16,226 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 22:56:53] 2025-10-13 20:56:16,226 | INFO     | log transfer has been attempted: DONE
[2025-10-13 22:56:53] 2025-10-13 20:56:16,226 | INFO     | job 6841069284 has finished - writing final server update
[2025-10-13 22:56:53] 2025-10-13 20:56:16,226 | INFO     | total number of processed events: 400 (read)
[2025-10-13 22:56:53] 2025-10-13 20:56:16,226 | INFO     | executing command: lscpu
[2025-10-13 22:56:53] 2025-10-13 20:56:16,313 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 22:56:53] 2025-10-13 20:56:17,714 | INFO     | time since job start (4008s) is within the limit (172800.0s)
[2025-10-13 22:56:53] 2025-10-13 20:56:17,941 | INFO     | monitor loop #299: job 0:6841069284 is in state 'finished'
[2025-10-13 22:56:53] 2025-10-13 20:56:17,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:56:53] 2025-10-13 20:56:19,717 | INFO     | time since job start (4010s) is within the limit (172800.0s)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,444 | INFO     | monitor loop #300: job 0:6841069284 is in state 'finished'
[2025-10-13 22:56:53] 2025-10-13 20:56:20,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,547 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 22:56:53] 2025-10-13 20:56:20,584 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2408.0631328125
[2025-10-13 22:56:53] 2025-10-13 20:56:20,629 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6841069284/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,630 | INFO     | extracted standard info from prmon json
[2025-10-13 22:56:53] 2025-10-13 20:56:20,630 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 22:56:53] 2025-10-13 20:56:20,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 22:56:53] 2025-10-13 20:56:20,630 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 22:56:53] 2025-10-13 20:56:20,630 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 22:56:53] 2025-10-13 20:56:20,631 | INFO     | fitting pss+swap vs Time
[2025-10-13 22:56:53] 2025-10-13 20:56:20,631 | INFO     | sum of square deviations: 63666310.0
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | sum of deviations: -945574725.0000001
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | mean x: 1760387069.0
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | mean y: 2531332.6101694917
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | -- intersect: 26147874429.504448
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | intersect: 26147874429.504448
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | chi2: 0.02592570316587017
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | -- intersect: 26147874429.504448
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | current memory leak: -14.85 B/s (using 59 data points, chi2=0.03)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | could have reported an average CPU frequency of 2376 MHz (6 samples)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | ..............................
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | . Timing measurements:
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | . get job = 0 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | . initial setup = 1 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,632 | INFO     | . payload setup = 5 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,633 | INFO     | . stage-in = 0 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,633 | INFO     | . payload execution = 3977 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,633 | INFO     | . stage-out = 0 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,633 | INFO     | . log creation = 0 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,633 | INFO     | ..............................
[2025-10-13 22:56:53] 2025-10-13 20:56:20,696 | INFO     | 
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | job summary report
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | --------------------------------------------------
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | PanDA job id: 6841069284
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | task id: 46676269
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | errors: (none)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | pilot state: finished 
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | transexitcode: 0
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | exeerrorcode: 0
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | exeerrordiag: 
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | exitcode: 0
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | exitmsg: OK
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | cpuconsumptiontime: 29084 s
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | nevents: 400
[2025-10-13 22:56:53] 2025-10-13 20:56:20,697 | INFO     | neventsw: 0
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | pid: 2328821
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | pgrp: 2328821
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | corecount: 8
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | event service: False
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | sizes: {0: 2348692, 1: 2348891, 5: 2349153, 11: 2349209, 3986: 2375191, 3987: 2384203, 3989: 2384387, 3996: 2384581}
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | --------------------------------------------------
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | 
[2025-10-13 22:56:53] 2025-10-13 20:56:20,698 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,714 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,715 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,716 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,716 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 22:56:53] 2025-10-13 20:56:20,716 | INFO     | job 6841069284 has completed (purged errors)
[2025-10-13 22:56:53] 2025-10-13 20:56:20,716 | INFO     | overall cleanup function is called
[2025-10-13 22:56:53] 2025-10-13 20:56:21,725 | INFO     | --- collectZombieJob: --- 10, [2328821]
[2025-10-13 22:56:53] 2025-10-13 20:56:21,725 | INFO     | zombie collector waiting for pid 2328821
[2025-10-13 22:56:53] 2025-10-13 20:56:21,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 22:56:53] 2025-10-13 20:56:21,725 | INFO     | collected zombie processes
[2025-10-13 22:56:53] 2025-10-13 20:56:21,725 | INFO     | will attempt to kill all subprocesses of pid=2328821
[2025-10-13 22:56:53] 2025-10-13 20:56:21,999 | INFO     | process IDs to be killed: [2328821] (in reverse order)
[2025-10-13 22:56:53] 2025-10-13 20:56:22,091 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 22:56:53] 2025-10-13 20:56:22,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 22:56:53] 2025-10-13 20:56:22,100 | INFO     | did not find any defunct processes belonging to 2328821
[2025-10-13 22:56:53] 2025-10-13 20:56:22,108 | INFO     | did not find any defunct processes belonging to 2328821
[2025-10-13 22:56:53] 2025-10-13 20:56:22,108 | INFO     | ready for new job
[2025-10-13 22:56:53] 2025-10-13 20:56:22,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 22:56:53] 2025-10-13 20:56:22,109 | INFO     | ***************************************
[2025-10-13 22:56:53] 2025-10-13 20:56:22,109 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 22:56:53] 2025-10-13 20:56:22,109 | INFO     | ***************************************
[2025-10-13 22:56:53] 2025-10-13 20:56:22,109 | INFO     | 
[2025-10-13 22:56:53] 2025-10-13 20:56:22,142 | INFO     | architecture information:
[2025-10-13 22:56:53] 2025-10-13 20:56:22,142 | INFO     | executing command: cat /etc/os-release
[2025-10-13 22:56:53] 2025-10-13 20:56:22,160 | INFO     | cat /etc/os-release:
[2025-10-13 22:56:53] NAME="CentOS Linux"
[2025-10-13 22:56:53] VERSION="7 (Core)"
[2025-10-13 22:56:53] ID="centos"
[2025-10-13 22:56:53] ID_LIKE="rhel fedora"
[2025-10-13 22:56:53] VERSION_ID="7"
[2025-10-13 22:56:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 22:56:53] ANSI_COLOR="0;31"
[2025-10-13 22:56:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 22:56:53] HOME_URL="https://www.centos.org/"
[2025-10-13 22:56:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 22:56:53] 
[2025-10-13 22:56:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 22:56:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 22:56:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 22:56:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 22:56:53] 
[2025-10-13 22:56:53] 2025-10-13 20:56:22,161 | INFO     | ***************************************
[2025-10-13 22:56:53] 2025-10-13 20:56:22,663 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-13 22:56:53] 2025-10-13 20:56:22,680 | INFO     | sufficient remaining disk space (204902236160 B)
[2025-10-13 22:56:53] 2025-10-13 20:56:22,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 22:56:53] 2025-10-13 20:56:22,680 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 22:56:53] 2025-10-13 20:56:22,680 | INFO     | update_server=False
[2025-10-13 22:56:53] 2025-10-13 20:56:22,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 22:56:53] 2025-10-13 20:56:22,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:56:53] 2025-10-13 20:56:22,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 22:56:53] 2025-10-13 20:56:22,945 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 22:56:53] 2025-10-13 20:56:22,945 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 22:56:53] 2025-10-13 20:56:22,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 22:56:53] 2025-10-13 20:56:22,945 | INFO     | will abort loop
[2025-10-13 22:56:53] 2025-10-13 20:56:23,051 | INFO     | all data control threads have been joined
[2025-10-13 22:56:53] 2025-10-13 20:56:23,271 | INFO     | all job control threads have been joined
[2025-10-13 22:56:53] 2025-10-13 20:56:23,451 | INFO     | all payload control threads have been joined
[2025-10-13 22:56:53] 2025-10-13 20:56:23,685 | INFO     | [job] retrieve thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:23,685 | INFO     | [job] queue monitor thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:23,884 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:23,950 | INFO     | [job] job monitor thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,053 | INFO     | [data] control thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,066 | INFO     | [payload] failed_post thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,273 | INFO     | [job] control thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 22:56:53] 2025-10-13 20:56:24,457 | INFO     | [payload] control thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,517 | INFO     | [job] validate thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,622 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,741 | INFO     | [data] copytool_out thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,752 | INFO     | [data] copytool_in thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:24,753 | INFO     | [payload] validate_post thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:25,093 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:28,449 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 22:56:53] 2025-10-13 20:56:35,201 | INFO     | [monitor] cgroup control has ended
[2025-10-13 22:56:53] 2025-10-13 20:56:37,309 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140013503543104)>', '<ExcThread(monitor, started 140013207529216)>']
[2025-10-13 22:56:53] 2025-10-13 20:56:42,333 | INFO     | all workflow threads have been joined
[2025-10-13 22:56:53] 2025-10-13 20:56:42,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 22:56:53] 2025-10-13 20:56:42,333 | INFO     | traces error code: 0
[2025-10-13 22:56:53] 2025-10-13 20:56:42,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | INFO     | PID=2321499 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | INFO     | .. there are 2 such processes running
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 22:56:53] 2025-10-13 20:56:53,085 | INFO     | [monitor] control thread has ended
[2025-10-13 22:56:53] 2025-10-13 20:56:53,182 [wrapper] ==== pilot stdout END ====
[2025-10-13 22:56:53] 2025-10-13 20:56:53,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 22:56:53] 2025-10-13 20:56:53,187 [wrapper] pilotpid: 2321499
[2025-10-13 22:56:53] 2025-10-13 20:56:53,190 [wrapper] Pilot exit status: 0
[2025-10-13 22:56:53] 2025-10-13 20:56:53,200 [wrapper] pandaids: 6841069284
[2025-10-13 22:56:53] 2025-10-13 20:56:53,263 [wrapper] cleanup supervisor_pilot 2391332 2321500
[2025-10-13 22:56:53] 2025-10-13 20:56:53,265 [wrapper] Test setup, not cleaning
[2025-10-13 22:56:53] 2025-10-13 20:56:53,269 [wrapper] apfmon messages muted
[2025-10-13 22:56:53] 2025-10-13 20:56:53,271 [wrapper] ==== wrapper stdout END ====
[2025-10-13 22:56:53] 2025-10-13 20:56:53,274 [wrapper] ==== wrapper stderr END ====
[2025-10-13 22:56:53]  *** Error codes and diagnostics ***
[2025-10-13 22:56:53]     "exeErrorCode": 0,
[2025-10-13 22:56:53]     "exeErrorDiag": "",
[2025-10-13 22:56:53]     "pilotErrorCode": 0,
[2025-10-13 22:56:53]     "pilotErrorDiag": "",
[2025-10-13 22:56:53]  *** Listing of results directory ***
[2025-10-13 22:56:53] insgesamt 418728
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc    557409 Okt 13 02:11 pilot3.tar.gz
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc      5112 Okt 13 02:44 queuedata.json
[2025-10-13 22:56:53] -rwx------ 1 boinc boinc     36292 Okt 13 02:46 runpilot2-wrapper.sh
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc       100 Okt 13 21:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 22:56:53] -rwxr-xr-x 1 boinc boinc      7986 Okt 13 21:49 run_atlas
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc       105 Okt 13 21:49 job.xml
[2025-10-13 22:56:53] -rw-r--r-- 2 boinc boinc     15120 Okt 13 21:49 start_atlas.sh
[2025-10-13 22:56:53] drwxrwx--x 2 boinc boinc      4096 Okt 13 21:49 shared
[2025-10-13 22:56:53] -rw-r--r-- 2 boinc boinc    569681 Okt 13 21:49 input.tar.gz
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc      6666 Okt 13 21:49 init_data.xml
[2025-10-13 22:56:53] -rw-r--r-- 2 boinc boinc 221476906 Okt 13 21:49 EVNT.46676267._004703.pool.root.1
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc         0 Okt 13 21:49 boinc_lockfile
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc      2549 Okt 13 21:49 pandaJob.out
[2025-10-13 22:56:53] -rw------- 1 boinc boinc    972799 Okt 13 21:49 agis_schedconf.cvmfs.json
[2025-10-13 22:56:53] -rw------- 1 boinc boinc   1560580 Okt 13 21:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 22:56:53] drwx------ 5 boinc boinc      4096 Okt 13 21:49 pilot3
[2025-10-13 22:56:53] -rw------- 1 boinc boinc 201558548 Okt 13 22:55 HITS.46676269._093416.pool.root.1
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc       529 Okt 13 22:55 boinc_task_state.xml
[2025-10-13 22:56:53] -rw------- 1 boinc boinc        95 Okt 13 22:55 pilot_heartbeat.json
[2025-10-13 22:56:53] -rw------- 1 boinc boinc      1032 Okt 13 22:56 memory_monitor_summary.json
[2025-10-13 22:56:53] -rw------- 1 boinc boinc    318609 Okt 13 22:56 log.46676269._093416.job.log.tgz.1
[2025-10-13 22:56:53] -rw------- 1 boinc boinc      7748 Okt 13 22:56 heartbeat.json
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc      8192 Okt 13 22:56 boinc_mmap_file
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc        27 Okt 13 22:56 wrapper_checkpoint.txt
[2025-10-13 22:56:53] -rw------- 1 boinc boinc       822 Okt 13 22:56 pilotlog.txt
[2025-10-13 22:56:53] -rw------- 1 boinc boinc    599652 Okt 13 22:56 log.46676269._093416.job.log.1
[2025-10-13 22:56:53] -rw------- 1 boinc boinc       357 Okt 13 22:56 output.list
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc       620 Okt 13 22:56 runtime_log
[2025-10-13 22:56:53] -rw------- 1 boinc boinc    942080 Okt 13 22:56 result.tar.gz
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc      8842 Okt 13 22:56 runtime_log.err
[2025-10-13 22:56:53] -rw------- 1 boinc boinc       664 Okt 13 22:56 5kEODmqsLS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgPVMDmeXwVMn.diag
[2025-10-13 22:56:53] -rw-r--r-- 1 boinc boinc     22089 Okt 13 22:56 stderr.txt
[2025-10-13 22:56:53] HITS file was successfully produced:
[2025-10-13 22:56:53] -rw------- 1 boinc boinc 201558548 Okt 13 22:55 shared/HITS.pool.root.1
[2025-10-13 22:56:53]  *** Contents of shared directory: ***
[2025-10-13 22:56:53] insgesamt 414628
[2025-10-13 22:56:53] -rw-r--r-- 2 boinc boinc     15120 Okt 13 21:49 start_atlas.sh
[2025-10-13 22:56:53] -rw-r--r-- 2 boinc boinc    569681 Okt 13 21:49 input.tar.gz
[2025-10-13 22:56:53] -rw-r--r-- 2 boinc boinc 221476906 Okt 13 21:49 ATLAS.root_0
[2025-10-13 22:56:53] -rw------- 1 boinc boinc 201558548 Okt 13 22:55 HITS.pool.root.1
[2025-10-13 22:56:53] -rw------- 1 boinc boinc    942080 Okt 13 22:56 result.tar.gz
22:56:54 (2317291): run_atlas exited; CPU time 29209.096249
22:56:54 (2317291): called boinc_finish(0)

</stderr_txt>
]]>

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