Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:00:55 (3770300): wrapper (7.7.26015): starting
09:00:55 (3770300): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 09:00:55] Arguments: --nthreads 9
[2025-10-13 09:00:55] Threads: 9
[2025-10-13 09:00:55] Checking for CVMFS
[2025-10-13 09:00:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:00:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:00:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:00:56] 2.13.2.0 1643581 130733 537560 151594 -2477 1455 28954749 40960000 25368 16776704 0 489406816 99.779 293567735 17518 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 09:00:56] CVMFS is ok
[2025-10-13 09:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:00:56] Further information can be found at the LHC@home message board.
[2025-10-13 09:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:00:56] Checking for apptainer binary...
[2025-10-13 09:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:00:56] Running /usr/bin/apptainer --version
[2025-10-13 09:00:56] apptainer version 1.4.3-1.el9
[2025-10-13 09:00:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:00:57] c7-3-35.aglt2.org
[2025-10-13 09:00:57] apptainer works
[2025-10-13 09:00:57] Set ATHENA_PROC_NUMBER=9
[2025-10-13 09:00:57] Set ATHENA_CORE_NUMBER=9
[2025-10-13 09:00:57] Starting ATLAS job with PandaID=6841186300
[2025-10-13 09:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:35:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:35:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 10:35:40]  replicas=None
[2025-10-13 10:35:40]  scope=mc23_13p6TeV
[2025-10-13 10:35:40]  status=None
[2025-10-13 10:35:40]  status_code=0
[2025-10-13 10:35:40]  storage_token=
[2025-10-13 10:35:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6841186300/log.46676269._094863.job.log.tgz.1
[2025-10-13 10:35:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/aa/log.46676269._094863.job.log.tgz.1
[2025-10-13 10:35:40]  workdir=None
[2025-10-13 10:35:40] ]
[2025-10-13 10:35:40] 2025-10-13 14:34:46,615 | INFO     | transferring file log.46676269._094863.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6841186300/log.46676269._094863.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 10:35:40] 2025-10-13 14:34:46,615 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6841186300/log.46676269._094863.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._094863.job
[2025-10-13 10:35:40] 2025-10-13 14:34:46,633 | INFO     | adding to output.list: log.46676269._094863.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/aa/log.46676269._094863.job.log.tg
[2025-10-13 10:35:40] 2025-10-13 14:34:46,634 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 10:35:40] 2025-10-13 14:34:46,634 | INFO     | summary of transferred files:
[2025-10-13 10:35:40] 2025-10-13 14:34:46,634 | INFO     |  -- lfn=log.46676269._094863.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 10:35:40] 2025-10-13 14:34:46,634 | INFO     | stage-out finished correctly
[2025-10-13 10:35:40] 2025-10-13 14:34:46,655 | INFO     | time since job start (5601s) is within the limit (172800.0s)
[2025-10-13 10:35:40] 2025-10-13 14:34:46,709 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 10:35:40] 2025-10-13 14:34:46,779 | INFO     | job 6841186300 has state=finished
[2025-10-13 10:35:40] 2025-10-13 14:34:46,779 | INFO     | preparing for final server update for job 6841186300 in state='finished'
[2025-10-13 10:35:40] 2025-10-13 14:34:46,780 | INFO     | this job has now completed (state=finished)
[2025-10-13 10:35:40] 2025-10-13 14:34:46,780 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 10:35:40] 2025-10-13 14:34:46,780 | INFO     | log transfer has been attempted: DONE
[2025-10-13 10:35:40] 2025-10-13 14:34:46,780 | INFO     | job 6841186300 has finished - writing final server update
[2025-10-13 10:35:40] 2025-10-13 14:34:46,780 | INFO     | total number of processed events: 400 (read)
[2025-10-13 10:35:40] 2025-10-13 14:34:46,781 | INFO     | executing command: lscpu
[2025-10-13 10:35:40] 2025-10-13 14:34:46,849 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 10:35:40] 2025-10-13 14:34:48,377 | WARNING  | process 3781254 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 10:35:40] 2025-10-13 14:34:48,377 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841186300/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:35:40] 2025-10-13 14:34:48,666 | INFO     | time since job start (5603s) is within the limit (172800.0s)
[2025-10-13 10:35:40] 2025-10-13 14:34:48,770 | INFO     | number of running child processes to parent process 3781254: 1
[2025-10-13 10:35:40] 2025-10-13 14:34:48,771 | INFO     | maximum number of monitored processes: 6
[2025-10-13 10:35:40] 2025-10-13 14:34:50,672 | INFO     | time since job start (5605s) is within the limit (172800.0s)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,274 | INFO     | monitor loop #389: job 0:6841186300 is in state 'finished'
[2025-10-13 10:35:40] 2025-10-13 14:34:51,275 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,326 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 10:35:40] 2025-10-13 14:34:51,332 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3040.906666666668
[2025-10-13 10:35:40] 2025-10-13 14:34:51,347 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6841186300/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,348 | INFO     | extracted standard info from prmon json
[2025-10-13 10:35:40] 2025-10-13 14:34:51,348 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 10:35:40] 2025-10-13 14:34:51,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 10:35:40] 2025-10-13 14:34:51,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 10:35:40] 2025-10-13 14:34:51,348 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 10:35:40] 2025-10-13 14:34:51,350 | INFO     | fitting pss+swap vs Time
[2025-10-13 10:35:40] 2025-10-13 14:34:51,350 | INFO     | sum of square deviations: 183761585.0
[2025-10-13 10:35:40] 2025-10-13 14:34:51,350 | INFO     | sum of deviations: 4196845994.0000005
[2025-10-13 10:35:40] 2025-10-13 14:34:51,350 | INFO     | mean x: 1760363383.5
[2025-10-13 10:35:40] 2025-10-13 14:34:51,350 | INFO     | mean y: 2720343.3333333335
[2025-10-13 10:35:40] 2025-10-13 14:34:51,350 | INFO     | -- intersect: -40201406183.03648
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | intersect: -40201406183.03648
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | chi2: 0.04809588664042187
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | -- intersect: -40201406183.03648
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | current memory leak: 22.84 B/s (using 84 data points, chi2=0.05)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | could have reported an average CPU frequency of 3036 MHz (7 samples)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | ..............................
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | . Timing measurements:
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | . get job = 0 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,351 | INFO     | . initial setup = 4 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,352 | INFO     | . payload setup = 14 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,352 | INFO     | . stage-in = 0 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,352 | INFO     | . payload execution = 5547 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,352 | INFO     | . stage-out = 0 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,352 | INFO     | . log creation = 0 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,352 | INFO     | ..............................
[2025-10-13 10:35:40] 2025-10-13 14:34:51,788 | INFO     | 
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | job summary report
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | --------------------------------------------------
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | PanDA job id: 6841186300
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | task id: 46676269
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | errors: (none)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | pilot state: finished 
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | transexitcode: 0
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | exeerrorcode: 0
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | exeerrordiag: 
[2025-10-13 10:35:40] 2025-10-13 14:34:51,789 | INFO     | exitcode: 0
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | exitmsg: OK
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | cpuconsumptiontime: 34094 s
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | nevents: 400
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | neventsw: 0
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | pid: 3781254
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | pgrp: 3781254
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | corecount: 9
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | event service: False
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | sizes: {0: 2347977, 1: 2348719, 2: 2348861, 12: 2348861, 13: 2349151, 23: 2349207, 5565: 2376036, 5566: 2376035, 5567: 2385145, 5571: 2385283}
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | --------------------------------------------------
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | 
[2025-10-13 10:35:40] 2025-10-13 14:34:51,790 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 10:35:40] 2025-10-13 14:34:51,813 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,813 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,813 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,813 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,814 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,815 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:35:40] 2025-10-13 14:34:51,815 | INFO     | job 6841186300 has completed (purged errors)
[2025-10-13 10:35:40] 2025-10-13 14:34:51,815 | INFO     | overall cleanup function is called
[2025-10-13 10:35:40] 2025-10-13 14:34:52,823 | INFO     | --- collectZombieJob: --- 10, [3781254]
[2025-10-13 10:35:40] 2025-10-13 14:34:52,823 | INFO     | zombie collector waiting for pid 3781254
[2025-10-13 10:35:40] 2025-10-13 14:34:52,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:35:40] 2025-10-13 14:34:52,824 | INFO     | collected zombie processes
[2025-10-13 10:35:40] 2025-10-13 14:34:52,824 | INFO     | will attempt to kill all subprocesses of pid=3781254
[2025-10-13 10:35:40] 2025-10-13 14:34:53,267 | INFO     | process IDs to be killed: [3781254] (in reverse order)
[2025-10-13 10:35:40] 2025-10-13 14:34:53,402 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:35:40] 2025-10-13 14:34:53,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:35:40] 2025-10-13 14:34:53,423 | INFO     | did not find any defunct processes belonging to 3781254
[2025-10-13 10:35:40] 2025-10-13 14:34:53,442 | INFO     | did not find any defunct processes belonging to 3781254
[2025-10-13 10:35:40] 2025-10-13 14:34:53,443 | INFO     | ready for new job
[2025-10-13 10:35:40] 2025-10-13 14:34:53,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:35:40] 2025-10-13 14:34:53,445 | INFO     | ***************************************
[2025-10-13 10:35:40] 2025-10-13 14:34:53,446 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:35:40] 2025-10-13 14:34:53,446 | INFO     | ***************************************
[2025-10-13 10:35:40] 2025-10-13 14:34:53,446 | INFO     | 
[2025-10-13 10:35:40] 2025-10-13 14:34:53,464 | INFO     | architecture information:
[2025-10-13 10:35:40] 2025-10-13 14:34:53,465 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:35:40] 2025-10-13 14:34:53,483 | INFO     | cat /etc/os-release:
[2025-10-13 10:35:40] NAME="CentOS Linux"
[2025-10-13 10:35:40] VERSION="7 (Core)"
[2025-10-13 10:35:40] ID="centos"
[2025-10-13 10:35:40] ID_LIKE="rhel fedora"
[2025-10-13 10:35:40] VERSION_ID="7"
[2025-10-13 10:35:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:35:40] ANSI_COLOR="0;31"
[2025-10-13 10:35:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:35:40] HOME_URL="https://www.centos.org/"
[2025-10-13 10:35:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:35:40] 
[2025-10-13 10:35:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:35:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:35:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:35:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:35:40] 
[2025-10-13 10:35:40] 2025-10-13 14:34:53,483 | INFO     | ***************************************
[2025-10-13 10:35:40] 2025-10-13 14:34:53,986 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 10:35:40] 2025-10-13 14:34:53,999 | INFO     | sufficient remaining disk space (129805320192 B)
[2025-10-13 10:35:40] 2025-10-13 14:34:53,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:35:40] 2025-10-13 14:34:53,999 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:35:40] 2025-10-13 14:34:54,000 | INFO     | update_server=False
[2025-10-13 10:35:40] 2025-10-13 14:34:54,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:35:40] 2025-10-13 14:34:54,202 | INFO     | all job control threads have been joined
[2025-10-13 10:35:40] 2025-10-13 14:34:54,396 | INFO     | all payload control threads have been joined
[2025-10-13 10:35:40] 2025-10-13 14:34:54,480 | INFO     | all data control threads have been joined
[2025-10-13 10:35:40] 2025-10-13 14:34:54,723 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:35:40] 2025-10-13 14:34:54,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:35:40] 2025-10-13 14:34:54,785 | INFO     | aborting loop
[2025-10-13 10:35:40] 2025-10-13 14:34:55,005 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,204 | INFO     | [job] control thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,307 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,402 | INFO     | [payload] control thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,428 | INFO     | [job] validate thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,486 | INFO     | [data] control thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,684 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:55,789 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:56,071 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:56,116 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:56,180 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:56,257 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:56,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:35:40] 2025-10-13 14:34:56,557 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:56,729 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:34:57,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:35:40] 2025-10-13 14:34:57,444 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:35:01,297 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:35:40] 2025-10-13 14:35:24,286 | INFO     | PID=3774128 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 10:35:40] 2025-10-13 14:35:24,286 | INFO     | .. there are 31 such processes running
[2025-10-13 10:35:40] 2025-10-13 14:35:24,288 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:35:40] 2025-10-13 14:35:24,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:35:40] 2025-10-13 14:35:24,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:35:40] 2025-10-13 14:35:34,167 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:35:40] 2025-10-13 14:35:34,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660892047168)>', '<ExcThread(monitor, started 139660550448896)>']
[2025-10-13 10:35:40] 2025-10-13 14:35:35,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:35:40] 2025-10-13 14:35:35,344 | INFO     | [monitor] control thread has ended
[2025-10-13 10:35:40] 2025-10-13 14:35:39,813 | INFO     | all workflow threads have been joined
[2025-10-13 10:35:40] 2025-10-13 14:35:39,814 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:35:40] 2025-10-13 14:35:39,814 | INFO     | traces error code: 0
[2025-10-13 10:35:40] 2025-10-13 14:35:39,815 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:35:40] 2025-10-13 14:35:40,000 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:35:40] 2025-10-13 14:35:40,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:35:40] 2025-10-13 14:35:40,006 [wrapper] pilotpid: 3774128
[2025-10-13 10:35:40] 2025-10-13 14:35:40,009 [wrapper] Pilot exit status: 0
[2025-10-13 10:35:40] 2025-10-13 14:35:40,022 [wrapper] pandaids: 6841186300
[2025-10-13 10:35:40] 2025-10-13 14:35:40,127 [wrapper] cleanup supervisor_pilot 4162620 3774129
[2025-10-13 10:35:40] 2025-10-13 14:35:40,130 [wrapper] Test setup, not cleaning
[2025-10-13 10:35:40] 2025-10-13 14:35:40,133 [wrapper] apfmon messages muted
[2025-10-13 10:35:40] 2025-10-13 14:35:40,136 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:35:40] 2025-10-13 14:35:40,138 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:35:40]  *** Error codes and diagnostics ***
[2025-10-13 10:35:40]     "exeErrorCode": 0,
[2025-10-13 10:35:40]     "exeErrorDiag": "",
[2025-10-13 10:35:40]     "pilotErrorCode": 0,
[2025-10-13 10:35:40]     "pilotErrorDiag": "",
[2025-10-13 10:35:40]  *** Listing of results directory ***
[2025-10-13 10:35:40] total 417916
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 22:00 pilot3.tar.gz
[2025-10-13 10:35:40] -rwx------. 1 boincer umatlas     36292 Oct 12 22:20 runpilot2-wrapper.sh
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 22:20 queuedata.json
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas       100 Oct 13 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:35:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 09:00 run_atlas
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas       105 Oct 13 09:00 job.xml
[2025-10-13 10:35:40] -rw-r--r--. 2 boincer umatlas 223491191 Oct 13 09:00 EVNT.46676267._002396.pool.root.1
[2025-10-13 10:35:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 09:00 start_atlas.sh
[2025-10-13 10:35:40] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 09:00 shared
[2025-10-13 10:35:40] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 09:00 input.tar.gz
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas         0 Oct 13 09:00 boinc_lockfile
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 09:00 pandaJob.out
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas    975512 Oct 13 09:01 agis_schedconf.cvmfs.json
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas   1560580 Oct 13 09:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:35:40] drwx------. 5 boincer umatlas      4096 Oct 13 09:01 pilot3
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas      6937 Oct 13 10:29 init_data.xml
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas       530 Oct 13 10:34 boinc_task_state.xml
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas 198295080 Oct 13 10:34 HITS.46676269._094863.pool.root.1
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas      1033 Oct 13 10:34 memory_monitor_summary.json
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas    340848 Oct 13 10:34 log.46676269._094863.job.log.tgz.1
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas      7771 Oct 13 10:34 heartbeat.json
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas        95 Oct 13 10:35 pilot_heartbeat.json
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 10:35 boinc_mmap_file
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas        27 Oct 13 10:35 wrapper_checkpoint.txt
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas      4825 Oct 13 10:35 pilotlog.txt
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas    788612 Oct 13 10:35 log.46676269._094863.job.log.1
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas       357 Oct 13 10:35 output.list
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas       620 Oct 13 10:35 runtime_log
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas   1146880 Oct 13 10:35 result.tar.gz
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 10:35 runtime_log.err
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas       650 Oct 13 10:35 dcvLDmiLNS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKWVMDmIgEAem.diag
[2025-10-13 10:35:40] -rw-r--r--. 1 boincer umatlas     21941 Oct 13 10:35 stderr.txt
[2025-10-13 10:35:40] HITS file was successfully produced:
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas 198295080 Oct 13 10:34 shared/HITS.pool.root.1
[2025-10-13 10:35:40]  *** Contents of shared directory: ***
[2025-10-13 10:35:40] total 413604
[2025-10-13 10:35:40] -rw-r--r--. 2 boincer umatlas 223491191 Oct 13 09:00 ATLAS.root_0
[2025-10-13 10:35:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 09:00 start_atlas.sh
[2025-10-13 10:35:40] -rw-r--r--. 2 boincer umatlas    569678 Oct 13 09:00 input.tar.gz
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas 198295080 Oct 13 10:34 HITS.pool.root.1
[2025-10-13 10:35:40] -rw-------. 1 boincer umatlas   1146880 Oct 13 10:35 result.tar.gz
10:35:42 (3770300): run_atlas exited; CPU time 34280.714093
10:35:42 (3770300): called boinc_finish(0)

</stderr_txt>
]]>

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