Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:39:50 (17240): wrapper (7.7.26015): starting
08:39:50 (17240): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 08:39:50] Arguments: --nthreads 8
[2025-10-13 08:39:50] Threads: 8
[2025-10-13 08:39:50] Checking for CVMFS
[2025-10-13 08:39:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:39:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:39:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:39:51] 2.11.2.0 1598 217654 127208 151661 3 59 11797188 20275200 917 130560 1 224632501 99.992 11753930 11210 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 08:39:51] CVMFS is ok
[2025-10-13 08:39:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:39:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:39:51] Further information can be found at the LHC@home message board.
[2025-10-13 08:39:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:39:51] Checking for apptainer binary...
[2025-10-13 08:39:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:39:51] Running /usr/bin/apptainer --version
[2025-10-13 08:39:51] apptainer version 1.3.2-1.el7
[2025-10-13 08:39:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:39:52] c-205-36.aglt2.org
[2025-10-13 08:39:52] apptainer works
[2025-10-13 08:39:52] Set ATHENA_PROC_NUMBER=8
[2025-10-13 08:39:52] Set ATHENA_CORE_NUMBER=8
[2025-10-13 08:39:52] Starting ATLAS job with PandaID=6838067878
[2025-10-13 08:39:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:45:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:45:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 09:45:15]  replicas=None
[2025-10-13 09:45:15]  scope=mc23_13p6TeV
[2025-10-13 09:45:15]  status=None
[2025-10-13 09:45:15]  status_code=0
[2025-10-13 09:45:15]  storage_token=
[2025-10-13 09:45:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6838067878/log.46676269._051129.job.log.tgz.1
[2025-10-13 09:45:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/e3/log.46676269._051129.job.log.tgz.1
[2025-10-13 09:45:15]  workdir=None
[2025-10-13 09:45:15] ]
[2025-10-13 09:45:15] 2025-10-13 13:44:11,746 | INFO     | transferring file log.46676269._051129.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6838067878/log.46676269._051129.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 09:45:15] 2025-10-13 13:44:11,746 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6838067878/log.46676269._051129.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._051129.job
[2025-10-13 09:45:15] 2025-10-13 13:44:11,766 | INFO     | adding to output.list: log.46676269._051129.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/e3/log.46676269._051129.job.log.tg
[2025-10-13 09:45:15] 2025-10-13 13:44:11,766 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 09:45:15] 2025-10-13 13:44:11,767 | INFO     | summary of transferred files:
[2025-10-13 09:45:15] 2025-10-13 13:44:11,767 | INFO     |  -- lfn=log.46676269._051129.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:45:15] 2025-10-13 13:44:11,767 | INFO     | stage-out finished correctly
[2025-10-13 09:45:15] 2025-10-13 13:44:11,828 | INFO     | time since job start (3847s) is within the limit (172800.0s)
[2025-10-13 09:45:15] 2025-10-13 13:44:13,058 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:45:15] 2025-10-13 13:44:13,135 | INFO     | job 6838067878 has state=finished
[2025-10-13 09:45:15] 2025-10-13 13:44:13,136 | INFO     | preparing for final server update for job 6838067878 in state='finished'
[2025-10-13 09:45:15] 2025-10-13 13:44:13,136 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:45:15] 2025-10-13 13:44:13,136 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:45:15] 2025-10-13 13:44:13,137 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:45:15] 2025-10-13 13:44:13,137 | INFO     | job 6838067878 has finished - writing final server update
[2025-10-13 09:45:15] 2025-10-13 13:44:13,137 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:45:15] 2025-10-13 13:44:13,138 | INFO     | executing command: lscpu
[2025-10-13 09:45:15] 2025-10-13 13:44:13,169 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:45:15] 2025-10-13 13:44:13,834 | INFO     | time since job start (3849s) is within the limit (172800.0s)
[2025-10-13 09:45:15] 2025-10-13 13:44:14,536 | WARNING  | process 27428 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 09:45:15] 2025-10-13 13:44:14,536 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838067878/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:45:15] 2025-10-13 13:44:14,611 | INFO     | number of running child processes to parent process 27428: 1
[2025-10-13 09:45:15] 2025-10-13 13:44:14,611 | INFO     | maximum number of monitored processes: 6
[2025-10-13 09:45:15] 2025-10-13 13:44:15,841 | INFO     | time since job start (3851s) is within the limit (172800.0s)
[2025-10-13 09:45:15] 2025-10-13 13:44:17,114 | INFO     | monitor loop #294: job 0:6838067878 is in state 'finished'
[2025-10-13 09:45:15] 2025-10-13 13:44:17,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:45:15] 2025-10-13 13:44:17,843 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 09:45:15] 2025-10-13 13:44:17,846 | INFO     | time since job start (3853s) is within the limit (172800.0s)
[2025-10-13 09:45:15] 2025-10-13 13:44:17,847 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1281.0969374999997
[2025-10-13 09:45:15] 2025-10-13 13:44:17,851 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6838067878/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:45:15] 2025-10-13 13:44:17,852 | INFO     | extracted standard info from prmon json
[2025-10-13 09:45:15] 2025-10-13 13:44:17,852 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:45:15] 2025-10-13 13:44:17,852 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:45:15] 2025-10-13 13:44:17,853 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:45:15] 2025-10-13 13:44:17,853 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:45:15] 2025-10-13 13:44:17,855 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:45:15] 2025-10-13 13:44:17,855 | INFO     | sum of square deviations: 54438230.0
[2025-10-13 09:45:15] 2025-10-13 13:44:17,855 | INFO     | sum of deviations: -5785917130.5
[2025-10-13 09:45:15] 2025-10-13 13:44:17,856 | INFO     | mean x: 1760361211.5
[2025-10-13 09:45:15] 2025-10-13 13:44:17,856 | INFO     | mean y: 2698127.7321428573
[2025-10-13 09:45:15] 2025-10-13 13:44:17,856 | INFO     | -- intersect: 187101067958.74216
[2025-10-13 09:45:15] 2025-10-13 13:44:17,856 | INFO     | intersect: 187101067958.74216
[2025-10-13 09:45:15] 2025-10-13 13:44:17,856 | INFO     | chi2: 0.04829097108585916
[2025-10-13 09:45:15] 2025-10-13 13:44:17,856 | INFO     | -- intersect: 187101067958.74216
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | current memory leak: -106.28 B/s (using 56 data points, chi2=0.05)
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | could have reported an average CPU frequency of 1938 MHz (6 samples)
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | ..............................
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | . Timing measurements:
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | . get job = 0 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | . initial setup = 2 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,857 | INFO     | . payload setup = 5 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,858 | INFO     | . stage-in = 0 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,858 | INFO     | . payload execution = 3822 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,858 | INFO     | . stage-out = 0 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,858 | INFO     | . log creation = 0 s
[2025-10-13 09:45:15] 2025-10-13 13:44:17,858 | INFO     | ..............................
[2025-10-13 09:45:15] 2025-10-13 13:44:18,354 | INFO     | 
[2025-10-13 09:45:15] 2025-10-13 13:44:18,354 | INFO     | job summary report
[2025-10-13 09:45:15] 2025-10-13 13:44:18,354 | INFO     | --------------------------------------------------
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | PanDA job id: 6838067878
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | task id: 46676269
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | errors: (none)
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | pilot state: finished 
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | transexitcode: 0
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | exeerrorcode: 0
[2025-10-13 09:45:15] 2025-10-13 13:44:18,355 | INFO     | exeerrordiag: 
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | exitcode: 0
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | exitmsg: OK
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | cpuconsumptiontime: 28158 s
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | nevents: 400
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | neventsw: 0
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | pid: 27428
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | pgrp: 27428
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | corecount: 8
[2025-10-13 09:45:15] 2025-10-13 13:44:18,356 | INFO     | event service: False
[2025-10-13 09:45:15] 2025-10-13 13:44:18,357 | INFO     | sizes: {0: 2348858, 1: 2348858, 5: 2349148, 11: 2349204, 3832: 2375146, 3833: 2384144, 3834: 2384328, 3839: 2384522}
[2025-10-13 09:45:15] 2025-10-13 13:44:18,357 | INFO     | --------------------------------------------------
[2025-10-13 09:45:15] 2025-10-13 13:44:18,357 | INFO     | 
[2025-10-13 09:45:15] 2025-10-13 13:44:18,357 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 09:45:15] 2025-10-13 13:44:18,380 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,380 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,380 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,380 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,382 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:45:15] 2025-10-13 13:44:18,383 | INFO     | job 6838067878 has completed (purged errors)
[2025-10-13 09:45:15] 2025-10-13 13:44:18,383 | INFO     | overall cleanup function is called
[2025-10-13 09:45:15] 2025-10-13 13:44:19,391 | INFO     | --- collectZombieJob: --- 10, [27428]
[2025-10-13 09:45:15] 2025-10-13 13:44:19,391 | INFO     | zombie collector waiting for pid 27428
[2025-10-13 09:45:15] 2025-10-13 13:44:19,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:45:15] 2025-10-13 13:44:19,392 | INFO     | collected zombie processes
[2025-10-13 09:45:15] 2025-10-13 13:44:19,392 | INFO     | will attempt to kill all subprocesses of pid=27428
[2025-10-13 09:45:15] 2025-10-13 13:44:19,500 | INFO     | process IDs to be killed: [27428] (in reverse order)
[2025-10-13 09:45:15] 2025-10-13 13:44:19,557 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:45:15] 2025-10-13 13:44:19,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:45:15] 2025-10-13 13:44:19,561 | INFO     | did not find any defunct processes belonging to 27428
[2025-10-13 09:45:15] 2025-10-13 13:44:19,564 | INFO     | did not find any defunct processes belonging to 27428
[2025-10-13 09:45:15] 2025-10-13 13:44:19,565 | INFO     | ready for new job
[2025-10-13 09:45:15] 2025-10-13 13:44:19,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:45:15] 2025-10-13 13:44:19,567 | INFO     | ***************************************
[2025-10-13 09:45:15] 2025-10-13 13:44:19,567 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:45:15] 2025-10-13 13:44:19,567 | INFO     | ***************************************
[2025-10-13 09:45:15] 2025-10-13 13:44:19,567 | INFO     | 
[2025-10-13 09:45:15] 2025-10-13 13:44:19,568 | INFO     | architecture information:
[2025-10-13 09:45:15] 2025-10-13 13:44:19,569 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:45:15] 2025-10-13 13:44:19,582 | INFO     | cat /etc/os-release:
[2025-10-13 09:45:15] NAME="CentOS Linux"
[2025-10-13 09:45:15] VERSION="7 (Core)"
[2025-10-13 09:45:15] ID="centos"
[2025-10-13 09:45:15] ID_LIKE="rhel fedora"
[2025-10-13 09:45:15] VERSION_ID="7"
[2025-10-13 09:45:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:45:15] ANSI_COLOR="0;31"
[2025-10-13 09:45:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:45:15] HOME_URL="https://www.centos.org/"
[2025-10-13 09:45:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:45:15] 
[2025-10-13 09:45:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:45:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:45:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:45:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:45:15] 
[2025-10-13 09:45:15] 2025-10-13 13:44:19,582 | INFO     | ***************************************
[2025-10-13 09:45:15] 2025-10-13 13:44:20,085 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 09:45:15] 2025-10-13 13:44:20,101 | INFO     | sufficient remaining disk space (33279705088 B)
[2025-10-13 09:45:15] 2025-10-13 13:44:20,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:45:15] 2025-10-13 13:44:20,102 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:45:15] 2025-10-13 13:44:20,102 | INFO     | update_server=False
[2025-10-13 09:45:15] 2025-10-13 13:44:20,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:45:15] 2025-10-13 13:44:20,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:45:15] 2025-10-13 13:44:20,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:45:15] 2025-10-13 13:44:20,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:45:15] 2025-10-13 13:44:20,618 | INFO     | aborting loop
[2025-10-13 09:45:15] 2025-10-13 13:44:21,042 | INFO     | all data control threads have been joined
[2025-10-13 09:45:15] 2025-10-13 13:44:21,108 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:21,294 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:21,321 | INFO     | all payload control threads have been joined
[2025-10-13 09:45:15] 2025-10-13 13:44:21,509 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:21,533 | INFO     | all job control threads have been joined
[2025-10-13 09:45:15] 2025-10-13 13:44:21,623 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:21,728 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,046 | INFO     | [data] control thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,109 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,164 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,327 | INFO     | [payload] control thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,505 | INFO     | [job] validate thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,535 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,538 | INFO     | [job] control thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,593 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,607 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:22,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:45:15] 2025-10-13 13:44:23,952 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:24,106 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:45:15] 2025-10-13 13:44:51,063 | INFO     | PID=20915 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 09:45:15] 2025-10-13 13:44:51,064 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:45:15] 2025-10-13 13:44:51,064 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:45:15] 2025-10-13 13:44:51,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:45:15] 2025-10-13 13:45:09,170 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:45:15] 2025-10-13 13:45:10,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139950479107904)>', '<ExcThread(monitor, started 139950192305920)>']
[2025-10-13 09:45:15] 2025-10-13 13:45:11,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:45:15] 2025-10-13 13:45:11,154 | INFO     | [monitor] control thread has ended
[2025-10-13 09:45:15] 2025-10-13 13:45:15,181 | INFO     | all workflow threads have been joined
[2025-10-13 09:45:15] 2025-10-13 13:45:15,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:45:15] 2025-10-13 13:45:15,182 | INFO     | traces error code: 0
[2025-10-13 09:45:15] 2025-10-13 13:45:15,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:45:15] 2025-10-13 13:45:15,282 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:45:15] 2025-10-13 13:45:15,286 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:45:15] 2025-10-13 13:45:15,289 [wrapper] pilotpid: 20915
[2025-10-13 09:45:15] 2025-10-13 13:45:15,293 [wrapper] Pilot exit status: 0
[2025-10-13 09:45:15] 2025-10-13 13:45:15,305 [wrapper] pandaids: 6838067878
[2025-10-13 09:45:15] 2025-10-13 13:45:15,352 [wrapper] cleanup supervisor_pilot 21831 20916
[2025-10-13 09:45:15] 2025-10-13 13:45:15,356 [wrapper] Test setup, not cleaning
[2025-10-13 09:45:15] 2025-10-13 13:45:15,360 [wrapper] apfmon messages muted
[2025-10-13 09:45:15] 2025-10-13 13:45:15,364 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:45:15] 2025-10-13 13:45:15,367 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:45:15]  *** Error codes and diagnostics ***
[2025-10-13 09:45:15]     "exeErrorCode": 0,
[2025-10-13 09:45:15]     "exeErrorDiag": "",
[2025-10-13 09:45:15]     "pilotErrorCode": 0,
[2025-10-13 09:45:15]     "pilotErrorDiag": "",
[2025-10-13 09:45:15]  *** Listing of results directory ***
[2025-10-13 09:45:15] total 410844
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 23:42 pilot3.tar.gz
[2025-10-13 09:45:15] -rwx------ 1 boincer umatlas     36292 Oct 11 00:10 runpilot2-wrapper.sh
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 00:10 queuedata.json
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas       100 Oct 13 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:45:15] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 08:39 run_atlas
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas       105 Oct 13 08:39 job.xml
[2025-10-13 09:45:15] -rw-r--r-- 2 boincer umatlas 219595724 Oct 13 08:39 EVNT.46676267._002057.pool.root.1
[2025-10-13 09:45:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 08:39 start_atlas.sh
[2025-10-13 09:45:15] drwxrwx--x 2 boincer umatlas      4096 Oct 13 08:39 shared
[2025-10-13 09:45:15] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 08:39 input.tar.gz
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas         0 Oct 13 08:39 boinc_lockfile
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas      2551 Oct 13 08:39 pandaJob.out
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas    972497 Oct 13 08:40 agis_schedconf.cvmfs.json
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas   1560580 Oct 13 08:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:45:15] drwx------ 5 boincer umatlas      4096 Oct 13 08:40 pilot3
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas      6135 Oct 13 09:39 init_data.xml
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas 195406445 Oct 13 09:43 HITS.46676269._051129.pool.root.1
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas       529 Oct 13 09:44 boinc_task_state.xml
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas      1043 Oct 13 09:44 memory_monitor_summary.json
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas    320541 Oct 13 09:44 log.46676269._051129.job.log.tgz.1
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas      7841 Oct 13 09:44 heartbeat.json
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas        95 Oct 13 09:44 pilot_heartbeat.json
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 09:45 boinc_mmap_file
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas        27 Oct 13 09:45 wrapper_checkpoint.txt
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas      4746 Oct 13 09:45 pilotlog.txt
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas    577738 Oct 13 09:45 log.46676269._051129.job.log.1
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas       357 Oct 13 09:45 output.list
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas       620 Oct 13 09:45 runtime_log
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas    921600 Oct 13 09:45 result.tar.gz
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 09:45 runtime_log.err
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas       657 Oct 13 09:45 bqhMDmK7fR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmp9QMDmXXUaZn.diag
[2025-10-13 09:45:15] -rw-r--r-- 1 boincer umatlas     21886 Oct 13 09:45 stderr.txt
[2025-10-13 09:45:15] HITS file was successfully produced:
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas 195406445 Oct 13 09:43 shared/HITS.pool.root.1
[2025-10-13 09:45:15]  *** Contents of shared directory: ***
[2025-10-13 09:45:15] total 406760
[2025-10-13 09:45:15] -rw-r--r-- 2 boincer umatlas 219595724 Oct 13 08:39 ATLAS.root_0
[2025-10-13 09:45:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 08:39 start_atlas.sh
[2025-10-13 09:45:15] -rw-r--r-- 2 boincer umatlas    569682 Oct 13 08:39 input.tar.gz
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas 195406445 Oct 13 09:43 HITS.pool.root.1
[2025-10-13 09:45:15] -rw------- 1 boincer umatlas    921600 Oct 13 09:45 result.tar.gz
09:45:16 (17240): run_atlas exited; CPU time 28139.324187
09:45:16 (17240): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN