Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:27:32 (24095): wrapper (7.7.26015): starting
08:27:32 (24095): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 08:27:32] Arguments: --nthreads 8
[2025-10-13 08:27:32] Threads: 8
[2025-10-13 08:27:32] Checking for CVMFS
[2025-10-13 08:27:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:27:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:27:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:27:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:27:33] 2.11.2.0 17210 54306 129996 151661 3 60 16946095 18432001 938 130560 0 50077315 99.976 2438098 35096 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 08:27:33] CVMFS is ok
[2025-10-13 08:27:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:27:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:27:33] Further information can be found at the LHC@home message board.
[2025-10-13 08:27:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:27:33] Checking for apptainer binary...
[2025-10-13 08:27:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:27:33] Running /usr/bin/apptainer --version
[2025-10-13 08:27:33] apptainer version 1.3.2-1.el7
[2025-10-13 08:27:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:27:33] c-206-14.aglt2.org
[2025-10-13 08:27:33] apptainer works
[2025-10-13 08:27:33] Set ATHENA_PROC_NUMBER=8
[2025-10-13 08:27:33] Set ATHENA_CORE_NUMBER=8
[2025-10-13 08:27:33] Starting ATLAS job with PandaID=6838117366
[2025-10-13 08:27:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 11:05:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 11:05:02] 2025-10-13 15:04:11,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 11:05:02] 2025-10-13 15:04:11,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 11:05:02] 2025-10-13 15:04:11,348 | INFO     | fitting pss+swap vs Time
[2025-10-13 11:05:02] 2025-10-13 15:04:11,349 | INFO     | sum of square deviations: 1132458442.5
[2025-10-13 11:05:02] 2025-10-13 15:04:11,350 | INFO     | sum of deviations: -1743672921.999998
[2025-10-13 11:05:02] 2025-10-13 15:04:11,350 | INFO     | mean x: 1760363152.5
[2025-10-13 11:05:02] 2025-10-13 15:04:11,350 | INFO     | mean y: 2476818.285714286
[2025-10-13 11:05:02] 2025-10-13 15:04:11,350 | INFO     | -- intersect: 2712949403.155691
[2025-10-13 11:05:02] 2025-10-13 15:04:11,350 | INFO     | intersect: 2712949403.155691
[2025-10-13 11:05:02] 2025-10-13 15:04:11,351 | INFO     | chi2: 2.130999133771861
[2025-10-13 11:05:02] 2025-10-13 15:04:11,351 | INFO     | sum of square deviations: 1025693650.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,352 | INFO     | sum of deviations: 8868789024.000017
[2025-10-13 11:05:02] 2025-10-13 15:04:11,353 | INFO     | mean x: 1760363000.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,353 | INFO     | mean y: 2491577.677852349
[2025-10-13 11:05:02] 2025-10-13 15:04:11,353 | INFO     | -- intersect: -15218708292.922636
[2025-10-13 11:05:02] 2025-10-13 15:04:11,353 | INFO     | intersect: -15218708292.922636
[2025-10-13 11:05:02] 2025-10-13 15:04:11,354 | INFO     | chi2: 1.2789112378609058
[2025-10-13 11:05:02] 2025-10-13 15:04:11,354 | INFO     | current chi2=1.2789112378609058 (change=39.98537035548966 %)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,354 | INFO     | sum of square deviations: 925859220.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,355 | INFO     | sum of deviations: 8658806314.49999
[2025-10-13 11:05:02] 2025-10-13 15:04:11,355 | INFO     | mean x: 1760362847.5
[2025-10-13 11:05:02] 2025-10-13 15:04:11,356 | INFO     | mean y: 2491256.8958333335
[2025-10-13 11:05:02] 2025-10-13 15:04:11,356 | INFO     | -- intersect: -16460747009.224348
[2025-10-13 11:05:02] 2025-10-13 15:04:11,356 | INFO     | intersect: -16460747009.224348
[2025-10-13 11:05:02] 2025-10-13 15:04:11,356 | INFO     | chi2: 1.280078519166596
[2025-10-13 11:05:02] 2025-10-13 15:04:11,357 | INFO     | current chi2=1.280078519166596 (change=-0.09127148711607215 %)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,357 | INFO     | right removable region: 143
[2025-10-13 11:05:02] 2025-10-13 15:04:11,357 | INFO     | sum of square deviations: 1025693650.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,358 | INFO     | sum of deviations: -21116654504.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,358 | INFO     | mean x: 1760363305.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,359 | INFO     | mean y: 2504069.1946308725
[2025-10-13 11:05:02] 2025-10-13 15:04:11,359 | INFO     | -- intersect: 36244303668.13393
[2025-10-13 11:05:02] 2025-10-13 15:04:11,359 | INFO     | intersect: 36244303668.13393
[2025-10-13 11:05:02] 2025-10-13 15:04:11,359 | INFO     | chi2: 0.9598907984120649
[2025-10-13 11:05:02] 2025-10-13 15:04:11,360 | INFO     | current chi2=0.9598907984120649 (change=54.955833477366944 %)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,360 | INFO     | sum of square deviations: 925859220.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,361 | INFO     | sum of deviations: -24299899701.5
[2025-10-13 11:05:02] 2025-10-13 15:04:11,361 | INFO     | mean x: 1760363457.5
[2025-10-13 11:05:02] 2025-10-13 15:04:11,361 | INFO     | mean y: 2508856.090277778
[2025-10-13 11:05:02] 2025-10-13 15:04:11,362 | INFO     | -- intersect: 46204625259.31166
[2025-10-13 11:05:02] 2025-10-13 15:04:11,362 | INFO     | intersect: 46204625259.31166
[2025-10-13 11:05:02] 2025-10-13 15:04:11,362 | INFO     | chi2: 0.9131302950289512
[2025-10-13 11:05:02] 2025-10-13 15:04:11,362 | INFO     | current chi2=0.9131302950289512 (change=4.8714399034212095 %)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,363 | INFO     | left removable region: 20
[2025-10-13 11:05:02] 2025-10-13 15:04:11,363 | INFO     | sum of square deviations: 576985702.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,364 | INFO     | sum of deviations: -10370610975.999996
[2025-10-13 11:05:02] 2025-10-13 15:04:11,364 | INFO     | mean x: 1760363427.0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,364 | INFO     | mean y: 2521593.837398374
[2025-10-13 11:05:02] 2025-10-13 15:04:11,364 | INFO     | -- intersect: 31642897108.368202
[2025-10-13 11:05:02] 2025-10-13 15:04:11,365 | INFO     | intersect: 31642897108.368202
[2025-10-13 11:05:02] 2025-10-13 15:04:11,365 | INFO     | chi2: 0.030044850109219153
[2025-10-13 11:05:02] 2025-10-13 15:04:11,365 | INFO     | -- intersect: 31642897108.368202
[2025-10-13 11:05:02] 2025-10-13 15:04:11,365 | INFO     | current memory leak: -17.97 B/s (using 123 data points, chi2=0.03)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,366 | INFO     | could have reported an average CPU frequency of 2350 MHz (9 samples)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,366 | INFO     | ..............................
[2025-10-13 11:05:02] 2025-10-13 15:04:11,366 | INFO     | . Timing measurements:
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . get job = 0 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . initial setup = 2 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . payload setup = 4 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . stage-in = 0 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . payload execution = 9358 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . stage-out = 0 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | . log creation = 0 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,367 | INFO     | ..............................
[2025-10-13 11:05:02] 2025-10-13 15:04:11,451 | INFO     | 
[2025-10-13 11:05:02] 2025-10-13 15:04:11,452 | INFO     | job summary report
[2025-10-13 11:05:02] 2025-10-13 15:04:11,452 | INFO     | --------------------------------------------------
[2025-10-13 11:05:02] 2025-10-13 15:04:11,452 | INFO     | PanDA job id: 6838117366
[2025-10-13 11:05:02] 2025-10-13 15:04:11,452 | INFO     | task id: 46676269
[2025-10-13 11:05:02] 2025-10-13 15:04:11,452 | INFO     | errors: (none)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,453 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 11:05:02] 2025-10-13 15:04:11,453 | INFO     | pilot state: finished 
[2025-10-13 11:05:02] 2025-10-13 15:04:11,453 | INFO     | transexitcode: 0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,453 | INFO     | exeerrorcode: 0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,453 | INFO     | exeerrordiag: 
[2025-10-13 11:05:02] 2025-10-13 15:04:11,453 | INFO     | exitcode: 0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,454 | INFO     | exitmsg: OK
[2025-10-13 11:05:02] 2025-10-13 15:04:11,454 | INFO     | cpuconsumptiontime: 70479 s
[2025-10-13 11:05:02] 2025-10-13 15:04:11,454 | INFO     | nevents: 400
[2025-10-13 11:05:02] 2025-10-13 15:04:11,454 | INFO     | neventsw: 0
[2025-10-13 11:05:02] 2025-10-13 15:04:11,454 | INFO     | pid: 15219
[2025-10-13 11:05:02] 2025-10-13 15:04:11,454 | INFO     | pgrp: 15219
[2025-10-13 11:05:02] 2025-10-13 15:04:11,455 | INFO     | corecount: 8
[2025-10-13 11:05:02] 2025-10-13 15:04:11,455 | INFO     | event service: False
[2025-10-13 11:05:02] 2025-10-13 15:04:11,455 | INFO     | sizes: {0: 2348856, 3: 2349118, 11: 2349146, 9365: 2377591, 9366: 2377590, 9367: 2386644, 9369: 2386828, 9374: 2387086}
[2025-10-13 11:05:02] 2025-10-13 15:04:11,455 | INFO     | --------------------------------------------------
[2025-10-13 11:05:02] 2025-10-13 15:04:11,455 | INFO     | 
[2025-10-13 11:05:02] 2025-10-13 15:04:11,456 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 11:05:02] 2025-10-13 15:04:11,471 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,471 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,471 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,472 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,473 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,474 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,474 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,474 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 11:05:02] 2025-10-13 15:04:11,475 | INFO     | job 6838117366 has completed (purged errors)
[2025-10-13 11:05:02] 2025-10-13 15:04:11,475 | INFO     | overall cleanup function is called
[2025-10-13 11:05:02] 2025-10-13 15:04:12,483 | INFO     | --- collectZombieJob: --- 10, [15219]
[2025-10-13 11:05:02] 2025-10-13 15:04:12,484 | INFO     | zombie collector waiting for pid 15219
[2025-10-13 11:05:02] 2025-10-13 15:04:12,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 11:05:02] 2025-10-13 15:04:12,484 | INFO     | collected zombie processes
[2025-10-13 11:05:02] 2025-10-13 15:04:12,484 | INFO     | will attempt to kill all subprocesses of pid=15219
[2025-10-13 11:05:02] 2025-10-13 15:04:12,596 | INFO     | process IDs to be killed: [15219] (in reverse order)
[2025-10-13 11:05:02] 2025-10-13 15:04:12,633 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 11:05:02] 2025-10-13 15:04:12,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 11:05:02] 2025-10-13 15:04:12,635 | INFO     | did not find any defunct processes belonging to 15219
[2025-10-13 11:05:02] 2025-10-13 15:04:12,638 | INFO     | did not find any defunct processes belonging to 15219
[2025-10-13 11:05:02] 2025-10-13 15:04:12,638 | INFO     | ready for new job
[2025-10-13 11:05:02] 2025-10-13 15:04:12,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 11:05:02] 2025-10-13 15:04:12,639 | INFO     | ***************************************
[2025-10-13 11:05:02] 2025-10-13 15:04:12,640 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 11:05:02] 2025-10-13 15:04:12,640 | INFO     | ***************************************
[2025-10-13 11:05:02] 2025-10-13 15:04:12,640 | INFO     | 
[2025-10-13 11:05:02] 2025-10-13 15:04:12,641 | INFO     | architecture information:
[2025-10-13 11:05:02] 2025-10-13 15:04:12,641 | INFO     | executing command: cat /etc/os-release
[2025-10-13 11:05:02] 2025-10-13 15:04:12,653 | INFO     | cat /etc/os-release:
[2025-10-13 11:05:02] NAME="CentOS Linux"
[2025-10-13 11:05:02] VERSION="7 (Core)"
[2025-10-13 11:05:02] ID="centos"
[2025-10-13 11:05:02] ID_LIKE="rhel fedora"
[2025-10-13 11:05:02] VERSION_ID="7"
[2025-10-13 11:05:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 11:05:02] ANSI_COLOR="0;31"
[2025-10-13 11:05:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 11:05:02] HOME_URL="https://www.centos.org/"
[2025-10-13 11:05:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 11:05:02] 
[2025-10-13 11:05:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 11:05:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 11:05:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 11:05:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 11:05:02] 
[2025-10-13 11:05:02] 2025-10-13 15:04:12,653 | INFO     | ***************************************
[2025-10-13 11:05:02] 2025-10-13 15:04:13,156 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 11:05:02] 2025-10-13 15:04:13,167 | INFO     | sufficient remaining disk space (28716302336 B)
[2025-10-13 11:05:02] 2025-10-13 15:04:13,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 11:05:02] 2025-10-13 15:04:13,168 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 11:05:02] 2025-10-13 15:04:13,168 | INFO     | update_server=False
[2025-10-13 11:05:02] 2025-10-13 15:04:13,168 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 11:05:02] 2025-10-13 15:04:13,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 11:05:02] 2025-10-13 15:04:13,168 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:05:02] 2025-10-13 15:04:13,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 11:05:02] 2025-10-13 15:04:13,795 | INFO     | all data control threads have been joined
[2025-10-13 11:05:02] 2025-10-13 15:04:13,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 11:05:02] 2025-10-13 15:04:13,960 | INFO     | aborting loop
[2025-10-13 11:05:02] 2025-10-13 15:04:14,170 | INFO     | [job] retrieve thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:14,174 | INFO     | [job] queue monitor thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:14,479 | INFO     | [payload] validate_post thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:14,513 | INFO     | all payload control threads have been joined
[2025-10-13 11:05:02] 2025-10-13 15:04:14,577 | INFO     | all job control threads have been joined
[2025-10-13 11:05:02] 2025-10-13 15:04:14,801 | INFO     | [data] control thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:14,863 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:14,965 | INFO     | [job] job monitor thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,174 | INFO     | [data] copytool_out thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,437 | INFO     | [payload] failed_post thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,518 | INFO     | [payload] control thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,554 | INFO     | [data] copytool_in thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,562 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,564 | INFO     | [job] validate thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,574 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:15,583 | INFO     | [job] control thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:17,224 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:23,845 | INFO     | job.realtimelogging is not enabled
[2025-10-13 11:05:02] 2025-10-13 15:04:24,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 11:05:02] 2025-10-13 15:04:43,815 | INFO     | PID=29834 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 11:05:02] 2025-10-13 15:04:43,815 | INFO     | .. there are 2 such processes running
[2025-10-13 11:05:02] 2025-10-13 15:04:43,815 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 11:05:02] 2025-10-13 15:04:43,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 11:05:02] 2025-10-13 15:04:43,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 11:05:02] 2025-10-13 15:04:56,904 | INFO     | [monitor] cgroup control has ended
[2025-10-13 11:05:02] 2025-10-13 15:04:57,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793649829696)>', '<ExcThread(monitor, started 139792998201088)>']
[2025-10-13 11:05:02] 2025-10-13 15:04:57,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 11:05:02] 2025-10-13 15:04:57,881 | INFO     | [monitor] control thread has ended
[2025-10-13 11:05:02] 2025-10-13 15:05:02,468 | INFO     | all workflow threads have been joined
[2025-10-13 11:05:02] 2025-10-13 15:05:02,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 11:05:02] 2025-10-13 15:05:02,469 | INFO     | traces error code: 0
[2025-10-13 11:05:02] 2025-10-13 15:05:02,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 11:05:02] 2025-10-13 15:05:02,559 [wrapper] ==== pilot stdout END ====
[2025-10-13 11:05:02] 2025-10-13 15:05:02,561 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 11:05:02] 2025-10-13 15:05:02,563 [wrapper] pilotpid: 29834
[2025-10-13 11:05:02] 2025-10-13 15:05:02,566 [wrapper] Pilot exit status: 0
[2025-10-13 11:05:02] 2025-10-13 15:05:02,573 [wrapper] pandaids: 6838117366
[2025-10-13 11:05:02] 2025-10-13 15:05:02,600 [wrapper] cleanup supervisor_pilot 28246 29835
[2025-10-13 11:05:02] 2025-10-13 15:05:02,603 [wrapper] Test setup, not cleaning
[2025-10-13 11:05:02] 2025-10-13 15:05:02,605 [wrapper] apfmon messages muted
[2025-10-13 11:05:02] 2025-10-13 15:05:02,607 [wrapper] ==== wrapper stdout END ====
[2025-10-13 11:05:02] 2025-10-13 15:05:02,610 [wrapper] ==== wrapper stderr END ====
[2025-10-13 11:05:02]  *** Error codes and diagnostics ***
[2025-10-13 11:05:02]     "exeErrorCode": 0,
[2025-10-13 11:05:02]     "exeErrorDiag": "",
[2025-10-13 11:05:02]     "pilotErrorCode": 0,
[2025-10-13 11:05:02]     "pilotErrorDiag": "",
[2025-10-13 11:05:02]  *** Listing of results directory ***
[2025-10-13 11:05:02] total 412152
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 01:13 pilot3.tar.gz
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 01:25 queuedata.json
[2025-10-13 11:05:02] -rwx------ 1 boincer umatlas     36292 Oct 11 01:26 runpilot2-wrapper.sh
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas       100 Oct 13 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 11:05:02] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 08:27 run_atlas
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas       105 Oct 13 08:27 job.xml
[2025-10-13 11:05:02] -rw-r--r-- 2 boincer umatlas 221583596 Oct 13 08:27 EVNT.46676267._002088.pool.root.1
[2025-10-13 11:05:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 08:27 start_atlas.sh
[2025-10-13 11:05:02] drwxrwx--x 2 boincer umatlas      4096 Oct 13 08:27 shared
[2025-10-13 11:05:02] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 08:27 input.tar.gz
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas         0 Oct 13 08:27 boinc_lockfile
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 08:27 pandaJob.out
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas    972497 Oct 13 08:27 agis_schedconf.cvmfs.json
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas   1560580 Oct 13 08:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 11:05:02] drwx------ 5 boincer umatlas      4096 Oct 13 08:27 pilot3
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 11:00 init_data.xml
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas 193082673 Oct 13 11:03 HITS.46676269._051959.pool.root.1
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas      1051 Oct 13 11:04 memory_monitor_summary.json
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas       529 Oct 13 11:04 boinc_task_state.xml
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas    404672 Oct 13 11:04 log.46676269._051959.job.log.tgz.1
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas        95 Oct 13 11:04 pilot_heartbeat.json
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas      7852 Oct 13 11:04 heartbeat.json
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 11:04 boinc_mmap_file
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas        27 Oct 13 11:04 wrapper_checkpoint.txt
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas      4893 Oct 13 11:05 pilotlog.txt
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas   1333949 Oct 13 11:05 log.46676269._051959.job.log.1
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas       357 Oct 13 11:05 output.list
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas       620 Oct 13 11:05 runtime_log
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas   1761280 Oct 13 11:05 result.tar.gz
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas      8703 Oct 13 11:05 runtime_log.err
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas       657 Oct 13 11:05 3XRKDm0IhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIWfNDmPXIqqn.diag
[2025-10-13 11:05:02] -rw-r--r-- 1 boincer umatlas     20866 Oct 13 11:05 stderr.txt
[2025-10-13 11:05:02] HITS file was successfully produced:
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas 193082673 Oct 13 11:03 shared/HITS.pool.root.1
[2025-10-13 11:05:02]  *** Contents of shared directory: ***
[2025-10-13 11:05:02] total 407252
[2025-10-13 11:05:02] -rw-r--r-- 2 boincer umatlas 221583596 Oct 13 08:27 ATLAS.root_0
[2025-10-13 11:05:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 08:27 start_atlas.sh
[2025-10-13 11:05:02] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 08:27 input.tar.gz
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas 193082673 Oct 13 11:03 HITS.pool.root.1
[2025-10-13 11:05:02] -rw------- 1 boincer umatlas   1761280 Oct 13 11:05 result.tar.gz
11:05:04 (24095): run_atlas exited; CPU time 70607.610025
11:05:04 (24095): called boinc_finish(0)

</stderr_txt>
]]>

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