Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:24:12 (3970396): wrapper (7.7.26015): starting
08:24:12 (3970396): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 08:24:12] Arguments: --nthreads 8
[2025-10-13 08:24:12] Threads: 8
[2025-10-13 08:24:12] Checking for CVMFS
[2025-10-13 08:24:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:24:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:24:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:24:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:24:13] 2.13.2.0 5242 7090 140900 151661 3 114 25797083 40960000 18178 16776704 0 25624685 99.753 15015523 32674 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 08:24:13] CVMFS is ok
[2025-10-13 08:24:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:24:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:24:13] Further information can be found at the LHC@home message board.
[2025-10-13 08:24:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:24:13] Checking for apptainer binary...
[2025-10-13 08:24:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:24:13] Running /usr/bin/apptainer --version
[2025-10-13 08:24:13] apptainer version 1.4.3-1.el9
[2025-10-13 08:24:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:24:13] c-212-1.aglt2.org
[2025-10-13 08:24:13] apptainer works
[2025-10-13 08:24:13] Set ATHENA_PROC_NUMBER=8
[2025-10-13 08:24:13] Set ATHENA_CORE_NUMBER=8
[2025-10-13 08:24:13] Starting ATLAS job with PandaID=6840970165
[2025-10-13 08:24:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:49:39]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:49:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 09:49:39]  replicas=None
[2025-10-13 09:49:39]  scope=mc23_13p6TeV
[2025-10-13 09:49:39]  status=None
[2025-10-13 09:49:39]  status_code=0
[2025-10-13 09:49:39]  storage_token=
[2025-10-13 09:49:39]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6840970165/log.46676269._092585.job.log.tgz.1
[2025-10-13 09:49:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/ac/log.46676269._092585.job.log.tgz.1
[2025-10-13 09:49:39]  workdir=None
[2025-10-13 09:49:39] ]
[2025-10-13 09:49:39] 2025-10-13 13:48:31,155 | INFO     | transferring file log.46676269._092585.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6840970165/log.46676269._092585.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 09:49:39] 2025-10-13 13:48:31,155 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6840970165/log.46676269._092585.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._092585.job
[2025-10-13 09:49:39] 2025-10-13 13:48:31,176 | INFO     | adding to output.list: log.46676269._092585.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/ac/log.46676269._092585.job.log.tg
[2025-10-13 09:49:39] 2025-10-13 13:48:31,177 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 09:49:39] 2025-10-13 13:48:31,177 | INFO     | summary of transferred files:
[2025-10-13 09:49:39] 2025-10-13 13:48:31,177 | INFO     |  -- lfn=log.46676269._092585.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:49:39] 2025-10-13 13:48:31,178 | INFO     | stage-out finished correctly
[2025-10-13 09:49:39] 2025-10-13 13:48:31,865 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:49:39] 2025-10-13 13:48:31,948 | INFO     | job 6840970165 has state=finished
[2025-10-13 09:49:39] 2025-10-13 13:48:31,948 | INFO     | preparing for final server update for job 6840970165 in state='finished'
[2025-10-13 09:49:39] 2025-10-13 13:48:31,949 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:49:39] 2025-10-13 13:48:31,949 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:49:39] 2025-10-13 13:48:31,949 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:49:39] 2025-10-13 13:48:31,949 | INFO     | job 6840970165 has finished - writing final server update
[2025-10-13 09:49:39] 2025-10-13 13:48:31,949 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:49:39] 2025-10-13 13:48:31,950 | INFO     | executing command: lscpu
[2025-10-13 09:49:39] 2025-10-13 13:48:32,015 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:49:39] 2025-10-13 13:48:32,247 | INFO     | time since job start (5047s) is within the limit (172800.0s)
[2025-10-13 09:49:39] 2025-10-13 13:48:32,529 | WARNING  | process 3996720 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 09:49:39] 2025-10-13 13:48:32,529 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6840970165/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:49:39] 2025-10-13 13:48:32,813 | INFO     | number of running child processes to parent process 3996720: 1
[2025-10-13 09:49:39] 2025-10-13 13:48:32,813 | INFO     | maximum number of monitored processes: 6
[2025-10-13 09:49:39] 2025-10-13 13:48:34,253 | INFO     | time since job start (5049s) is within the limit (172800.0s)
[2025-10-13 09:49:39] 2025-10-13 13:48:35,315 | INFO     | monitor loop #365: job 0:6840970165 is in state 'finished'
[2025-10-13 09:49:39] 2025-10-13 13:48:35,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:49:39] 2025-10-13 13:48:35,912 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 09:49:39] 2025-10-13 13:48:35,918 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2951.630760416668
[2025-10-13 09:49:39] 2025-10-13 13:48:35,935 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6840970165/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:49:39] 2025-10-13 13:48:35,936 | INFO     | extracted standard info from prmon json
[2025-10-13 09:49:39] 2025-10-13 13:48:35,936 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:49:39] 2025-10-13 13:48:35,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:49:39] 2025-10-13 13:48:35,937 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:49:39] 2025-10-13 13:48:35,937 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:49:39] 2025-10-13 13:48:35,939 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:49:39] 2025-10-13 13:48:35,939 | INFO     | sum of square deviations: 136095575.0
[2025-10-13 09:49:39] 2025-10-13 13:48:35,939 | INFO     | sum of deviations: -7029899860.000002
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | mean x: 1760360886.5
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | mean y: 2635021.6578947366
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | -- intersect: 90932562387.45087
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | intersect: 90932562387.45087
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | chi2: 0.04042512784626629
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | -- intersect: 90932562387.45087
[2025-10-13 09:49:39] 2025-10-13 13:48:35,940 | INFO     | current memory leak: -51.65 B/s (using 76 data points, chi2=0.04)
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | could have reported an average CPU frequency of 2978 MHz (6 samples)
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | ..............................
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . Timing measurements:
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . get job = 0 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . initial setup = 2 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . payload setup = 6 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . stage-in = 0 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . payload execution = 5018 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . stage-out = 0 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | . log creation = 0 s
[2025-10-13 09:49:39] 2025-10-13 13:48:35,941 | INFO     | ..............................
[2025-10-13 09:49:39] 2025-10-13 13:48:36,030 | INFO     | 
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | job summary report
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | --------------------------------------------------
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | PanDA job id: 6840970165
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | task id: 46676269
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | errors: (none)
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | pilot state: finished 
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | transexitcode: 0
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | exeerrorcode: 0
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | exeerrordiag: 
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | exitcode: 0
[2025-10-13 09:49:39] 2025-10-13 13:48:36,031 | INFO     | exitmsg: OK
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | cpuconsumptiontime: 34062 s
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | nevents: 400
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | neventsw: 0
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | pid: 3996720
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | pgrp: 3996720
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | corecount: 8
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | event service: False
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 5028: 2375486, 5029: 2384484, 5030: 2384540, 5034: 2384862}
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | --------------------------------------------------
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | 
[2025-10-13 09:49:39] 2025-10-13 13:48:36,032 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,055 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:49:39] 2025-10-13 13:48:36,056 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,057 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:49:39] 2025-10-13 13:48:36,057 | INFO     | job 6840970165 has completed (purged errors)
[2025-10-13 09:49:39] 2025-10-13 13:48:36,057 | INFO     | overall cleanup function is called
[2025-10-13 09:49:39] 2025-10-13 13:48:37,065 | INFO     | --- collectZombieJob: --- 10, [3996720]
[2025-10-13 09:49:39] 2025-10-13 13:48:37,065 | INFO     | zombie collector waiting for pid 3996720
[2025-10-13 09:49:39] 2025-10-13 13:48:37,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:49:39] 2025-10-13 13:48:37,066 | INFO     | collected zombie processes
[2025-10-13 09:49:39] 2025-10-13 13:48:37,066 | INFO     | will attempt to kill all subprocesses of pid=3996720
[2025-10-13 09:49:39] 2025-10-13 13:48:37,451 | INFO     | process IDs to be killed: [3996720] (in reverse order)
[2025-10-13 09:49:39] 2025-10-13 13:48:37,575 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:49:39] 2025-10-13 13:48:37,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:49:39] 2025-10-13 13:48:37,591 | INFO     | did not find any defunct processes belonging to 3996720
[2025-10-13 09:49:39] 2025-10-13 13:48:37,607 | INFO     | did not find any defunct processes belonging to 3996720
[2025-10-13 09:49:39] 2025-10-13 13:48:37,607 | INFO     | ready for new job
[2025-10-13 09:49:39] 2025-10-13 13:48:37,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:49:39] 2025-10-13 13:48:37,610 | INFO     | ***************************************
[2025-10-13 09:49:39] 2025-10-13 13:48:37,610 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:49:39] 2025-10-13 13:48:37,610 | INFO     | ***************************************
[2025-10-13 09:49:39] 2025-10-13 13:48:37,610 | INFO     | 
[2025-10-13 09:49:39] 2025-10-13 13:48:37,617 | INFO     | architecture information:
[2025-10-13 09:49:39] 2025-10-13 13:48:37,617 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:49:39] 2025-10-13 13:48:37,636 | INFO     | cat /etc/os-release:
[2025-10-13 09:49:39] NAME="CentOS Linux"
[2025-10-13 09:49:39] VERSION="7 (Core)"
[2025-10-13 09:49:39] ID="centos"
[2025-10-13 09:49:39] ID_LIKE="rhel fedora"
[2025-10-13 09:49:39] VERSION_ID="7"
[2025-10-13 09:49:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:49:39] ANSI_COLOR="0;31"
[2025-10-13 09:49:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:49:39] HOME_URL="https://www.centos.org/"
[2025-10-13 09:49:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:49:39] 
[2025-10-13 09:49:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:49:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:49:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:49:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:49:39] 
[2025-10-13 09:49:39] 2025-10-13 13:48:37,636 | INFO     | ***************************************
[2025-10-13 09:49:39] 2025-10-13 13:48:38,140 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 09:49:39] 2025-10-13 13:48:38,156 | INFO     | sufficient remaining disk space (128036372480 B)
[2025-10-13 09:49:39] 2025-10-13 13:48:38,157 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:49:39] 2025-10-13 13:48:38,157 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:49:39] 2025-10-13 13:48:38,157 | INFO     | update_server=False
[2025-10-13 09:49:39] 2025-10-13 13:48:38,157 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:49:39] 2025-10-13 13:48:38,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:49:39] 2025-10-13 13:48:38,176 | INFO     | all job control threads have been joined
[2025-10-13 09:49:39] 2025-10-13 13:48:38,574 | INFO     | all data control threads have been joined
[2025-10-13 09:49:39] 2025-10-13 13:48:38,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:49:39] 2025-10-13 13:48:38,820 | INFO     | aborting loop
[2025-10-13 09:49:39] 2025-10-13 13:48:39,162 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:39,171 | INFO     | all payload control threads have been joined
[2025-10-13 09:49:39] 2025-10-13 13:48:39,180 | INFO     | [job] control thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:39,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:49:39] 2025-10-13 13:48:39,300 | INFO     | [job] validate thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:39,543 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:39,578 | INFO     | [data] control thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:39,771 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:39,825 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:40,038 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:40,156 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:40,177 | INFO     | [payload] control thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:40,373 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:40,554 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:41,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:49:39] 2025-10-13 13:48:41,259 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:42,045 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:42,162 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:48:49,043 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:49:39] 2025-10-13 13:48:50,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:49:39] 2025-10-13 13:49:07,696 | INFO     | PID=3976124 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:49:39] 2025-10-13 13:49:07,696 | INFO     | .. there are 21 such processes running
[2025-10-13 09:49:39] 2025-10-13 13:49:07,697 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:49:39] 2025-10-13 13:49:07,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:49:39] 2025-10-13 13:49:07,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:49:39] 2025-10-13 13:49:33,430 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:49:39] 2025-10-13 13:49:33,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355669055296)>', '<ExcThread(monitor, started 140355387229952)>']
[2025-10-13 09:49:39] 2025-10-13 13:49:33,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:49:39] 2025-10-13 13:49:33,821 | INFO     | [monitor] control thread has ended
[2025-10-13 09:49:39] 2025-10-13 13:49:38,802 | INFO     | all workflow threads have been joined
[2025-10-13 09:49:39] 2025-10-13 13:49:38,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:49:39] 2025-10-13 13:49:38,804 | INFO     | traces error code: 0
[2025-10-13 09:49:39] 2025-10-13 13:49:38,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:49:39] 2025-10-13 13:49:38,958 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:49:39] 2025-10-13 13:49:38,961 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:49:39] 2025-10-13 13:49:38,963 [wrapper] pilotpid: 3976124
[2025-10-13 09:49:39] 2025-10-13 13:49:38,966 [wrapper] Pilot exit status: 0
[2025-10-13 09:49:39] 2025-10-13 13:49:38,979 [wrapper] pandaids: 6840970165
[2025-10-13 09:49:39] 2025-10-13 13:49:39,073 [wrapper] cleanup supervisor_pilot 4164694 3976125
[2025-10-13 09:49:39] 2025-10-13 13:49:39,076 [wrapper] Test setup, not cleaning
[2025-10-13 09:49:39] 2025-10-13 13:49:39,079 [wrapper] apfmon messages muted
[2025-10-13 09:49:39] 2025-10-13 13:49:39,082 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:49:39] 2025-10-13 13:49:39,085 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:49:39]  *** Error codes and diagnostics ***
[2025-10-13 09:49:39]     "exeErrorCode": 0,
[2025-10-13 09:49:39]     "exeErrorDiag": "",
[2025-10-13 09:49:39]     "pilotErrorCode": 0,
[2025-10-13 09:49:39]     "pilotErrorDiag": "",
[2025-10-13 09:49:39]  *** Listing of results directory ***
[2025-10-13 09:49:39] total 408612
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 19:51 pilot3.tar.gz
[2025-10-13 09:49:39] -rwx------. 1 boincer umatlas     36292 Oct 12 19:55 runpilot2-wrapper.sh
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 19:55 queuedata.json
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas       100 Oct 13 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:49:39] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 08:24 run_atlas
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas       105 Oct 13 08:24 job.xml
[2025-10-13 09:49:39] -rw-r--r--. 2 boincer umatlas 219965991 Oct 13 08:24 EVNT.46676267._004672.pool.root.1
[2025-10-13 09:49:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 08:24 start_atlas.sh
[2025-10-13 09:49:39] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 08:24 shared
[2025-10-13 09:49:39] -rw-r--r--. 2 boincer umatlas    569677 Oct 13 08:24 input.tar.gz
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas         0 Oct 13 08:24 boinc_lockfile
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 08:24 pandaJob.out
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas    972497 Oct 13 08:24 agis_schedconf.cvmfs.json
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas   1560580 Oct 13 08:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:49:39] drwx------. 5 boincer umatlas      4096 Oct 13 08:24 pilot3
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas      6946 Oct 13 09:45 init_data.xml
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas 192415311 Oct 13 09:47 HITS.46676269._092585.pool.root.1
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas       529 Oct 13 09:48 boinc_task_state.xml
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas      1033 Oct 13 09:48 memory_monitor_summary.json
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas    339721 Oct 13 09:48 log.46676269._092585.job.log.tgz.1
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas      7773 Oct 13 09:48 heartbeat.json
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas        95 Oct 13 09:49 pilot_heartbeat.json
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 09:49 boinc_mmap_file
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas        27 Oct 13 09:49 wrapper_checkpoint.txt
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas      4897 Oct 13 09:49 pilotlog.txt
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas    729563 Oct 13 09:49 log.46676269._092585.job.log.1
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas       357 Oct 13 09:49 output.list
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas       620 Oct 13 09:49 runtime_log
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas   1085440 Oct 13 09:49 result.tar.gz
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 09:49 runtime_log.err
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas       651 Oct 13 09:49 NwzMDml5KS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmq6lNDmVBYXWn.diag
[2025-10-13 09:49:39] -rw-r--r--. 1 boincer umatlas     21862 Oct 13 09:49 stderr.txt
[2025-10-13 09:49:39] HITS file was successfully produced:
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas 192415311 Oct 13 09:47 shared/HITS.pool.root.1
[2025-10-13 09:49:39]  *** Contents of shared directory: ***
[2025-10-13 09:49:39] total 404364
[2025-10-13 09:49:39] -rw-r--r--. 2 boincer umatlas 219965991 Oct 13 08:24 ATLAS.root_0
[2025-10-13 09:49:39] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 08:24 start_atlas.sh
[2025-10-13 09:49:39] -rw-r--r--. 2 boincer umatlas    569677 Oct 13 08:24 input.tar.gz
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas 192415311 Oct 13 09:47 HITS.pool.root.1
[2025-10-13 09:49:39] -rw-------. 1 boincer umatlas   1085440 Oct 13 09:49 result.tar.gz
09:49:40 (3970396): run_atlas exited; CPU time 34199.781462
09:49:40 (3970396): called boinc_finish(0)

</stderr_txt>
]]>

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