Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:24:02 (3966701): wrapper (7.7.26015): starting
08:24:02 (3966701): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 08:24:02] Arguments: --nthreads 8
[2025-10-13 08:24:02] Threads: 8
[2025-10-13 08:24:02] Checking for CVMFS
[2025-10-13 08:24:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:24:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:24:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:24:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:24:03] 2.13.2.0 5242 7090 140900 151661 3 75 25797083 40960000 18653 16776704 0 25614702 99.753 15015523 32674 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 08:24:03] CVMFS is ok
[2025-10-13 08:24:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:24:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:24:03] Further information can be found at the LHC@home message board.
[2025-10-13 08:24:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:24:03] Checking for apptainer binary...
[2025-10-13 08:24:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:24:03] Running /usr/bin/apptainer --version
[2025-10-13 08:24:03] apptainer version 1.4.3-1.el9
[2025-10-13 08:24:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:24:03] c-212-1.aglt2.org
[2025-10-13 08:24:03] apptainer works
[2025-10-13 08:24:03] Set ATHENA_PROC_NUMBER=8
[2025-10-13 08:24:03] Set ATHENA_CORE_NUMBER=8
[2025-10-13 08:24:03] Starting ATLAS job with PandaID=6840852411
[2025-10-13 08:24:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:50:29]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:50:29] 2025-10-13 13:49:13,104 | INFO     | summary of transferred files:
[2025-10-13 09:50:29] 2025-10-13 13:49:13,104 | INFO     |  -- lfn=log.46676269._091240.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:50:29] 2025-10-13 13:49:13,104 | INFO     | stage-out finished correctly
[2025-10-13 09:50:29] 2025-10-13 13:49:15,075 | INFO     | time since job start (5100s) is within the limit (172800.0s)
[2025-10-13 09:50:29] 2025-10-13 13:49:15,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:50:29] 2025-10-13 13:49:16,628 | WARNING  | process 3983969 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 09:50:29] 2025-10-13 13:49:16,628 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840852411/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,629 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840852411/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,630 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 09:50:29] 2025-10-13 13:49:16,630 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 09:50:29] 2025-10-13 13:49:16,631 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3300934 B
[2025-10-13 09:50:29] 2025-10-13 13:49:16,631 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16026 B
[2025-10-13 09:50:29] 2025-10-13 13:49:16,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 09:50:29] 2025-10-13 13:49:16,656 | INFO     | sufficient remaining disk space (128031129600 B)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,656 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,657 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840852411: 3603411 B (within 2537553920 B limit)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,657 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840852411/HITS.46676269._091240.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,657 | INFO     | total size of present files: 0 B (workdir size: 3603411 B)
[2025-10-13 09:50:29] 2025-10-13 13:49:16,657 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840852411/HITS.46676269._091240.pool.root.1 since it does not exist
[2025-10-13 09:50:29] 2025-10-13 13:49:17,049 | INFO     | number of running child processes to parent process 3983969: 1
[2025-10-13 09:50:29] 2025-10-13 13:49:17,049 | INFO     | maximum number of monitored processes: 6
[2025-10-13 09:50:29] 2025-10-13 13:49:17,082 | INFO     | time since job start (5102s) is within the limit (172800.0s)
[2025-10-13 09:50:29] 2025-10-13 13:49:17,659 | INFO     | job 6840852411 has state=finished
[2025-10-13 09:50:29] 2025-10-13 13:49:17,660 | INFO     | preparing for final server update for job 6840852411 in state='finished'
[2025-10-13 09:50:29] 2025-10-13 13:49:17,660 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:50:29] 2025-10-13 13:49:17,660 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:50:29] 2025-10-13 13:49:17,661 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:50:29] 2025-10-13 13:49:17,661 | INFO     | job 6840852411 has finished - writing final server update
[2025-10-13 09:50:29] 2025-10-13 13:49:17,661 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:50:29] 2025-10-13 13:49:17,661 | INFO     | executing command: lscpu
[2025-10-13 09:50:29] 2025-10-13 13:49:17,731 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:50:29] 2025-10-13 13:49:19,087 | INFO     | time since job start (5104s) is within the limit (172800.0s)
[2025-10-13 09:50:29] 2025-10-13 13:49:19,552 | INFO     | monitor loop #369: job 0:6840852411 is in state 'finished'
[2025-10-13 09:50:29] 2025-10-13 13:49:19,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:50:29] 2025-10-13 13:49:21,089 | INFO     | time since job start (5106s) is within the limit (172800.0s)
[2025-10-13 09:50:29] 2025-10-13 13:49:21,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 09:50:29] 2025-10-13 13:49:21,910 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2993.267229166667
[2025-10-13 09:50:29] 2025-10-13 13:49:21,926 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840852411/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:50:29] 2025-10-13 13:49:21,927 | INFO     | extracted standard info from prmon json
[2025-10-13 09:50:29] 2025-10-13 13:49:21,927 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:50:29] 2025-10-13 13:49:21,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:50:29] 2025-10-13 13:49:21,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:50:29] 2025-10-13 13:49:21,928 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:50:29] 2025-10-13 13:49:21,930 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:50:29] 2025-10-13 13:49:21,930 | INFO     | sum of square deviations: 141539398.0
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | sum of deviations: -7060780744.0
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | mean x: 1760360907.0
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | mean y: 2633879.649350649
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | -- intersect: 87819330645.84567
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | intersect: 87819330645.84567
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | chi2: 0.040814398002616006
[2025-10-13 09:50:29] 2025-10-13 13:49:21,931 | INFO     | -- intersect: 87819330645.84567
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | current memory leak: -49.89 B/s (using 77 data points, chi2=0.04)
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | could have reported an average CPU frequency of 2981 MHz (6 samples)
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | ..............................
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | . Timing measurements:
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | . get job = 0 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | . initial setup = 2 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | . payload setup = 6 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | . stage-in = 0 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,932 | INFO     | . payload execution = 5069 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,933 | INFO     | . stage-out = 0 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,933 | INFO     | . log creation = 0 s
[2025-10-13 09:50:29] 2025-10-13 13:49:21,933 | INFO     | ..............................
[2025-10-13 09:50:29] 2025-10-13 13:49:22,468 | INFO     | 
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | job summary report
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | --------------------------------------------------
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | PanDA job id: 6840852411
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | task id: 46676269
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | errors: (none)
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:50:29] 2025-10-13 13:49:22,469 | INFO     | pilot state: finished 
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | transexitcode: 0
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | exeerrorcode: 0
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | exeerrordiag: 
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | exitcode: 0
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | exitmsg: OK
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | cpuconsumptiontime: 33887 s
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | nevents: 400
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | neventsw: 0
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | pid: 3983969
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | pgrp: 3983969
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | corecount: 8
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | event service: False
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | sizes: {0: 2348028, 1: 2348884, 6: 2349146, 12: 2349174, 5079: 2375397, 5081: 2384395, 5084: 2384579, 5090: 2384801}
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | --------------------------------------------------
[2025-10-13 09:50:29] 2025-10-13 13:49:22,470 | INFO     | 
[2025-10-13 09:50:29] 2025-10-13 13:49:22,471 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 09:50:29] 2025-10-13 13:49:22,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,501 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,501 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,501 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,502 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | job 6840852411 has completed (purged errors)
[2025-10-13 09:50:29] 2025-10-13 13:49:22,503 | INFO     | overall cleanup function is called
[2025-10-13 09:50:29] 2025-10-13 13:49:23,512 | INFO     | --- collectZombieJob: --- 10, [3983969]
[2025-10-13 09:50:29] 2025-10-13 13:49:23,513 | INFO     | zombie collector waiting for pid 3983969
[2025-10-13 09:50:29] 2025-10-13 13:49:23,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:50:29] 2025-10-13 13:49:23,513 | INFO     | collected zombie processes
[2025-10-13 09:50:29] 2025-10-13 13:49:23,513 | INFO     | will attempt to kill all subprocesses of pid=3983969
[2025-10-13 09:50:29] 2025-10-13 13:49:23,902 | INFO     | process IDs to be killed: [3983969] (in reverse order)
[2025-10-13 09:50:29] 2025-10-13 13:49:24,038 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:50:29] 2025-10-13 13:49:24,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:50:29] 2025-10-13 13:49:24,055 | INFO     | did not find any defunct processes belonging to 3983969
[2025-10-13 09:50:29] 2025-10-13 13:49:24,071 | INFO     | did not find any defunct processes belonging to 3983969
[2025-10-13 09:50:29] 2025-10-13 13:49:24,072 | INFO     | ready for new job
[2025-10-13 09:50:29] 2025-10-13 13:49:24,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:50:29] 2025-10-13 13:49:24,074 | INFO     | ***************************************
[2025-10-13 09:50:29] 2025-10-13 13:49:24,074 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:50:29] 2025-10-13 13:49:24,074 | INFO     | ***************************************
[2025-10-13 09:50:29] 2025-10-13 13:49:24,075 | INFO     | 
[2025-10-13 09:50:29] 2025-10-13 13:49:24,080 | INFO     | architecture information:
[2025-10-13 09:50:29] 2025-10-13 13:49:24,080 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:50:29] 2025-10-13 13:49:24,098 | INFO     | cat /etc/os-release:
[2025-10-13 09:50:29] NAME="CentOS Linux"
[2025-10-13 09:50:29] VERSION="7 (Core)"
[2025-10-13 09:50:29] ID="centos"
[2025-10-13 09:50:29] ID_LIKE="rhel fedora"
[2025-10-13 09:50:29] VERSION_ID="7"
[2025-10-13 09:50:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:50:29] ANSI_COLOR="0;31"
[2025-10-13 09:50:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:50:29] HOME_URL="https://www.centos.org/"
[2025-10-13 09:50:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:50:29] 
[2025-10-13 09:50:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:50:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:50:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:50:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:50:29] 
[2025-10-13 09:50:29] 2025-10-13 13:49:24,099 | INFO     | ***************************************
[2025-10-13 09:50:29] 2025-10-13 13:49:24,601 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 09:50:29] 2025-10-13 13:49:24,627 | INFO     | sufficient remaining disk space (128035323904 B)
[2025-10-13 09:50:29] 2025-10-13 13:49:24,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:50:29] 2025-10-13 13:49:24,628 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:50:29] 2025-10-13 13:49:24,628 | INFO     | update_server=False
[2025-10-13 09:50:29] 2025-10-13 13:49:24,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:50:29] 2025-10-13 13:49:24,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:50:29] 2025-10-13 13:49:25,110 | INFO     | all data control threads have been joined
[2025-10-13 09:50:29] 2025-10-13 13:49:25,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:50:29] 2025-10-13 13:49:25,559 | INFO     | aborting loop
[2025-10-13 09:50:29] 2025-10-13 13:49:25,623 | INFO     | all job control threads have been joined
[2025-10-13 09:50:29] 2025-10-13 13:49:25,634 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:25,838 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,023 | INFO     | all payload control threads have been joined
[2025-10-13 09:50:29] 2025-10-13 13:49:26,116 | INFO     | [data] control thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,197 | INFO     | [job] validate thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,254 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:50:29] 2025-10-13 13:49:26,561 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,629 | INFO     | [job] control thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,633 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,829 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,888 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,979 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:26,987 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:27,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:50:29] 2025-10-13 13:49:27,028 | INFO     | [payload] control thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:28,021 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:30,500 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:35,166 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:50:29] 2025-10-13 13:49:36,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:50:29] 2025-10-13 13:49:54,676 | INFO     | PID=3970386 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 09:50:29] 2025-10-13 13:49:54,676 | INFO     | .. there are 20 such processes running
[2025-10-13 09:50:29] 2025-10-13 13:49:54,677 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:50:29] 2025-10-13 13:49:54,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:50:29] 2025-10-13 13:49:54,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:50:29] 2025-10-13 13:50:23,277 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:50:29] 2025-10-13 13:50:24,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539361515328)>', '<ExcThread(monitor, started 140538997085952)>']
[2025-10-13 09:50:29] 2025-10-13 13:50:24,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:50:29] 2025-10-13 13:50:24,791 | INFO     | [monitor] control thread has ended
[2025-10-13 09:50:29] 2025-10-13 13:50:29,057 | INFO     | all workflow threads have been joined
[2025-10-13 09:50:29] 2025-10-13 13:50:29,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:50:29] 2025-10-13 13:50:29,058 | INFO     | traces error code: 0
[2025-10-13 09:50:29] 2025-10-13 13:50:29,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:50:29] 2025-10-13 13:50:29,203 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:50:29] 2025-10-13 13:50:29,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:50:29] 2025-10-13 13:50:29,210 [wrapper] pilotpid: 3970386
[2025-10-13 09:50:29] 2025-10-13 13:50:29,214 [wrapper] Pilot exit status: 0
[2025-10-13 09:50:29] 2025-10-13 13:50:29,226 [wrapper] pandaids: 6840852411
[2025-10-13 09:50:29] 2025-10-13 13:50:29,316 [wrapper] cleanup supervisor_pilot 4159949 3970387
[2025-10-13 09:50:29] 2025-10-13 13:50:29,319 [wrapper] Test setup, not cleaning
[2025-10-13 09:50:29] 2025-10-13 13:50:29,321 [wrapper] apfmon messages muted
[2025-10-13 09:50:29] 2025-10-13 13:50:29,325 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:50:29] 2025-10-13 13:50:29,328 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:50:29]  *** Error codes and diagnostics ***
[2025-10-13 09:50:29]     "exeErrorCode": 0,
[2025-10-13 09:50:29]     "exeErrorDiag": "",
[2025-10-13 09:50:29]     "pilotErrorCode": 0,
[2025-10-13 09:50:29]     "pilotErrorDiag": "",
[2025-10-13 09:50:29]  *** Listing of results directory ***
[2025-10-13 09:50:29] total 415836
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 17:57 pilot3.tar.gz
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 18:39 queuedata.json
[2025-10-13 09:50:29] -rwx------. 1 boincer umatlas     36292 Oct 12 18:40 runpilot2-wrapper.sh
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas       100 Oct 13 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:50:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 08:24 run_atlas
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas       105 Oct 13 08:24 job.xml
[2025-10-13 09:50:29] -rw-r--r--. 2 boincer umatlas 220516996 Oct 13 08:24 EVNT.46676267._004621.pool.root.1
[2025-10-13 09:50:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 08:24 start_atlas.sh
[2025-10-13 09:50:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 08:24 shared
[2025-10-13 09:50:29] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 08:24 input.tar.gz
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas         0 Oct 13 08:24 boinc_lockfile
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 08:24 pandaJob.out
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas    972497 Oct 13 08:24 agis_schedconf.cvmfs.json
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas   1560580 Oct 13 08:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:50:29] drwx------. 5 boincer umatlas      4096 Oct 13 08:24 pilot3
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas      6946 Oct 13 09:45 init_data.xml
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas 199242983 Oct 13 09:48 HITS.46676269._091240.pool.root.1
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas       529 Oct 13 09:48 boinc_task_state.xml
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas      1032 Oct 13 09:49 memory_monitor_summary.json
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas    335149 Oct 13 09:49 log.46676269._091240.job.log.tgz.1
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas      7775 Oct 13 09:49 heartbeat.json
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas        95 Oct 13 09:49 pilot_heartbeat.json
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas        27 Oct 13 09:50 wrapper_checkpoint.txt
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 09:50 boinc_mmap_file
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas      4897 Oct 13 09:50 pilotlog.txt
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas    738699 Oct 13 09:50 log.46676269._091240.job.log.1
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas       357 Oct 13 09:50 output.list
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas       620 Oct 13 09:50 runtime_log
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas   1095680 Oct 13 09:50 result.tar.gz
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 09:50 runtime_log.err
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas       651 Oct 13 09:50 6JiMDmNvJS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGCVMDmsnMsMn.diag
[2025-10-13 09:50:29] -rw-r--r--. 1 boincer umatlas     22357 Oct 13 09:50 stderr.txt
[2025-10-13 09:50:29] HITS file was successfully produced:
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas 199242983 Oct 13 09:48 shared/HITS.pool.root.1
[2025-10-13 09:50:29]  *** Contents of shared directory: ***
[2025-10-13 09:50:29] total 411584
[2025-10-13 09:50:29] -rw-r--r--. 2 boincer umatlas 220516996 Oct 13 08:24 ATLAS.root_0
[2025-10-13 09:50:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 08:24 start_atlas.sh
[2025-10-13 09:50:29] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 08:24 input.tar.gz
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas 199242983 Oct 13 09:48 HITS.pool.root.1
[2025-10-13 09:50:29] -rw-------. 1 boincer umatlas   1095680 Oct 13 09:50 result.tar.gz
09:50:30 (3966701): run_atlas exited; CPU time 33992.227417
09:50:30 (3966701): called boinc_finish(0)

</stderr_txt>
]]>

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