Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:24:04 (1696615): wrapper (7.7.26015): starting
17:24:04 (1696615): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 17:24:04] Arguments: --nthreads 12
[2025-10-13 17:24:04] Threads: 12
[2025-10-13 17:24:04] Checking for CVMFS
[2025-10-13 17:24:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:24:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:24:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:24:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:24:05] 2.13.2.0 8715 30664 234432 151666 0 188 40647333 46080001 5767 130560 0 209574315 99.895 56090172 21600 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 17:24:05] CVMFS is ok
[2025-10-13 17:24:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:24:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:24:05] Further information can be found at the LHC@home message board.
[2025-10-13 17:24:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:24:05] Checking for apptainer binary...
[2025-10-13 17:24:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:24:05] Running /usr/bin/apptainer --version
[2025-10-13 17:24:05] apptainer version 1.4.2-1.el9
[2025-10-13 17:24:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:24:05] mff2104.farm.particle.cz
[2025-10-13 17:24:05] apptainer works
[2025-10-13 17:24:05] Set ATHENA_PROC_NUMBER=12
[2025-10-13 17:24:05] Set ATHENA_CORE_NUMBER=12
[2025-10-13 17:24:05] Starting ATLAS job with PandaID=6842179745
[2025-10-13 17:24:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:21:33]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:21:33]  status_code=0
[2025-10-13 18:21:33]  storage_token=
[2025-10-13 18:21:33]  surl=/scratch/.boinc/slots/4/PanDA_Pilot-6842179745/log.46676269._095937.job.log.tgz.1
[2025-10-13 18:21:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/af/log.46676269._095937.job.log.tgz.1
[2025-10-13 18:21:33]  workdir=None
[2025-10-13 18:21:33] ]
[2025-10-13 18:21:33] 2025-10-13 16:20:53,006 | INFO     | transferring file log.46676269._095937.job.log.tgz.1 from /scratch/.boinc/slots/4/PanDA_Pilot-6842179745/log.46676269._095937.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 18:21:33] 2025-10-13 16:20:53,007 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/4/PanDA_Pilot-6842179745/log.46676269._095937.job.log.tgz.1 /scratch/.boinc/slots/4/log.46676269._095937.j
[2025-10-13 18:21:33] 2025-10-13 16:20:53,034 | INFO     | adding to output.list: log.46676269._095937.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/af/log.46676269._095937.job.log.tg
[2025-10-13 18:21:33] 2025-10-13 16:20:53,035 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 18:21:33] 2025-10-13 16:20:53,035 | INFO     | summary of transferred files:
[2025-10-13 18:21:33] 2025-10-13 16:20:53,035 | INFO     |  -- lfn=log.46676269._095937.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 18:21:33] 2025-10-13 16:20:53,035 | INFO     | stage-out finished correctly
[2025-10-13 18:21:33] 2025-10-13 16:20:53,135 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 18:21:33] 2025-10-13 16:20:53,411 | INFO     | time since job start (3396s) is within the limit (172800.0s)
[2025-10-13 18:21:33] 2025-10-13 16:20:54,216 | INFO     | monitor loop #245: job 0:6842179745 is in state 'finished'
[2025-10-13 18:21:33] 2025-10-13 16:20:54,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:21:33] 2025-10-13 16:20:54,841 | INFO     | PID=1705685 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 18:21:33] 2025-10-13 16:20:54,841 | INFO     | .. there are 8 such processes running
[2025-10-13 18:21:33] 2025-10-13 16:20:54,889 | INFO     | job 6842179745 has state=finished
[2025-10-13 18:21:33] 2025-10-13 16:20:54,890 | INFO     | preparing for final server update for job 6842179745 in state='finished'
[2025-10-13 18:21:33] 2025-10-13 16:20:54,890 | INFO     | this job has now completed (state=finished)
[2025-10-13 18:21:33] 2025-10-13 16:20:54,891 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 18:21:33] 2025-10-13 16:20:54,891 | INFO     | log transfer has been attempted: DONE
[2025-10-13 18:21:33] 2025-10-13 16:20:54,891 | INFO     | job 6842179745 has finished - writing final server update
[2025-10-13 18:21:33] 2025-10-13 16:20:54,891 | INFO     | total number of processed events: 400 (read)
[2025-10-13 18:21:33] 2025-10-13 16:20:54,892 | INFO     | executing command: lscpu
[2025-10-13 18:21:33] 2025-10-13 16:20:54,970 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 18:21:33] 2025-10-13 16:20:55,842 | INFO     | time since job start (3398s) is within the limit (172800.0s)
[2025-10-13 18:21:33] 2025-10-13 16:20:56,719 | INFO     | monitor loop #246: job 0:6842179745 is in state 'finished'
[2025-10-13 18:21:33] 2025-10-13 16:20:56,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:21:33] 2025-10-13 16:20:57,848 | INFO     | time since job start (3400s) is within the limit (172800.0s)
[2025-10-13 18:21:33] 2025-10-13 16:20:59,223 | INFO     | monitor loop #247: job 0:6842179745 is in state 'finished'
[2025-10-13 18:21:33] 2025-10-13 16:20:59,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:21:33] 2025-10-13 16:20:59,853 | INFO     | time since job start (3402s) is within the limit (172800.0s)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,345 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 18:21:33] 2025-10-13 16:21:00,359 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2734.2816562500007
[2025-10-13 18:21:33] 2025-10-13 16:21:00,377 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6842179745/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,378 | INFO     | extracted standard info from prmon json
[2025-10-13 18:21:33] 2025-10-13 16:21:00,378 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:21:33] 2025-10-13 16:21:00,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:21:33] 2025-10-13 16:21:00,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:21:33] 2025-10-13 16:21:00,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:21:33] 2025-10-13 16:21:00,380 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:21:33] 2025-10-13 16:21:00,380 | INFO     | sum of square deviations: 36465800.0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | sum of deviations: -496588983.0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | mean x: 1760370856.0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | mean y: 2744636.8775510206
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | -- intersect: 23975364820.278973
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | intersect: 23975364820.278973
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | chi2: 0.001626336067603469
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | -- intersect: 23975364820.278973
[2025-10-13 18:21:33] 2025-10-13 16:21:00,381 | INFO     | current memory leak: -13.62 B/s (using 49 data points, chi2=0.00)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | could have reported an average CPU frequency of 2747 MHz (5 samples)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | ..............................
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . Timing measurements:
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . get job = 0 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . initial setup = 1 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . payload setup = 6 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . stage-in = 0 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . payload execution = 3366 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,382 | INFO     | . stage-out = 0 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,383 | INFO     | . log creation = 0 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,383 | INFO     | ..............................
[2025-10-13 18:21:33] 2025-10-13 16:21:00,589 | INFO     | 
[2025-10-13 18:21:33] 2025-10-13 16:21:00,589 | INFO     | job summary report
[2025-10-13 18:21:33] 2025-10-13 16:21:00,589 | INFO     | --------------------------------------------------
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | PanDA job id: 6842179745
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | task id: 46676269
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | errors: (none)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | pilot state: finished 
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | transexitcode: 0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | exeerrorcode: 0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | exeerrordiag: 
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | exitcode: 0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | exitmsg: OK
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | cpuconsumptiontime: 35322 s
[2025-10-13 18:21:33] 2025-10-13 16:21:00,590 | INFO     | nevents: 400
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | neventsw: 0
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | pid: 1713546
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | pgrp: 1713546
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | corecount: 12
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | event service: False
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | sizes: {0: 2348757, 6: 2349019, 11: 2349047, 3377: 2374732, 3379: 2383788, 3386: 2383958}
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | --------------------------------------------------
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | 
[2025-10-13 18:21:33] 2025-10-13 16:21:00,591 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-10-13 18:21:33] 2025-10-13 16:21:00,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:21:33] 2025-10-13 16:21:00,621 | INFO     | job 6842179745 has completed (purged errors)
[2025-10-13 18:21:33] 2025-10-13 16:21:00,622 | INFO     | overall cleanup function is called
[2025-10-13 18:21:33] 2025-10-13 16:21:01,630 | INFO     | --- collectZombieJob: --- 10, [1713546]
[2025-10-13 18:21:33] 2025-10-13 16:21:01,631 | INFO     | zombie collector waiting for pid 1713546
[2025-10-13 18:21:33] 2025-10-13 16:21:01,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:21:33] 2025-10-13 16:21:01,631 | INFO     | collected zombie processes
[2025-10-13 18:21:33] 2025-10-13 16:21:01,631 | INFO     | will attempt to kill all subprocesses of pid=1713546
[2025-10-13 18:21:33] 2025-10-13 16:21:01,988 | INFO     | process IDs to be killed: [1713546] (in reverse order)
[2025-10-13 18:21:33] 2025-10-13 16:21:02,110 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:21:33] 2025-10-13 16:21:02,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:21:33] 2025-10-13 16:21:02,123 | INFO     | did not find any defunct processes belonging to 1713546
[2025-10-13 18:21:33] 2025-10-13 16:21:02,134 | INFO     | did not find any defunct processes belonging to 1713546
[2025-10-13 18:21:33] 2025-10-13 16:21:02,134 | INFO     | ready for new job
[2025-10-13 18:21:33] 2025-10-13 16:21:02,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:21:33] 2025-10-13 16:21:02,136 | INFO     | ***************************************
[2025-10-13 18:21:33] 2025-10-13 16:21:02,136 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:21:33] 2025-10-13 16:21:02,136 | INFO     | ***************************************
[2025-10-13 18:21:33] 2025-10-13 16:21:02,136 | INFO     | 
[2025-10-13 18:21:33] 2025-10-13 16:21:02,142 | INFO     | architecture information:
[2025-10-13 18:21:33] 2025-10-13 16:21:02,142 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:21:33] 2025-10-13 16:21:02,164 | INFO     | cat /etc/os-release:
[2025-10-13 18:21:33] NAME="CentOS Linux"
[2025-10-13 18:21:33] VERSION="7 (Core)"
[2025-10-13 18:21:33] ID="centos"
[2025-10-13 18:21:33] ID_LIKE="rhel fedora"
[2025-10-13 18:21:33] VERSION_ID="7"
[2025-10-13 18:21:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:21:33] ANSI_COLOR="0;31"
[2025-10-13 18:21:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:21:33] HOME_URL="https://www.centos.org/"
[2025-10-13 18:21:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:21:33] 
[2025-10-13 18:21:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:21:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:21:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:21:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:21:33] 
[2025-10-13 18:21:33] 2025-10-13 16:21:02,165 | INFO     | ***************************************
[2025-10-13 18:21:33] 2025-10-13 16:21:02,668 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-10-13 18:21:33] 2025-10-13 16:21:02,755 | INFO     | sufficient remaining disk space (1688081530880 B)
[2025-10-13 18:21:33] 2025-10-13 16:21:02,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:21:33] 2025-10-13 16:21:02,756 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:21:33] 2025-10-13 16:21:02,756 | INFO     | update_server=False
[2025-10-13 18:21:33] 2025-10-13 16:21:02,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:21:33] 2025-10-13 16:21:02,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:21:33] 2025-10-13 16:21:02,757 | INFO     | aborting loop
[2025-10-13 18:21:33] 2025-10-13 16:21:02,830 | INFO     | all job control threads have been joined
[2025-10-13 18:21:33] 2025-10-13 16:21:02,927 | INFO     | all data control threads have been joined
[2025-10-13 18:21:33] 2025-10-13 16:21:03,378 | INFO     | all payload control threads have been joined
[2025-10-13 18:21:33] 2025-10-13 16:21:03,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:21:33] 2025-10-13 16:21:03,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:21:33] 2025-10-13 16:21:03,761 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:03,762 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:03,835 | INFO     | [job] control thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:03,933 | INFO     | [data] control thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:04,080 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:04,383 | INFO     | [payload] control thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:04,536 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:04,619 | INFO     | [job] validate thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:04,709 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:04,808 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:05,073 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:05,323 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:05,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:21:33] 2025-10-13 16:21:05,657 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:06,493 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:07,741 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:13,419 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:21:33] 2025-10-13 16:21:14,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:21:33] 2025-10-13 16:21:22,482 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:21:33] 2025-10-13 16:21:23,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637351933760)>', '<ExcThread(monitor, started 140636858595072)>']
[2025-10-13 18:21:33] 2025-10-13 16:21:28,503 | INFO     | all workflow threads have been joined
[2025-10-13 18:21:33] 2025-10-13 16:21:28,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:21:33] 2025-10-13 16:21:28,504 | INFO     | traces error code: 0
[2025-10-13 18:21:33] 2025-10-13 16:21:28,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:21:33] 2025-10-13 16:21:33,356 | INFO     | PID=1705685 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:21:33] 2025-10-13 16:21:33,356 | INFO     | .. there are 8 such processes running
[2025-10-13 18:21:33] 2025-10-13 16:21:33,358 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:21:33] 2025-10-13 16:21:33,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:21:33] 2025-10-13 16:21:33,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:21:33] 2025-10-13 16:21:33,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:21:33] 2025-10-13 16:21:33,358 | INFO     | [monitor] control thread has ended
[2025-10-13 18:21:33] 2025-10-13 16:21:33,505 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:21:33] 2025-10-13 16:21:33,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:21:33] 2025-10-13 16:21:33,513 [wrapper] pilotpid: 1705685
[2025-10-13 18:21:33] 2025-10-13 16:21:33,516 [wrapper] Pilot exit status: 0
[2025-10-13 18:21:33] 2025-10-13 16:21:33,531 [wrapper] pandaids: 6842179745
[2025-10-13 18:21:33] 2025-10-13 16:21:33,611 [wrapper] cleanup supervisor_pilot 1874208 1705686
[2025-10-13 18:21:33] 2025-10-13 16:21:33,615 [wrapper] Test setup, not cleaning
[2025-10-13 18:21:33] 2025-10-13 16:21:33,618 [wrapper] apfmon messages muted
[2025-10-13 18:21:33] 2025-10-13 16:21:33,622 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:21:33] 2025-10-13 16:21:33,625 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:21:33]  *** Error codes and diagnostics ***
[2025-10-13 18:21:33]     "exeErrorCode": 0,
[2025-10-13 18:21:33]     "exeErrorDiag": "",
[2025-10-13 18:21:33]     "pilotErrorCode": 0,
[2025-10-13 18:21:33]     "pilotErrorDiag": "",
[2025-10-13 18:21:33]  *** Listing of results directory ***
[2025-10-13 18:21:33] total 410508
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc      5112 Oct 13 05:31 queuedata.json
[2025-10-13 18:21:33] -rwx------ 1 boinc boinc     36292 Oct 13 05:31 runpilot2-wrapper.sh
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:21:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:24 run_atlas
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:24 job.xml
[2025-10-13 18:21:33] -rw-r--r-- 2 boinc boinc 224927780 Oct 13 17:24 EVNT.46676267._002548.pool.root.1
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc      6665 Oct 13 17:24 init_data.xml
[2025-10-13 18:21:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:24 start_atlas.sh
[2025-10-13 18:21:33] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:24 shared
[2025-10-13 18:21:33] -rw-r--r-- 2 boinc boinc    569682 Oct 13 17:24 input.tar.gz
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:24 boinc_lockfile
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc      2549 Oct 13 17:24 pandaJob.out
[2025-10-13 18:21:33] -rw------- 1 boinc boinc    972783 Oct 13 17:24 agis_schedconf.cvmfs.json
[2025-10-13 18:21:33] -rw------- 1 boinc boinc   1560580 Oct 13 17:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:21:33] drwx------ 5 boinc boinc      4096 Oct 13 17:24 pilot3
[2025-10-13 18:21:33] -rw------- 1 boinc boinc 189772987 Oct 13 18:20 HITS.46676269._095937.pool.root.1
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc       530 Oct 13 18:20 boinc_task_state.xml
[2025-10-13 18:21:33] -rw------- 1 boinc boinc      1017 Oct 13 18:20 memory_monitor_summary.json
[2025-10-13 18:21:33] -rw------- 1 boinc boinc    371186 Oct 13 18:20 log.46676269._095937.job.log.tgz.1
[2025-10-13 18:21:33] -rw------- 1 boinc boinc      7775 Oct 13 18:21 heartbeat.json
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:21 boinc_mmap_file
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:21 wrapper_checkpoint.txt
[2025-10-13 18:21:33] -rw------- 1 boinc boinc        95 Oct 13 18:21 pilot_heartbeat.json
[2025-10-13 18:21:33] -rw------- 1 boinc boinc       822 Oct 13 18:21 pilotlog.txt
[2025-10-13 18:21:33] -rw------- 1 boinc boinc    507686 Oct 13 18:21 log.46676269._095937.job.log.1
[2025-10-13 18:21:33] -rw------- 1 boinc boinc       357 Oct 13 18:21 output.list
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:21 runtime_log
[2025-10-13 18:21:33] -rw------- 1 boinc boinc    901120 Oct 13 18:21 result.tar.gz
[2025-10-13 18:21:33] -rw------- 1 boinc boinc       663 Oct 13 18:21 wxfLDmjSOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmReVMDmX4GqBn.diag
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc      8764 Oct 13 18:21 runtime_log.err
[2025-10-13 18:21:33] -rw-r--r-- 1 boinc boinc     22157 Oct 13 18:21 stderr.txt
[2025-10-13 18:21:33] HITS file was successfully produced:
[2025-10-13 18:21:33] -rw------- 1 boinc boinc 189772987 Oct 13 18:20 shared/HITS.pool.root.1
[2025-10-13 18:21:33]  *** Contents of shared directory: ***
[2025-10-13 18:21:33] total 406452
[2025-10-13 18:21:33] -rw-r--r-- 2 boinc boinc 224927780 Oct 13 17:24 ATLAS.root_0
[2025-10-13 18:21:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:24 start_atlas.sh
[2025-10-13 18:21:33] -rw-r--r-- 2 boinc boinc    569682 Oct 13 17:24 input.tar.gz
[2025-10-13 18:21:33] -rw------- 1 boinc boinc 189772987 Oct 13 18:20 HITS.pool.root.1
[2025-10-13 18:21:33] -rw------- 1 boinc boinc    901120 Oct 13 18:21 result.tar.gz
18:21:35 (1696615): run_atlas exited; CPU time 35389.644687
18:21:35 (1696615): called boinc_finish(0)

</stderr_txt>
]]>

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