Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:51:44 (1591756): wrapper (7.7.26015): starting
16:51:44 (1591756): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 16:51:44] Arguments: --nthreads 12
[2025-10-13 16:51:44] Threads: 12
[2025-10-13 16:51:44] Checking for CVMFS
[2025-10-13 16:51:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 16:51:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 16:51:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 16:51:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 16:51:44] 2.13.2.0 8715 30631 235168 151664 0 188 40638763 46080001 6454 130560 0 209328480 99.895 56087393 21600 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 16:51:44] CVMFS is ok
[2025-10-13 16:51:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 16:51:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 16:51:44] Further information can be found at the LHC@home message board.
[2025-10-13 16:51:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 16:51:44] Checking for apptainer binary...
[2025-10-13 16:51:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 16:51:44] Running /usr/bin/apptainer --version
[2025-10-13 16:51:44] apptainer version 1.4.2-1.el9
[2025-10-13 16:51:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 16:51:45] mff2104.farm.particle.cz
[2025-10-13 16:51:45] apptainer works
[2025-10-13 16:51:45] Set ATHENA_PROC_NUMBER=12
[2025-10-13 16:51:45] Set ATHENA_CORE_NUMBER=12
[2025-10-13 16:51:45] Starting ATLAS job with PandaID=6842158982
[2025-10-13 16:51:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 17:47:10]  *** The last 200 lines of the pilot log: ***
[2025-10-13 17:47:10]  surl=/scratch/.boinc/slots/5/PanDA_Pilot-6842158982/log.46676269._095896.job.log.tgz.1
[2025-10-13 17:47:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/79/log.46676269._095896.job.log.tgz.1
[2025-10-13 17:47:10]  workdir=None
[2025-10-13 17:47:10] ]
[2025-10-13 17:47:10] 2025-10-13 15:46:10,881 | INFO     | transferring file log.46676269._095896.job.log.tgz.1 from /scratch/.boinc/slots/5/PanDA_Pilot-6842158982/log.46676269._095896.job.log.tgz.1 to /scratch/.boinc/slot
[2025-10-13 17:47:10] 2025-10-13 15:46:10,881 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/5/PanDA_Pilot-6842158982/log.46676269._095896.job.log.tgz.1 /scratch/.boinc/slots/5/log.46676269._095896.j
[2025-10-13 17:47:10] 2025-10-13 15:46:10,910 | INFO     | adding to output.list: log.46676269._095896.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/79/log.46676269._095896.job.log.tg
[2025-10-13 17:47:10] 2025-10-13 15:46:10,911 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 17:47:10] 2025-10-13 15:46:10,911 | INFO     | summary of transferred files:
[2025-10-13 17:47:10] 2025-10-13 15:46:10,911 | INFO     |  -- lfn=log.46676269._095896.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 17:47:10] 2025-10-13 15:46:10,911 | INFO     | stage-out finished correctly
[2025-10-13 17:47:10] 2025-10-13 15:46:11,403 | INFO     | time since job start (3253s) is within the limit (172800.0s)
[2025-10-13 17:47:10] 2025-10-13 15:46:12,620 | INFO     | monitor loop #239: job 0:6842158982 is in state 'finished'
[2025-10-13 17:47:10] 2025-10-13 15:46:12,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:47:10] 2025-10-13 15:46:13,440 | INFO     | time since job start (3255s) is within the limit (172800.0s)
[2025-10-13 17:47:10] 2025-10-13 15:46:13,632 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 17:47:10] 2025-10-13 15:46:15,124 | INFO     | monitor loop #240: job 0:6842158982 is in state 'finished'
[2025-10-13 17:47:10] 2025-10-13 15:46:15,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:47:10] 2025-10-13 15:46:15,303 | INFO     | job 6842158982 has state=finished
[2025-10-13 17:47:10] 2025-10-13 15:46:15,303 | INFO     | preparing for final server update for job 6842158982 in state='finished'
[2025-10-13 17:47:10] 2025-10-13 15:46:15,304 | INFO     | this job has now completed (state=finished)
[2025-10-13 17:47:10] 2025-10-13 15:46:15,304 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 17:47:10] 2025-10-13 15:46:15,304 | INFO     | log transfer has been attempted: DONE
[2025-10-13 17:47:10] 2025-10-13 15:46:15,304 | INFO     | job 6842158982 has finished - writing final server update
[2025-10-13 17:47:10] 2025-10-13 15:46:15,304 | INFO     | total number of processed events: 400 (read)
[2025-10-13 17:47:10] 2025-10-13 15:46:15,305 | INFO     | executing command: lscpu
[2025-10-13 17:47:10] 2025-10-13 15:46:15,381 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 17:47:10] 2025-10-13 15:46:15,446 | INFO     | time since job start (3257s) is within the limit (172800.0s)
[2025-10-13 17:47:10] 2025-10-13 15:46:17,453 | INFO     | time since job start (3259s) is within the limit (172800.0s)
[2025-10-13 17:47:10] 2025-10-13 15:46:17,627 | INFO     | monitor loop #241: job 0:6842158982 is in state 'finished'
[2025-10-13 17:47:10] 2025-10-13 15:46:17,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:47:10] 2025-10-13 15:46:18,879 | INFO     | PID=1595925 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 17:47:10] 2025-10-13 15:46:18,880 | INFO     | .. there are 8 such processes running
[2025-10-13 17:47:10] 2025-10-13 15:46:19,880 | INFO     | time since job start (3261s) is within the limit (172800.0s)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,130 | INFO     | monitor loop #242: job 0:6842158982 is in state 'finished'
[2025-10-13 17:47:10] 2025-10-13 15:46:20,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,451 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 17:47:10] 2025-10-13 15:46:20,465 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2739.3462187499995
[2025-10-13 17:47:10] 2025-10-13 15:46:20,483 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6842158982/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,483 | INFO     | extracted standard info from prmon json
[2025-10-13 17:47:10] 2025-10-13 15:46:20,483 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 17:47:10] 2025-10-13 15:46:20,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 17:47:10] 2025-10-13 15:46:20,484 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 17:47:10] 2025-10-13 15:46:20,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 17:47:10] 2025-10-13 15:46:20,485 | INFO     | fitting pss+swap vs Time
[2025-10-13 17:47:10] 2025-10-13 15:46:20,486 | INFO     | sum of square deviations: 30168007.5
[2025-10-13 17:47:10] 2025-10-13 15:46:20,486 | INFO     | sum of deviations: -25475430.000000022
[2025-10-13 17:47:10] 2025-10-13 15:46:20,486 | INFO     | mean x: 1760368825.5
[2025-10-13 17:47:10] 2025-10-13 15:46:20,486 | INFO     | mean y: 2701622.434782609
[2025-10-13 17:47:10] 2025-10-13 15:46:20,487 | INFO     | -- intersect: 1489248348.7377212
[2025-10-13 17:47:10] 2025-10-13 15:46:20,487 | INFO     | intersect: 1489248348.7377212
[2025-10-13 17:47:10] 2025-10-13 15:46:20,487 | INFO     | chi2: 0.001470438398212083
[2025-10-13 17:47:10] 2025-10-13 15:46:20,487 | INFO     | -- intersect: 1489248348.7377212
[2025-10-13 17:47:10] 2025-10-13 15:46:20,487 | INFO     | current memory leak: -0.84 B/s (using 46 data points, chi2=0.00)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | could have reported an average CPU frequency of 2743 MHz (5 samples)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | ..............................
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | . Timing measurements:
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | . get job = 0 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | . initial setup = 2 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | . payload setup = 6 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,488 | INFO     | . stage-in = 0 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,489 | INFO     | . payload execution = 3223 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,489 | INFO     | . stage-out = 0 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,489 | INFO     | . log creation = 0 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,489 | INFO     | ..............................
[2025-10-13 17:47:10] 2025-10-13 15:46:20,588 | INFO     | 
[2025-10-13 17:47:10] 2025-10-13 15:46:20,588 | INFO     | job summary report
[2025-10-13 17:47:10] 2025-10-13 15:46:20,588 | INFO     | --------------------------------------------------
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | PanDA job id: 6842158982
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | task id: 46676269
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | errors: (none)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | pilot state: finished 
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | transexitcode: 0
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | exeerrorcode: 0
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | exeerrordiag: 
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | exitcode: 0
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | exitmsg: OK
[2025-10-13 17:47:10] 2025-10-13 15:46:20,589 | INFO     | cpuconsumptiontime: 34965 s
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | nevents: 400
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | neventsw: 0
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | pid: 1603004
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | pgrp: 1603004
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | corecount: 12
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | event service: False
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | sizes: {0: 2348858, 6: 2349120, 11: 2349148, 3233: 2374710, 3234: 2374709, 3236: 2383765, 3239: 2383949, 3245: 2384175}
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | --------------------------------------------------
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | 
[2025-10-13 17:47:10] 2025-10-13 15:46:20,590 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 17:47:10] 2025-10-13 15:46:20,621 | INFO     | job 6842158982 has completed (purged errors)
[2025-10-13 17:47:10] 2025-10-13 15:46:20,621 | INFO     | overall cleanup function is called
[2025-10-13 17:47:10] 2025-10-13 15:46:21,630 | INFO     | --- collectZombieJob: --- 10, [1603004]
[2025-10-13 17:47:10] 2025-10-13 15:46:21,631 | INFO     | zombie collector waiting for pid 1603004
[2025-10-13 17:47:10] 2025-10-13 15:46:21,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 17:47:10] 2025-10-13 15:46:21,631 | INFO     | collected zombie processes
[2025-10-13 17:47:10] 2025-10-13 15:46:21,631 | INFO     | will attempt to kill all subprocesses of pid=1603004
[2025-10-13 17:47:10] 2025-10-13 15:46:21,971 | INFO     | process IDs to be killed: [1603004] (in reverse order)
[2025-10-13 17:47:10] 2025-10-13 15:46:22,087 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 17:47:10] 2025-10-13 15:46:22,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 17:47:10] 2025-10-13 15:46:22,099 | INFO     | did not find any defunct processes belonging to 1603004
[2025-10-13 17:47:10] 2025-10-13 15:46:22,110 | INFO     | did not find any defunct processes belonging to 1603004
[2025-10-13 17:47:10] 2025-10-13 15:46:22,110 | INFO     | ready for new job
[2025-10-13 17:47:10] 2025-10-13 15:46:22,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 17:47:10] 2025-10-13 15:46:22,112 | INFO     | ***************************************
[2025-10-13 17:47:10] 2025-10-13 15:46:22,112 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 17:47:10] 2025-10-13 15:46:22,112 | INFO     | ***************************************
[2025-10-13 17:47:10] 2025-10-13 15:46:22,112 | INFO     | 
[2025-10-13 17:47:10] 2025-10-13 15:46:22,119 | INFO     | architecture information:
[2025-10-13 17:47:10] 2025-10-13 15:46:22,119 | INFO     | executing command: cat /etc/os-release
[2025-10-13 17:47:10] 2025-10-13 15:46:22,140 | INFO     | cat /etc/os-release:
[2025-10-13 17:47:10] NAME="CentOS Linux"
[2025-10-13 17:47:10] VERSION="7 (Core)"
[2025-10-13 17:47:10] ID="centos"
[2025-10-13 17:47:10] ID_LIKE="rhel fedora"
[2025-10-13 17:47:10] VERSION_ID="7"
[2025-10-13 17:47:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 17:47:10] ANSI_COLOR="0;31"
[2025-10-13 17:47:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 17:47:10] HOME_URL="https://www.centos.org/"
[2025-10-13 17:47:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 17:47:10] 
[2025-10-13 17:47:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 17:47:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 17:47:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 17:47:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 17:47:10] 
[2025-10-13 17:47:10] 2025-10-13 15:46:22,141 | INFO     | ***************************************
[2025-10-13 17:47:10] 2025-10-13 15:46:22,644 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-10-13 17:47:10] 2025-10-13 15:46:22,673 | INFO     | sufficient remaining disk space (1687798415360 B)
[2025-10-13 17:47:10] 2025-10-13 15:46:22,673 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 17:47:10] 2025-10-13 15:46:22,673 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 17:47:10] 2025-10-13 15:46:22,673 | INFO     | update_server=False
[2025-10-13 17:47:10] 2025-10-13 15:46:22,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 17:47:10] 2025-10-13 15:46:23,169 | INFO     | all data control threads have been joined
[2025-10-13 17:47:10] 2025-10-13 15:46:23,414 | INFO     | all job control threads have been joined
[2025-10-13 17:47:10] 2025-10-13 15:46:23,638 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:47:10] 2025-10-13 15:46:23,639 | INFO     | aborting loop
[2025-10-13 17:47:10] 2025-10-13 15:46:23,679 | INFO     | [job] retrieve thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:23,844 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:23,908 | INFO     | [data] copytool_in thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:23,913 | INFO     | all payload control threads have been joined
[2025-10-13 17:47:10] 2025-10-13 15:46:23,964 | INFO     | [job] validate thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 17:47:10] 2025-10-13 15:46:24,175 | INFO     | [data] control thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,225 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,233 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,235 | INFO     | [payload] failed_post thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,236 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 17:47:10] 2025-10-13 15:46:24,421 | INFO     | [job] control thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,478 | INFO     | [payload] validate_post thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,635 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,644 | INFO     | [job] job monitor thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:24,919 | INFO     | [payload] control thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:25,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 17:47:10] 2025-10-13 15:46:26,033 | INFO     | [data] copytool_out thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:26,603 | INFO     | [job] queue monitor thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:28,237 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 17:47:10] 2025-10-13 15:46:53,394 | INFO     | PID=1595925 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 17:47:10] 2025-10-13 15:46:53,395 | INFO     | .. there are 8 such processes running
[2025-10-13 17:47:10] 2025-10-13 15:46:53,395 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 17:47:10] 2025-10-13 15:46:53,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 17:47:10] 2025-10-13 15:46:53,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 17:47:10] 2025-10-13 15:47:03,216 | INFO     | [monitor] cgroup control has ended
[2025-10-13 17:47:10] 2025-10-13 15:47:05,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223669348160)>', '<ExcThread(monitor, started 140222947907328)>']
[2025-10-13 17:47:10] 2025-10-13 15:47:05,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 17:47:10] 2025-10-13 15:47:05,440 | INFO     | [monitor] control thread has ended
[2025-10-13 17:47:10] 2025-10-13 15:47:10,130 | INFO     | all workflow threads have been joined
[2025-10-13 17:47:10] 2025-10-13 15:47:10,130 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 17:47:10] 2025-10-13 15:47:10,130 | INFO     | traces error code: 0
[2025-10-13 17:47:10] 2025-10-13 15:47:10,131 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 17:47:10] 2025-10-13 15:47:10,255 [wrapper] ==== pilot stdout END ====
[2025-10-13 17:47:10] 2025-10-13 15:47:10,258 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 17:47:10] 2025-10-13 15:47:10,262 [wrapper] pilotpid: 1595925
[2025-10-13 17:47:10] 2025-10-13 15:47:10,265 [wrapper] Pilot exit status: 0
[2025-10-13 17:47:10] 2025-10-13 15:47:10,279 [wrapper] pandaids: 6842158982
[2025-10-13 17:47:10] 2025-10-13 15:47:10,363 [wrapper] cleanup supervisor_pilot 1786348 1595926
[2025-10-13 17:47:10] 2025-10-13 15:47:10,367 [wrapper] Test setup, not cleaning
[2025-10-13 17:47:10] 2025-10-13 15:47:10,371 [wrapper] apfmon messages muted
[2025-10-13 17:47:10] 2025-10-13 15:47:10,374 [wrapper] ==== wrapper stdout END ====
[2025-10-13 17:47:10] 2025-10-13 15:47:10,378 [wrapper] ==== wrapper stderr END ====
[2025-10-13 17:47:10]  *** Error codes and diagnostics ***
[2025-10-13 17:47:10]     "exeErrorCode": 0,
[2025-10-13 17:47:10]     "exeErrorDiag": "",
[2025-10-13 17:47:10]     "pilotErrorCode": 0,
[2025-10-13 17:47:10]     "pilotErrorDiag": "",
[2025-10-13 17:47:10]  *** Listing of results directory ***
[2025-10-13 17:47:10] total 409972
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-13 17:47:10] -rwx------ 1 boinc boinc     36292 Oct 13 05:29 runpilot2-wrapper.sh
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc      5112 Oct 13 05:29 queuedata.json
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc       100 Oct 13 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 17:47:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 16:51 run_atlas
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc       105 Oct 13 16:51 job.xml
[2025-10-13 17:47:10] -rw-r--r-- 2 boinc boinc 220413476 Oct 13 16:51 EVNT.46676267._001360.pool.root.1
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc      6665 Oct 13 16:51 init_data.xml
[2025-10-13 17:47:10] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:51 start_atlas.sh
[2025-10-13 17:47:10] drwxrwx--x 2 boinc boinc      4096 Oct 13 16:51 shared
[2025-10-13 17:47:10] -rw-r--r-- 2 boinc boinc    569684 Oct 13 16:51 input.tar.gz
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc         0 Oct 13 16:51 boinc_lockfile
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc      2550 Oct 13 16:51 pandaJob.out
[2025-10-13 17:47:10] -rw------- 1 boinc boinc    972791 Oct 13 16:51 agis_schedconf.cvmfs.json
[2025-10-13 17:47:10] -rw------- 1 boinc boinc   1560580 Oct 13 16:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 17:47:10] drwx------ 5 boinc boinc      4096 Oct 13 16:51 pilot3
[2025-10-13 17:47:10] -rw------- 1 boinc boinc 193790287 Oct 13 17:45 HITS.46676269._095896.pool.root.1
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc       530 Oct 13 17:45 boinc_task_state.xml
[2025-10-13 17:47:10] -rw------- 1 boinc boinc        95 Oct 13 17:45 pilot_heartbeat.json
[2025-10-13 17:47:10] -rw------- 1 boinc boinc      1017 Oct 13 17:46 memory_monitor_summary.json
[2025-10-13 17:47:10] -rw------- 1 boinc boinc    356893 Oct 13 17:46 log.46676269._095896.job.log.tgz.1
[2025-10-13 17:47:10] -rw------- 1 boinc boinc      7774 Oct 13 17:46 heartbeat.json
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc      8192 Oct 13 17:47 boinc_mmap_file
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc        27 Oct 13 17:47 wrapper_checkpoint.txt
[2025-10-13 17:47:10] -rw------- 1 boinc boinc      4826 Oct 13 17:47 pilotlog.txt
[2025-10-13 17:47:10] -rw------- 1 boinc boinc    493171 Oct 13 17:47 log.46676269._095896.job.log.1
[2025-10-13 17:47:10] -rw------- 1 boinc boinc       357 Oct 13 17:47 output.list
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc       620 Oct 13 17:47 runtime_log
[2025-10-13 17:47:10] -rw------- 1 boinc boinc    870400 Oct 13 17:47 result.tar.gz
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc      8764 Oct 13 17:47 runtime_log.err
[2025-10-13 17:47:10] -rw------- 1 boinc boinc       662 Oct 13 17:47 eojNDmxQOS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmndVMDmLpT9tm.diag
[2025-10-13 17:47:10] -rw-r--r-- 1 boinc boinc     22400 Oct 13 17:47 stderr.txt
[2025-10-13 17:47:10] HITS file was successfully produced:
[2025-10-13 17:47:10] -rw------- 1 boinc boinc 193790287 Oct 13 17:45 shared/HITS.pool.root.1
[2025-10-13 17:47:10]  *** Contents of shared directory: ***
[2025-10-13 17:47:10] total 405936
[2025-10-13 17:47:10] -rw-r--r-- 2 boinc boinc 220413476 Oct 13 16:51 ATLAS.root_0
[2025-10-13 17:47:10] -rw-r--r-- 2 boinc boinc     15120 Oct 13 16:51 start_atlas.sh
[2025-10-13 17:47:10] -rw-r--r-- 2 boinc boinc    569684 Oct 13 16:51 input.tar.gz
[2025-10-13 17:47:10] -rw------- 1 boinc boinc 193790287 Oct 13 17:45 HITS.pool.root.1
[2025-10-13 17:47:10] -rw------- 1 boinc boinc    870400 Oct 13 17:47 result.tar.gz
17:47:11 (1591756): run_atlas exited; CPU time 35032.189518
17:47:11 (1591756): called boinc_finish(0)

</stderr_txt>
]]>

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