Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:30:28 (1725257): wrapper (7.7.26015): starting
17:30:28 (1725257): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 17:30:28] Arguments: --nthreads 12
[2025-10-13 17:30:28] Threads: 12
[2025-10-13 17:30:28] Checking for CVMFS
[2025-10-13 17:30:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:30:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:30:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:30:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:30:28] 2.13.2.0 8715 30670 234432 151666 1 188 40647333 46080001 6454 130560 0 209646463 99.895 56090173 21600 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 17:30:28] CVMFS is ok
[2025-10-13 17:30:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:30:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:30:28] Further information can be found at the LHC@home message board.
[2025-10-13 17:30:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:30:28] Checking for apptainer binary...
[2025-10-13 17:30:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:30:28] Running /usr/bin/apptainer --version
[2025-10-13 17:30:28] apptainer version 1.4.2-1.el9
[2025-10-13 17:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:30:29] mff2104.farm.particle.cz
[2025-10-13 17:30:29] apptainer works
[2025-10-13 17:30:29] Set ATHENA_PROC_NUMBER=12
[2025-10-13 17:30:29] Set ATHENA_CORE_NUMBER=12
[2025-10-13 17:30:29] Starting ATLAS job with PandaID=6842029293
[2025-10-13 17:30:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 18:28:58]  *** The last 200 lines of the pilot log: ***
[2025-10-13 18:28:58] 2025-10-13 16:28:18,197 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 18:28:58] 2025-10-13 16:28:18,256 | INFO     | time since job start (3458s) is within the limit (172800.0s)
[2025-10-13 18:28:58] 2025-10-13 16:28:18,257 | INFO     | 3459s have passed since pilot start - server update state is 'RUNNING'
[2025-10-13 18:28:58] 2025-10-13 16:28:20,262 | INFO     | time since job start (3460s) is within the limit (172800.0s)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,726 | WARNING  | process 1736460 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 18:28:58] 2025-10-13 16:28:20,727 | INFO     | using path: /scratch/.boinc/slots/7/PanDA_Pilot-6842029293/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,727 | INFO     | using path: /scratch/.boinc/slots/7/PanDA_Pilot-6842029293/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,728 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-13 18:28:58] 2025-10-13 16:28:20,728 | WARNING  | maxPSS not found in memory monitor output
[2025-10-13 18:28:58] 2025-10-13 16:28:20,728 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4358752 B
[2025-10-13 18:28:58] 2025-10-13 16:28:20,728 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-10-13 18:28:58] 2025-10-13 16:28:20,728 | INFO     | executing command: df -mP /scratch/.boinc/slots/7
[2025-10-13 18:28:58] 2025-10-13 16:28:20,744 | INFO     | sufficient remaining disk space (1689194070016 B)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,744 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,745 | INFO     | size of work directory /scratch/.boinc/slots/7/PanDA_Pilot-6842029293: 4647923 B (within 2537553920 B limit)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,745 | INFO     | pfn file=/scratch/.boinc/slots/7/PanDA_Pilot-6842029293/HITS.46676269._095727.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,745 | INFO     | total size of present files: 0 B (workdir size: 4647923 B)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,745 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/7/PanDA_Pilot-6842029293/HITS.46676269._095727.pool.root.1 since it does not exist
[2025-10-13 18:28:58] 2025-10-13 16:28:20,951 | INFO     | number of running child processes to parent process 1736460: 1
[2025-10-13 18:28:58] 2025-10-13 16:28:20,951 | INFO     | maximum number of monitored processes: 6
[2025-10-13 18:28:58] 2025-10-13 16:28:20,997 | INFO     | job 6842029293 has state=finished
[2025-10-13 18:28:58] 2025-10-13 16:28:20,997 | INFO     | preparing for final server update for job 6842029293 in state='finished'
[2025-10-13 18:28:58] 2025-10-13 16:28:20,998 | INFO     | this job has now completed (state=finished)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,998 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,998 | INFO     | log transfer has been attempted: DONE
[2025-10-13 18:28:58] 2025-10-13 16:28:20,998 | INFO     | job 6842029293 has finished - writing final server update
[2025-10-13 18:28:58] 2025-10-13 16:28:20,998 | INFO     | total number of processed events: 400 (read)
[2025-10-13 18:28:58] 2025-10-13 16:28:20,999 | INFO     | executing command: lscpu
[2025-10-13 18:28:58] 2025-10-13 16:28:21,061 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 18:28:58] 2025-10-13 16:28:22,268 | INFO     | time since job start (3462s) is within the limit (172800.0s)
[2025-10-13 18:28:58] 2025-10-13 16:28:23,453 | INFO     | monitor loop #250: job 0:6842029293 is in state 'finished'
[2025-10-13 18:28:58] 2025-10-13 16:28:23,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 18:28:58] 2025-10-13 16:28:23,525 | INFO     | PID=1729328 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:28:58] 2025-10-13 16:28:23,525 | INFO     | .. there are 5 such processes running
[2025-10-13 18:28:58] 2025-10-13 16:28:24,525 | INFO     | time since job start (3464s) is within the limit (172800.0s)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,141 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 18:28:58] 2025-10-13 16:28:25,151 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2663.2837916666667
[2025-10-13 18:28:58] 2025-10-13 16:28:25,162 | INFO     | using path: /scratch/.boinc/slots/7/PanDA_Pilot-6842029293/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,163 | INFO     | extracted standard info from prmon json
[2025-10-13 18:28:58] 2025-10-13 16:28:25,163 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 18:28:58] 2025-10-13 16:28:25,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 18:28:58] 2025-10-13 16:28:25,163 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 18:28:58] 2025-10-13 16:28:25,163 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | fitting pss+swap vs Time
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | sum of square deviations: 38744912.5
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | sum of deviations: -483881585.0000001
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | mean x: 1760371268.5
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | mean y: 2724904.96
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | -- intersect: 21987836875.215214
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | intersect: 21987836875.215214
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | chi2: 0.0014741630284446686
[2025-10-13 18:28:58] 2025-10-13 16:28:25,164 | INFO     | -- intersect: 21987836875.215214
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | current memory leak: -12.49 B/s (using 50 data points, chi2=0.00)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | could have reported an average CPU frequency of 2723 MHz (5 samples)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | ..............................
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . Timing measurements:
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . get job = 0 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . initial setup = 1 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . payload setup = 6 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . stage-in = 0 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . payload execution = 3427 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . stage-out = 0 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | . log creation = 0 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,165 | INFO     | ..............................
[2025-10-13 18:28:58] 2025-10-13 16:28:25,228 | INFO     | 
[2025-10-13 18:28:58] 2025-10-13 16:28:25,228 | INFO     | job summary report
[2025-10-13 18:28:58] 2025-10-13 16:28:25,228 | INFO     | --------------------------------------------------
[2025-10-13 18:28:58] 2025-10-13 16:28:25,228 | INFO     | PanDA job id: 6842029293
[2025-10-13 18:28:58] 2025-10-13 16:28:25,228 | INFO     | task id: 46676269
[2025-10-13 18:28:58] 2025-10-13 16:28:25,228 | INFO     | errors: (none)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | pilot state: finished 
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | transexitcode: 0
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | exeerrorcode: 0
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | exeerrordiag: 
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | exitcode: 0
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | exitmsg: OK
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | cpuconsumptiontime: 36264 s
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | nevents: 400
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | neventsw: 0
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | pid: 1736460
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | pgrp: 1736460
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | corecount: 12
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | event service: False
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | sizes: {0: 2348637, 1: 2348836, 6: 2349098, 12: 2349126, 3437: 2374811, 3438: 2383811, 3441: 2383995, 3448: 2384249}
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | --------------------------------------------------
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | 
[2025-10-13 18:28:58] 2025-10-13 16:28:25,229 | INFO     | executing command: ls -lF /scratch/.boinc/slots/7
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | job 6842029293 has completed (purged errors)
[2025-10-13 18:28:58] 2025-10-13 16:28:25,253 | INFO     | overall cleanup function is called
[2025-10-13 18:28:58] 2025-10-13 16:28:26,261 | INFO     | --- collectZombieJob: --- 10, [1736460]
[2025-10-13 18:28:58] 2025-10-13 16:28:26,262 | INFO     | zombie collector waiting for pid 1736460
[2025-10-13 18:28:58] 2025-10-13 16:28:26,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 18:28:58] 2025-10-13 16:28:26,262 | INFO     | collected zombie processes
[2025-10-13 18:28:58] 2025-10-13 16:28:26,262 | INFO     | will attempt to kill all subprocesses of pid=1736460
[2025-10-13 18:28:58] 2025-10-13 16:28:26,460 | INFO     | process IDs to be killed: [1736460] (in reverse order)
[2025-10-13 18:28:58] 2025-10-13 16:28:26,593 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 18:28:58] 2025-10-13 16:28:26,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 18:28:58] 2025-10-13 16:28:26,602 | INFO     | did not find any defunct processes belonging to 1736460
[2025-10-13 18:28:58] 2025-10-13 16:28:26,608 | INFO     | did not find any defunct processes belonging to 1736460
[2025-10-13 18:28:58] 2025-10-13 16:28:26,608 | INFO     | ready for new job
[2025-10-13 18:28:58] 2025-10-13 16:28:26,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 18:28:58] 2025-10-13 16:28:26,609 | INFO     | ***************************************
[2025-10-13 18:28:58] 2025-10-13 16:28:26,610 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 18:28:58] 2025-10-13 16:28:26,610 | INFO     | ***************************************
[2025-10-13 18:28:58] 2025-10-13 16:28:26,610 | INFO     | 
[2025-10-13 18:28:58] 2025-10-13 16:28:26,614 | INFO     | architecture information:
[2025-10-13 18:28:58] 2025-10-13 16:28:26,614 | INFO     | executing command: cat /etc/os-release
[2025-10-13 18:28:58] 2025-10-13 16:28:26,628 | INFO     | cat /etc/os-release:
[2025-10-13 18:28:58] NAME="CentOS Linux"
[2025-10-13 18:28:58] VERSION="7 (Core)"
[2025-10-13 18:28:58] ID="centos"
[2025-10-13 18:28:58] ID_LIKE="rhel fedora"
[2025-10-13 18:28:58] VERSION_ID="7"
[2025-10-13 18:28:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 18:28:58] ANSI_COLOR="0;31"
[2025-10-13 18:28:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 18:28:58] HOME_URL="https://www.centos.org/"
[2025-10-13 18:28:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 18:28:58] 
[2025-10-13 18:28:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 18:28:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 18:28:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 18:28:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 18:28:58] 
[2025-10-13 18:28:58] 2025-10-13 16:28:26,629 | INFO     | ***************************************
[2025-10-13 18:28:58] 2025-10-13 16:28:27,132 | INFO     | executing command: df -mP /scratch/.boinc/slots/7
[2025-10-13 18:28:58] 2025-10-13 16:28:27,151 | INFO     | sufficient remaining disk space (1689199312896 B)
[2025-10-13 18:28:58] 2025-10-13 16:28:27,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 18:28:58] 2025-10-13 16:28:27,151 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 18:28:58] 2025-10-13 16:28:27,151 | INFO     | update_server=False
[2025-10-13 18:28:58] 2025-10-13 16:28:27,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 18:28:58] 2025-10-13 16:28:27,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:28:58] 2025-10-13 16:28:27,152 | INFO     | aborting loop
[2025-10-13 18:28:58] 2025-10-13 16:28:27,152 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 18:28:58] 2025-10-13 16:28:27,756 | INFO     | all payload control threads have been joined
[2025-10-13 18:28:58] 2025-10-13 16:28:28,157 | INFO     | [job] retrieve thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,157 | INFO     | [job] job monitor thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,157 | INFO     | [job] queue monitor thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,172 | INFO     | all data control threads have been joined
[2025-10-13 18:28:58] 2025-10-13 16:28:28,314 | INFO     | [payload] failed_post thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,370 | INFO     | [data] copytool_in thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 18:28:58] 2025-10-13 16:28:28,489 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,661 | INFO     | all job control threads have been joined
[2025-10-13 18:28:58] 2025-10-13 16:28:28,762 | INFO     | [payload] control thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:28,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 18:28:58] 2025-10-13 16:28:28,914 | INFO     | [job] validate thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:29,012 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:29,178 | INFO     | [data] control thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:29,239 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:29,491 | INFO     | [payload] validate_post thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:29,667 | INFO     | [job] control thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:30,390 | INFO     | [data] copytool_out thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:32,772 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:37,714 | INFO     | job.realtimelogging is not enabled
[2025-10-13 18:28:58] 2025-10-13 16:28:38,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 18:28:58] 2025-10-13 16:28:44,940 | INFO     | [monitor] cgroup control has ended
[2025-10-13 18:28:58] 2025-10-13 16:28:46,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139648057644864)>', '<ExcThread(monitor, started 139647439075072)>']
[2025-10-13 18:28:58] 2025-10-13 16:28:51,273 | INFO     | all workflow threads have been joined
[2025-10-13 18:28:58] 2025-10-13 16:28:51,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 18:28:58] 2025-10-13 16:28:51,273 | INFO     | traces error code: 0
[2025-10-13 18:28:58] 2025-10-13 16:28:51,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 18:28:58] 2025-10-13 16:28:57,867 | INFO     | PID=1729328 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 18:28:58] 2025-10-13 16:28:57,867 | INFO     | .. there are 5 such processes running
[2025-10-13 18:28:58] 2025-10-13 16:28:57,868 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 18:28:58] 2025-10-13 16:28:57,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 18:28:58] 2025-10-13 16:28:57,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 18:28:58] 2025-10-13 16:28:57,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 18:28:58] 2025-10-13 16:28:57,868 | INFO     | [monitor] control thread has ended
[2025-10-13 18:28:58] 2025-10-13 16:28:57,989 [wrapper] ==== pilot stdout END ====
[2025-10-13 18:28:58] 2025-10-13 16:28:57,992 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 18:28:58] 2025-10-13 16:28:57,995 [wrapper] pilotpid: 1729328
[2025-10-13 18:28:58] 2025-10-13 16:28:57,997 [wrapper] Pilot exit status: 0
[2025-10-13 18:28:58] 2025-10-13 16:28:58,006 [wrapper] pandaids: 6842029293
[2025-10-13 18:28:58] 2025-10-13 16:28:58,067 [wrapper] cleanup supervisor_pilot 1877358 1729329
[2025-10-13 18:28:58] 2025-10-13 16:28:58,071 [wrapper] Test setup, not cleaning
[2025-10-13 18:28:58] 2025-10-13 16:28:58,074 [wrapper] apfmon messages muted
[2025-10-13 18:28:58] 2025-10-13 16:28:58,076 [wrapper] ==== wrapper stdout END ====
[2025-10-13 18:28:58] 2025-10-13 16:28:58,079 [wrapper] ==== wrapper stderr END ====
[2025-10-13 18:28:58]  *** Error codes and diagnostics ***
[2025-10-13 18:28:58]     "exeErrorCode": 0,
[2025-10-13 18:28:58]     "exeErrorDiag": "",
[2025-10-13 18:28:58]     "pilotErrorCode": 0,
[2025-10-13 18:28:58]     "pilotErrorDiag": "",
[2025-10-13 18:28:58]  *** Listing of results directory ***
[2025-10-13 18:28:58] total 412016
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc    557409 Oct 13 05:15 pilot3.tar.gz
[2025-10-13 18:28:58] -rwx------ 1 boinc boinc     36292 Oct 13 05:20 runpilot2-wrapper.sh
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc      5112 Oct 13 05:20 queuedata.json
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 18:28:58] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:30 run_atlas
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:30 job.xml
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc      6665 Oct 13 17:30 init_data.xml
[2025-10-13 18:28:58] -rw-r--r-- 2 boinc boinc 219963052 Oct 13 17:30 EVNT.46676267._004521.pool.root.1
[2025-10-13 18:28:58] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:30 start_atlas.sh
[2025-10-13 18:28:58] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:30 shared
[2025-10-13 18:28:58] -rw-r--r-- 2 boinc boinc    569684 Oct 13 17:30 input.tar.gz
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:30 boinc_lockfile
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc      2550 Oct 13 17:30 pandaJob.out
[2025-10-13 18:28:58] -rw------- 1 boinc boinc    972783 Oct 13 17:30 agis_schedconf.cvmfs.json
[2025-10-13 18:28:58] -rw------- 1 boinc boinc   1560580 Oct 13 17:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 18:28:58] drwx------ 5 boinc boinc      4096 Oct 13 17:30 pilot3
[2025-10-13 18:28:58] -rw------- 1 boinc boinc 196263039 Oct 13 18:27 HITS.46676269._095727.pool.root.1
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc       529 Oct 13 18:27 boinc_task_state.xml
[2025-10-13 18:28:58] -rw------- 1 boinc boinc      1017 Oct 13 18:28 memory_monitor_summary.json
[2025-10-13 18:28:58] -rw------- 1 boinc boinc    371735 Oct 13 18:28 log.46676269._095727.job.log.tgz.1
[2025-10-13 18:28:58] -rw------- 1 boinc boinc      7775 Oct 13 18:28 heartbeat.json
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc        27 Oct 13 18:28 wrapper_checkpoint.txt
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc      8192 Oct 13 18:28 boinc_mmap_file
[2025-10-13 18:28:58] -rw------- 1 boinc boinc       822 Oct 13 18:28 pilotlog.txt
[2025-10-13 18:28:58] -rw------- 1 boinc boinc        95 Oct 13 18:28 pilot_heartbeat.json
[2025-10-13 18:28:58] -rw------- 1 boinc boinc    516744 Oct 13 18:28 log.46676269._095727.job.log.1
[2025-10-13 18:28:58] -rw------- 1 boinc boinc       357 Oct 13 18:28 output.list
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc       620 Oct 13 18:28 runtime_log
[2025-10-13 18:28:58] -rw------- 1 boinc boinc    911360 Oct 13 18:28 result.tar.gz
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc      8764 Oct 13 18:28 runtime_log.err
[2025-10-13 18:28:58] -rw------- 1 boinc boinc       663 Oct 13 18:28 7QMLDmfHOS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtcmNDm9NvAym.diag
[2025-10-13 18:28:58] -rw-r--r-- 1 boinc boinc     22525 Oct 13 18:28 stderr.txt
[2025-10-13 18:28:58] HITS file was successfully produced:
[2025-10-13 18:28:58] -rw------- 1 boinc boinc 196263039 Oct 13 18:27 shared/HITS.pool.root.1
[2025-10-13 18:28:58]  *** Contents of shared directory: ***
[2025-10-13 18:28:58] total 407948
[2025-10-13 18:28:58] -rw-r--r-- 2 boinc boinc 219963052 Oct 13 17:30 ATLAS.root_0
[2025-10-13 18:28:58] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:30 start_atlas.sh
[2025-10-13 18:28:58] -rw-r--r-- 2 boinc boinc    569684 Oct 13 17:30 input.tar.gz
[2025-10-13 18:28:58] -rw------- 1 boinc boinc 196263039 Oct 13 18:27 HITS.pool.root.1
[2025-10-13 18:28:58] -rw------- 1 boinc boinc    911360 Oct 13 18:28 result.tar.gz
18:29:00 (1725257): run_atlas exited; CPU time 36314.758516
18:29:00 (1725257): called boinc_finish(0)

</stderr_txt>
]]>

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