Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:12:27 (1173629): wrapper (7.7.26015): starting
08:12:27 (1173629): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 08:12:27] Arguments: --nthreads 9
[2025-10-13 08:12:27] Threads: 9
[2025-10-13 08:12:27] Checking for CVMFS
[2025-10-13 08:12:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:12:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:12:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:12:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:12:28] 2.13.2.0 709547 78807 384148 151660 2 650 30588137 32935937 33963 16776704 0 546258422 99.705 404257564 17460 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 08:12:28] CVMFS is ok
[2025-10-13 08:12:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:12:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:12:28] Further information can be found at the LHC@home message board.
[2025-10-13 08:12:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:12:28] Checking for apptainer binary...
[2025-10-13 08:12:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:12:28] Running /usr/bin/apptainer --version
[2025-10-13 08:12:28] apptainer version 1.4.3-1.el9
[2025-10-13 08:12:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:12:29] c7-2-37.aglt2.org
[2025-10-13 08:12:29] apptainer works
[2025-10-13 08:12:29] Set ATHENA_PROC_NUMBER=9
[2025-10-13 08:12:29] Set ATHENA_CORE_NUMBER=9
[2025-10-13 08:12:29] Starting ATLAS job with PandaID=6831124656
[2025-10-13 08:12:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:00:05 (1173629): BOINC client no longer exists - exiting
10:00:05 (1173629): timer handler: client dead, exiting
10:00:14 (1911649): wrapper (7.7.26015): starting
10:00:14 (1911649): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 10:00:14] Arguments: --nthreads 9
[2025-10-13 10:00:14] Threads: 9
[2025-10-13 10:00:14] This job has been restarted, cleaning up previous attempt
[2025-10-13 10:00:14] Checking for CVMFS
[2025-10-13 10:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 10:00:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 10:00:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 10:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 10:00:15] 2.13.2.0 709547 78915 386320 151662 3 596 18841029 32935937 32439 16776704 0 547141309 99.705 405241002 17429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 10:00:15] CVMFS is ok
[2025-10-13 10:00:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 10:00:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 10:00:15] Further information can be found at the LHC@home message board.
[2025-10-13 10:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 10:00:15] Checking for apptainer binary...
[2025-10-13 10:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 10:00:15] Running /usr/bin/apptainer --version
[2025-10-13 10:00:15] apptainer version 1.4.3-1.el9
[2025-10-13 10:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 10:00:15] c7-2-37.aglt2.org
[2025-10-13 10:00:15] apptainer works
[2025-10-13 10:00:15] Set ATHENA_PROC_NUMBER=9
[2025-10-13 10:00:15] Set ATHENA_CORE_NUMBER=9
[2025-10-13 10:00:15] Starting ATLAS job with PandaID=6831124656
[2025-10-13 10:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:56:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:56:49] 2025-10-13 16:56:16,658 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:56:49] 2025-10-13 16:56:16,658 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:56:49] 2025-10-13 16:56:16,660 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:56:49] 2025-10-13 16:56:16,661 | INFO     | sum of square deviations: 1605474129.9768791
[2025-10-13 12:56:49] 2025-10-13 16:56:16,662 | INFO     | sum of deviations: 14550964721.375708
[2025-10-13 12:56:49] 2025-10-13 16:56:16,662 | INFO     | mean x: 1760369297.0115607
[2025-10-13 12:56:49] 2025-10-13 16:56:16,662 | INFO     | mean y: 2181655.3121387283
[2025-10-13 12:56:49] 2025-10-13 16:56:16,662 | INFO     | -- intersect: -15952651287.263563
[2025-10-13 12:56:49] 2025-10-13 16:56:16,662 | INFO     | intersect: -15952651287.263563
[2025-10-13 12:56:49] 2025-10-13 16:56:16,662 | INFO     | chi2: 2.0633458905904054
[2025-10-13 12:56:49] 2025-10-13 16:56:16,663 | INFO     | sum of square deviations: 1470253599.9761908
[2025-10-13 12:56:49] 2025-10-13 16:56:16,663 | INFO     | sum of deviations: 24323485000.523808
[2025-10-13 12:56:49] 2025-10-13 16:56:16,663 | INFO     | mean x: 1760369144.5119047
[2025-10-13 12:56:49] 2025-10-13 16:56:16,664 | INFO     | mean y: 2192407.238095238
[2025-10-13 12:56:49] 2025-10-13 16:56:16,664 | INFO     | -- intersect: -29120887095.926285
[2025-10-13 12:56:49] 2025-10-13 16:56:16,664 | INFO     | intersect: -29120887095.926285
[2025-10-13 12:56:49] 2025-10-13 16:56:16,664 | INFO     | chi2: 1.2491979063034653
[2025-10-13 12:56:49] 2025-10-13 16:56:16,664 | INFO     | current chi2=1.2491979063034653 (change=39.45765894122483 %)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,664 | INFO     | sum of square deviations: 1342847169.97546
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | sum of deviations: 22580836534.312885
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | mean x: 1760368992.01227
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | mean y: 2190322.343558282
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | -- intersect: -29599543469.46883
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | intersect: -29599543469.46883
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | chi2: 1.2492171574093225
[2025-10-13 12:56:49] 2025-10-13 16:56:16,665 | INFO     | current chi2=1.2492171574093225 (change=-0.0015410773393125716 %)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,666 | INFO     | right removable region: 162
[2025-10-13 12:56:49] 2025-10-13 16:56:16,666 | INFO     | sum of square deviations: 1470252379.9761908
[2025-10-13 12:56:49] 2025-10-13 16:56:16,666 | INFO     | sum of deviations: -3867132502.8214283
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | mean x: 1760369449.5119047
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | mean y: 2202077.160714286
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | -- intersect: 4632415235.048338
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | intersect: 4632415235.048338
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | chi2: 0.8864752675036748
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | current chi2=0.8864752675036748 (change=57.037001331365786 %)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,667 | INFO     | sum of square deviations: 1342844729.97546
[2025-10-13 12:56:49] 2025-10-13 16:56:16,668 | INFO     | sum of deviations: -2703059243.2331285
[2025-10-13 12:56:49] 2025-10-13 16:56:16,668 | INFO     | mean x: 1760369602.01227
[2025-10-13 12:56:49] 2025-10-13 16:56:16,668 | INFO     | mean y: 2200714.1165644173
[2025-10-13 12:56:49] 2025-10-13 16:56:16,668 | INFO     | -- intersect: 3545710412.600355
[2025-10-13 12:56:49] 2025-10-13 16:56:16,668 | INFO     | intersect: 3545710412.600355
[2025-10-13 12:56:49] 2025-10-13 16:56:16,669 | INFO     | chi2: 0.8775198093021477
[2025-10-13 12:56:49] 2025-10-13 16:56:16,669 | INFO     | current chi2=0.8775198093021477 (change=1.0102321553477493 %)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,669 | INFO     | left removable region: 20
[2025-10-13 12:56:49] 2025-10-13 16:56:16,669 | INFO     | sum of square deviations: 887816785.4718295
[2025-10-13 12:56:49] 2025-10-13 16:56:16,669 | INFO     | sum of deviations: 4575034297.2042265
[2025-10-13 12:56:49] 2025-10-13 16:56:16,669 | INFO     | mean x: 1760369571.5140846
[2025-10-13 12:56:49] 2025-10-13 16:56:16,670 | INFO     | mean y: 2212171.147887324
[2025-10-13 12:56:49] 2025-10-13 16:56:16,670 | INFO     | -- intersect: -9069199067.322317
[2025-10-13 12:56:49] 2025-10-13 16:56:16,670 | INFO     | intersect: -9069199067.322317
[2025-10-13 12:56:49] 2025-10-13 16:56:16,670 | INFO     | chi2: 0.0384963576988535
[2025-10-13 12:56:49] 2025-10-13 16:56:16,670 | INFO     | -- intersect: -9069199067.322317
[2025-10-13 12:56:49] 2025-10-13 16:56:16,670 | INFO     | current memory leak: 5.15 B/s (using 142 data points, chi2=0.04)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | could have reported an average CPU frequency of 3187 MHz (9 samples)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | ..............................
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . Timing measurements:
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . get job = 0 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . initial setup = 0 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . payload setup = 6 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . stage-in = 0 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . payload execution = 10518 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . stage-out = 2 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | . log creation = 0 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,671 | INFO     | ..............................
[2025-10-13 12:56:49] 2025-10-13 16:56:16,747 | INFO     | 
[2025-10-13 12:56:49] 2025-10-13 16:56:16,747 | INFO     | job summary report
[2025-10-13 12:56:49] 2025-10-13 16:56:16,747 | INFO     | --------------------------------------------------
[2025-10-13 12:56:49] 2025-10-13 16:56:16,747 | INFO     | PanDA job id: 6831124656
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | task id: 46376905
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | errors: (none)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | pilot state: finished 
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | transexitcode: 0
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | exeerrorcode: 0
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | exeerrordiag: 
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | exitcode: 0
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | exitmsg: OK
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | cpuconsumptiontime: 29423 s
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | nevents: 400
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | neventsw: 0
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | pid: 1933797
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | pgrp: 1933797
[2025-10-13 12:56:49] 2025-10-13 16:56:16,748 | INFO     | corecount: 9
[2025-10-13 12:56:49] 2025-10-13 16:56:16,749 | INFO     | event service: False
[2025-10-13 12:56:49] 2025-10-13 16:56:16,749 | INFO     | sizes: {0: 2348645, 1: 2348844, 5: 2349106, 11: 2349162, 10528: 2378424, 10531: 2387606, 10537: 2387808}
[2025-10-13 12:56:49] 2025-10-13 16:56:16,749 | INFO     | --------------------------------------------------
[2025-10-13 12:56:49] 2025-10-13 16:56:16,749 | INFO     | 
[2025-10-13 12:56:49] 2025-10-13 16:56:16,749 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,775 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:56:49] 2025-10-13 16:56:16,776 | INFO     | job 6831124656 has completed (purged errors)
[2025-10-13 12:56:49] 2025-10-13 16:56:16,776 | INFO     | overall cleanup function is called
[2025-10-13 12:56:49] 2025-10-13 16:56:17,784 | INFO     | --- collectZombieJob: --- 10, [1933797]
[2025-10-13 12:56:49] 2025-10-13 16:56:17,784 | INFO     | zombie collector waiting for pid 1933797
[2025-10-13 12:56:49] 2025-10-13 16:56:17,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:56:49] 2025-10-13 16:56:17,785 | INFO     | collected zombie processes
[2025-10-13 12:56:49] 2025-10-13 16:56:17,785 | INFO     | will attempt to kill all subprocesses of pid=1933797
[2025-10-13 12:56:49] 2025-10-13 16:56:18,276 | INFO     | process IDs to be killed: [1933797] (in reverse order)
[2025-10-13 12:56:49] 2025-10-13 16:56:18,454 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:56:49] 2025-10-13 16:56:18,454 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:56:49] 2025-10-13 16:56:18,477 | INFO     | did not find any defunct processes belonging to 1933797
[2025-10-13 12:56:49] 2025-10-13 16:56:18,503 | INFO     | did not find any defunct processes belonging to 1933797
[2025-10-13 12:56:49] 2025-10-13 16:56:18,504 | INFO     | ready for new job
[2025-10-13 12:56:49] 2025-10-13 16:56:18,504 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:56:49] 2025-10-13 16:56:18,506 | INFO     | ***************************************
[2025-10-13 12:56:49] 2025-10-13 16:56:18,506 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-13 12:56:49] 2025-10-13 16:56:18,506 | INFO     | ***************************************
[2025-10-13 12:56:49] 2025-10-13 16:56:18,506 | INFO     | 
[2025-10-13 12:56:49] 2025-10-13 16:56:18,511 | INFO     | architecture information:
[2025-10-13 12:56:49] 2025-10-13 16:56:18,512 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:56:49] 2025-10-13 16:56:18,531 | INFO     | cat /etc/os-release:
[2025-10-13 12:56:49] NAME="CentOS Linux"
[2025-10-13 12:56:49] VERSION="7 (Core)"
[2025-10-13 12:56:49] ID="centos"
[2025-10-13 12:56:49] ID_LIKE="rhel fedora"
[2025-10-13 12:56:49] VERSION_ID="7"
[2025-10-13 12:56:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:56:49] ANSI_COLOR="0;31"
[2025-10-13 12:56:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:56:49] HOME_URL="https://www.centos.org/"
[2025-10-13 12:56:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:56:49] 
[2025-10-13 12:56:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:56:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:56:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:56:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:56:49] 
[2025-10-13 12:56:49] 2025-10-13 16:56:18,531 | INFO     | ***************************************
[2025-10-13 12:56:49] 2025-10-13 16:56:19,033 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 12:56:49] 2025-10-13 16:56:19,054 | INFO     | sufficient remaining disk space (76636225536 B)
[2025-10-13 12:56:49] 2025-10-13 16:56:19,055 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:56:49] 2025-10-13 16:56:19,055 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:56:49] 2025-10-13 16:56:19,055 | INFO     | update_server=False
[2025-10-13 12:56:49] 2025-10-13 16:56:19,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:56:49] 2025-10-13 16:56:19,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:56:49] 2025-10-13 16:56:19,421 | INFO     | all payload control threads have been joined
[2025-10-13 12:56:49] 2025-10-13 16:56:19,434 | INFO     | all data control threads have been joined
[2025-10-13 12:56:49] 2025-10-13 16:56:19,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:56:49] 2025-10-13 16:56:19,551 | INFO     | aborting loop
[2025-10-13 12:56:49] 2025-10-13 16:56:20,015 | INFO     | all job control threads have been joined
[2025-10-13 12:56:49] 2025-10-13 16:56:20,061 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:20,426 | INFO     | [payload] control thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:20,439 | INFO     | [data] control thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:20,556 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:20,761 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,020 | INFO     | [job] control thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,074 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,095 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,197 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,319 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,324 | INFO     | [job] validate thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,547 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,657 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:21,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:56:49] 2025-10-13 16:56:21,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:56:49] 2025-10-13 16:56:22,763 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:25,850 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:29,251 | INFO     | job.realtimelogging is not enabled
[2025-10-13 12:56:49] 2025-10-13 16:56:30,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:56:49] 2025-10-13 16:56:42,873 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:56:49] 2025-10-13 16:56:43,758 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864397838144)>', '<ExcThread(monitor, started 139863898699520)>']
[2025-10-13 12:56:49] 2025-10-13 16:56:48,784 | INFO     | all workflow threads have been joined
[2025-10-13 12:56:49] 2025-10-13 16:56:48,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:56:49] 2025-10-13 16:56:48,785 | INFO     | traces error code: 0
[2025-10-13 12:56:49] 2025-10-13 16:56:48,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:56:49] 2025-10-13 16:56:48,934 | INFO     | PID=1919604 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 12:56:49] 2025-10-13 16:56:48,934 | INFO     | .. there are 38 such processes running
[2025-10-13 12:56:49] 2025-10-13 16:56:48,935 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:56:49] 2025-10-13 16:56:48,935 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:56:49] 2025-10-13 16:56:48,935 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:56:49] 2025-10-13 16:56:48,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:56:49] 2025-10-13 16:56:48,936 | INFO     | [monitor] control thread has ended
[2025-10-13 12:56:49] 2025-10-13 16:56:49,119 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:56:49] 2025-10-13 16:56:49,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:56:49] 2025-10-13 16:56:49,127 [wrapper] pilotpid: 1919604
[2025-10-13 12:56:49] 2025-10-13 16:56:49,130 [wrapper] Pilot exit status: 0
[2025-10-13 12:56:49] 2025-10-13 16:56:49,145 [wrapper] pandaids: 6831124656 6831124656
[2025-10-13 12:56:49] 2025-10-13 16:56:49,287 [wrapper] cleanup supervisor_pilot 2876088 1919605
[2025-10-13 12:56:49] 2025-10-13 16:56:49,290 [wrapper] Test setup, not cleaning
[2025-10-13 12:56:49] 2025-10-13 16:56:49,293 [wrapper] apfmon messages muted
[2025-10-13 12:56:49] 2025-10-13 16:56:49,296 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:56:49] 2025-10-13 16:56:49,298 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:56:49]  *** Error codes and diagnostics ***
[2025-10-13 12:56:49]     "exeErrorCode": 0,
[2025-10-13 12:56:49]     "exeErrorDiag": "",
[2025-10-13 12:56:49]     "pilotErrorCode": 0,
[2025-10-13 12:56:49]     "pilotErrorDiag": "",
[2025-10-13 12:56:49]  *** Listing of results directory ***
[2025-10-13 12:56:49] total 597264
[2025-10-13 12:56:49] drwx------. 4 boincer umatlas      4096 Jul 31 09:00 pilot3
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 04:05 pilot3.tar.gz
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 04:20 queuedata.json
[2025-10-13 12:56:49] -rwx------. 1 boincer umatlas     36292 Oct  5 04:21 runpilot2-wrapper.sh
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas       100 Oct 13 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:56:49] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 08:12 run_atlas
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas       105 Oct 13 08:12 job.xml
[2025-10-13 12:56:49] -rw-r--r--. 3 boincer umatlas 212628737 Oct 13 08:12 EVNT.46376901._002908.pool.root.1
[2025-10-13 12:56:49] -rw-r--r--. 3 boincer umatlas 212628737 Oct 13 08:12 ATLAS.root_0
[2025-10-13 12:56:49] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 08:12 shared
[2025-10-13 12:56:49] -rw-r--r--. 2 boincer umatlas    565604 Oct 13 08:12 input.tar.gz
[2025-10-13 12:56:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 08:12 start_atlas.sh
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas         0 Oct 13 08:12 boinc_lockfile
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas      2519 Oct 13 10:00 pandaJob.out
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas    972489 Oct 13 10:00 agis_schedconf.cvmfs.json
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas 178695127 Oct 13 12:55 HITS.46376905._079515.pool.root.1
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas       530 Oct 13 12:55 boinc_task_state.xml
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas      1050 Oct 13 12:56 memory_monitor_summary.json
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas   1560580 Oct 13 12:56 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas    436699 Oct 13 12:56 log.46376905._079515.job.log.tgz.1
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas      7806 Oct 13 12:56 heartbeat.json
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas      6935 Oct 13 12:56 init_data.xml
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas        28 Oct 13 12:56 wrapper_checkpoint.txt
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas        95 Oct 13 12:56 pilot_heartbeat.json
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas       823 Oct 13 12:56 pilotlog.txt
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 12:56 boinc_mmap_file
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas   1440139 Oct 13 12:56 log.46376905._079515.job.log.1
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas       357 Oct 13 12:56 output.list
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas       620 Oct 13 12:56 runtime_log
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas   1894400 Oct 13 12:56 result.tar.gz
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas       784 Oct 13 12:56 WUrLDmoAZP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7iFMDm4t6PRn.diag
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas      8784 Oct 13 12:56 runtime_log.err
[2025-10-13 12:56:49] -rw-r--r--. 1 boincer umatlas     23251 Oct 13 12:56 stderr.txt
[2025-10-13 12:56:49] HITS file was successfully produced:
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas 178695127 Oct 13 12:55 shared/HITS.pool.root.1
[2025-10-13 12:56:49]  *** Contents of shared directory: ***
[2025-10-13 12:56:49] total 384588
[2025-10-13 12:56:49] -rw-r--r--. 3 boincer umatlas 212628737 Oct 13 08:12 ATLAS.root_0
[2025-10-13 12:56:49] -rw-r--r--. 2 boincer umatlas    565604 Oct 13 08:12 input.tar.gz
[2025-10-13 12:56:49] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 08:12 start_atlas.sh
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas 178695127 Oct 13 12:55 HITS.pool.root.1
[2025-10-13 12:56:49] -rw-------. 1 boincer umatlas   1894400 Oct 13 12:56 result.tar.gz
12:56:50 (1911649): run_atlas exited; CPU time 29890.960933
12:56:50 (1911649): called boinc_finish(0)

</stderr_txt>
]]>

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