Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:57:56 (1178): wrapper (7.7.26015): starting
07:57:56 (1178): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 07:57:56] Arguments: --nthreads 12
[2025-10-13 07:57:56] Threads: 12
[2025-10-13 07:57:56] Checking for CVMFS
[2025-10-13 07:57:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:57:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:57:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:57:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:57:57] 2.11.2.0 3103 14267 89580 151660 0 1 12007258 20275201 1 130560 0 14851183 99.993 478121 46433 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 07:57:57] CVMFS is ok
[2025-10-13 07:57:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:57:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:57:57] Further information can be found at the LHC@home message board.
[2025-10-13 07:57:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:57:57] Checking for apptainer binary...
[2025-10-13 07:57:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:57:57] Running /usr/bin/apptainer --version
[2025-10-13 07:57:57] apptainer version 1.3.2-1.el7
[2025-10-13 07:57:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:57:58] c-115-41.aglt2.org
[2025-10-13 07:57:58] apptainer works
[2025-10-13 07:57:58] Set ATHENA_PROC_NUMBER=12
[2025-10-13 07:57:58] Set ATHENA_CORE_NUMBER=12
[2025-10-13 07:57:58] Starting ATLAS job with PandaID=6842885186
[2025-10-13 07:57:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:05:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:05:49]  mtime=0
[2025-10-13 09:05:49]  protocol_id=None
[2025-10-13 09:05:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 09:05:49]  replicas=None
[2025-10-13 09:05:49]  scope=mc23_13p6TeV
[2025-10-13 09:05:49]  status=None
[2025-10-13 09:05:49]  status_code=0
[2025-10-13 09:05:49]  storage_token=
[2025-10-13 09:05:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6842885186/log.46676269._096760.job.log.tgz.1
[2025-10-13 09:05:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/a2/log.46676269._096760.job.log.tgz.1
[2025-10-13 09:05:49]  workdir=None
[2025-10-13 09:05:49] ]
[2025-10-13 09:05:49] 2025-10-13 13:05:09,548 | INFO     | transferring file log.46676269._096760.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6842885186/log.46676269._096760.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 09:05:49] 2025-10-13 13:05:09,548 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6842885186/log.46676269._096760.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._096760.job
[2025-10-13 09:05:49] 2025-10-13 13:05:09,570 | INFO     | adding to output.list: log.46676269._096760.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/a2/log.46676269._096760.job.log.tg
[2025-10-13 09:05:49] 2025-10-13 13:05:09,571 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 09:05:49] 2025-10-13 13:05:09,571 | INFO     | summary of transferred files:
[2025-10-13 09:05:49] 2025-10-13 13:05:09,571 | INFO     |  -- lfn=log.46676269._096760.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 09:05:49] 2025-10-13 13:05:09,571 | INFO     | stage-out finished correctly
[2025-10-13 09:05:49] 2025-10-13 13:05:09,666 | INFO     | time since job start (4015s) is within the limit (172800.0s)
[2025-10-13 09:05:49] 2025-10-13 13:05:10,679 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 09:05:49] 2025-10-13 13:05:11,672 | INFO     | time since job start (4017s) is within the limit (172800.0s)
[2025-10-13 09:05:49] 2025-10-13 13:05:11,771 | INFO     | job 6842885186 has state=finished
[2025-10-13 09:05:49] 2025-10-13 13:05:11,772 | INFO     | preparing for final server update for job 6842885186 in state='finished'
[2025-10-13 09:05:49] 2025-10-13 13:05:11,772 | INFO     | this job has now completed (state=finished)
[2025-10-13 09:05:49] 2025-10-13 13:05:11,772 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 09:05:49] 2025-10-13 13:05:11,772 | INFO     | log transfer has been attempted: DONE
[2025-10-13 09:05:49] 2025-10-13 13:05:11,773 | INFO     | job 6842885186 has finished - writing final server update
[2025-10-13 09:05:49] 2025-10-13 13:05:11,773 | INFO     | total number of processed events: 400 (read)
[2025-10-13 09:05:49] 2025-10-13 13:05:11,774 | INFO     | executing command: lscpu
[2025-10-13 09:05:49] 2025-10-13 13:05:11,799 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 09:05:49] 2025-10-13 13:05:11,962 | INFO     | monitor loop #301: job 0:6842885186 is in state 'finished'
[2025-10-13 09:05:49] 2025-10-13 13:05:11,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:05:49] 2025-10-13 13:05:13,677 | INFO     | time since job start (4019s) is within the limit (172800.0s)
[2025-10-13 09:05:49] 2025-10-13 13:05:14,465 | INFO     | monitor loop #302: job 0:6842885186 is in state 'finished'
[2025-10-13 09:05:49] 2025-10-13 13:05:14,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 09:05:49] 2025-10-13 13:05:15,682 | INFO     | time since job start (4021s) is within the limit (172800.0s)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,378 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 09:05:49] 2025-10-13 13:05:16,382 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.75
[2025-10-13 09:05:49] 2025-10-13 13:05:16,384 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6842885186/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,385 | INFO     | extracted standard info from prmon json
[2025-10-13 09:05:49] 2025-10-13 13:05:16,385 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 09:05:49] 2025-10-13 13:05:16,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:05:49] 2025-10-13 13:05:16,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:05:49] 2025-10-13 13:05:16,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:05:49] 2025-10-13 13:05:16,388 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:05:49] 2025-10-13 13:05:16,388 | INFO     | sum of square deviations: 63666310.0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,389 | INFO     | sum of deviations: -3644052647.9999995
[2025-10-13 09:05:49] 2025-10-13 13:05:16,389 | INFO     | mean x: 1760358797.0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,389 | INFO     | mean y: 2761426.8983050846
[2025-10-13 09:05:49] 2025-10-13 13:05:16,389 | INFO     | -- intersect: 100759977223.41522
[2025-10-13 09:05:49] 2025-10-13 13:05:16,389 | INFO     | intersect: 100759977223.41522
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | chi2: 0.07354628016843005
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | -- intersect: 100759977223.41522
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | current memory leak: -57.24 B/s (using 59 data points, chi2=0.07)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | could have reported an average CPU frequency of 2133 MHz (6 samples)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | ..............................
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | . Timing measurements:
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | . get job = 0 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,390 | INFO     | . initial setup = 2 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,391 | INFO     | . payload setup = 7 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,391 | INFO     | . stage-in = 0 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,391 | INFO     | . payload execution = 3987 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,391 | INFO     | . stage-out = 0 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,391 | INFO     | . log creation = 0 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,391 | INFO     | ..............................
[2025-10-13 09:05:49] 2025-10-13 13:05:16,467 | INFO     | 
[2025-10-13 09:05:49] 2025-10-13 13:05:16,467 | INFO     | job summary report
[2025-10-13 09:05:49] 2025-10-13 13:05:16,467 | INFO     | --------------------------------------------------
[2025-10-13 09:05:49] 2025-10-13 13:05:16,467 | INFO     | PanDA job id: 6842885186
[2025-10-13 09:05:49] 2025-10-13 13:05:16,467 | INFO     | task id: 46676269
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | errors: (none)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | pilot state: finished 
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | transexitcode: 0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | exeerrorcode: 0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | exeerrordiag: 
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | exitcode: 0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | exitmsg: OK
[2025-10-13 09:05:49] 2025-10-13 13:05:16,468 | INFO     | cpuconsumptiontime: 42644 s
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | nevents: 400
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | neventsw: 0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | pid: 11824
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | pgrp: 11824
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | corecount: 12
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | event service: False
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | sizes: {0: 2348633, 1: 2348832, 5: 2349094, 11: 2349150, 3997: 2374990, 3999: 2383988, 4000: 2384172, 4006: 2384366}
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | --------------------------------------------------
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | 
[2025-10-13 09:05:49] 2025-10-13 13:05:16,469 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 09:05:49] 2025-10-13 13:05:16,492 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,496 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:05:49] 2025-10-13 13:05:16,496 | INFO     | job 6842885186 has completed (purged errors)
[2025-10-13 09:05:49] 2025-10-13 13:05:16,496 | INFO     | overall cleanup function is called
[2025-10-13 09:05:49] 2025-10-13 13:05:17,504 | INFO     | --- collectZombieJob: --- 10, [11824]
[2025-10-13 09:05:49] 2025-10-13 13:05:17,504 | INFO     | zombie collector waiting for pid 11824
[2025-10-13 09:05:49] 2025-10-13 13:05:17,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:05:49] 2025-10-13 13:05:17,504 | INFO     | collected zombie processes
[2025-10-13 09:05:49] 2025-10-13 13:05:17,505 | INFO     | will attempt to kill all subprocesses of pid=11824
[2025-10-13 09:05:49] 2025-10-13 13:05:17,593 | INFO     | process IDs to be killed: [11824] (in reverse order)
[2025-10-13 09:05:49] 2025-10-13 13:05:17,643 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:05:49] 2025-10-13 13:05:17,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:05:49] 2025-10-13 13:05:17,646 | INFO     | did not find any defunct processes belonging to 11824
[2025-10-13 09:05:49] 2025-10-13 13:05:17,648 | INFO     | did not find any defunct processes belonging to 11824
[2025-10-13 09:05:49] 2025-10-13 13:05:17,648 | INFO     | ready for new job
[2025-10-13 09:05:49] 2025-10-13 13:05:17,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:05:49] 2025-10-13 13:05:17,649 | INFO     | ***************************************
[2025-10-13 09:05:49] 2025-10-13 13:05:17,649 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:05:49] 2025-10-13 13:05:17,649 | INFO     | ***************************************
[2025-10-13 09:05:49] 2025-10-13 13:05:17,649 | INFO     | 
[2025-10-13 09:05:49] 2025-10-13 13:05:17,650 | INFO     | architecture information:
[2025-10-13 09:05:49] 2025-10-13 13:05:17,650 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:05:49] 2025-10-13 13:05:17,665 | INFO     | cat /etc/os-release:
[2025-10-13 09:05:49] NAME="CentOS Linux"
[2025-10-13 09:05:49] VERSION="7 (Core)"
[2025-10-13 09:05:49] ID="centos"
[2025-10-13 09:05:49] ID_LIKE="rhel fedora"
[2025-10-13 09:05:49] VERSION_ID="7"
[2025-10-13 09:05:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:05:49] ANSI_COLOR="0;31"
[2025-10-13 09:05:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:05:49] HOME_URL="https://www.centos.org/"
[2025-10-13 09:05:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:05:49] 
[2025-10-13 09:05:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:05:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:05:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:05:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:05:49] 
[2025-10-13 09:05:49] 2025-10-13 13:05:17,665 | INFO     | ***************************************
[2025-10-13 09:05:49] 2025-10-13 13:05:18,168 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 09:05:49] 2025-10-13 13:05:18,184 | INFO     | sufficient remaining disk space (18578669568 B)
[2025-10-13 09:05:49] 2025-10-13 13:05:18,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:05:49] 2025-10-13 13:05:18,185 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:05:49] 2025-10-13 13:05:18,185 | INFO     | update_server=False
[2025-10-13 09:05:49] 2025-10-13 13:05:18,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:05:49] 2025-10-13 13:05:18,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:05:49] 2025-10-13 13:05:18,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:05:49] 2025-10-13 13:05:18,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:05:49] 2025-10-13 13:05:18,186 | INFO     | aborting loop
[2025-10-13 09:05:49] 2025-10-13 13:05:18,871 | INFO     | all data control threads have been joined
[2025-10-13 09:05:49] 2025-10-13 13:05:18,875 | INFO     | all payload control threads have been joined
[2025-10-13 09:05:49] 2025-10-13 13:05:19,191 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,191 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,192 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,390 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,489 | INFO     | all job control threads have been joined
[2025-10-13 09:05:49] 2025-10-13 13:05:19,726 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,774 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,876 | INFO     | [data] control thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:19,880 | INFO     | [payload] control thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,006 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,192 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,399 | INFO     | [job] validate thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,403 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,425 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:05:49] 2025-10-13 13:05:20,494 | INFO     | [job] control thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,620 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:20,631 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:21,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:05:49] 2025-10-13 13:05:25,268 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:05:49] 2025-10-13 13:05:26,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140375475128128)>', '<ExcThread(monitor, started 140374748157696)>']
[2025-10-13 09:05:49] 2025-10-13 13:05:31,907 | INFO     | all workflow threads have been joined
[2025-10-13 09:05:49] 2025-10-13 13:05:31,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:05:49] 2025-10-13 13:05:31,910 | INFO     | traces error code: 0
[2025-10-13 09:05:49] 2025-10-13 13:05:31,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:05:49] 2025-10-13 13:05:48,882 | INFO     | PID=5395 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 09:05:49] 2025-10-13 13:05:48,882 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:05:49] 2025-10-13 13:05:48,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:05:49] 2025-10-13 13:05:48,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:05:49] 2025-10-13 13:05:48,883 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:05:49] 2025-10-13 13:05:48,883 | INFO     | [monitor] control thread has ended
[2025-10-13 09:05:49] 2025-10-13 13:05:48,975 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:05:49] 2025-10-13 13:05:48,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:05:49] 2025-10-13 13:05:48,983 [wrapper] pilotpid: 5395
[2025-10-13 09:05:49] 2025-10-13 13:05:48,987 [wrapper] Pilot exit status: 0
[2025-10-13 09:05:49] 2025-10-13 13:05:49,003 [wrapper] pandaids: 6842885186
[2025-10-13 09:05:49] 2025-10-13 13:05:49,044 [wrapper] cleanup supervisor_pilot 10716 5396
[2025-10-13 09:05:49] 2025-10-13 13:05:49,048 [wrapper] Test setup, not cleaning
[2025-10-13 09:05:49] 2025-10-13 13:05:49,052 [wrapper] apfmon messages muted
[2025-10-13 09:05:49] 2025-10-13 13:05:49,056 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:05:49] 2025-10-13 13:05:49,060 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:05:49]  *** Error codes and diagnostics ***
[2025-10-13 09:05:49]     "exeErrorCode": 0,
[2025-10-13 09:05:49]     "exeErrorDiag": "",
[2025-10-13 09:05:49]     "pilotErrorCode": 0,
[2025-10-13 09:05:49]     "pilotErrorDiag": "",
[2025-10-13 09:05:49]  *** Listing of results directory ***
[2025-10-13 09:05:49] total 417364
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 07:13 pilot3.tar.gz
[2025-10-13 09:05:49] -rwx------ 1 boincer umatlas     36292 Oct 13 07:57 runpilot2-wrapper.sh
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 07:57 queuedata.json
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas       100 Oct 13 07:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:05:49] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 07:57 run_atlas
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas       105 Oct 13 07:57 job.xml
[2025-10-13 09:05:49] -rw-r--r-- 2 boincer umatlas 222206756 Oct 13 07:57 EVNT.46676267._003856.pool.root.1
[2025-10-13 09:05:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 07:57 start_atlas.sh
[2025-10-13 09:05:49] drwxrwx--x 2 boincer umatlas      4096 Oct 13 07:57 shared
[2025-10-13 09:05:49] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 07:57 input.tar.gz
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas         0 Oct 13 07:57 boinc_lockfile
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas      2548 Oct 13 07:57 pandaJob.out
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas    972497 Oct 13 07:58 agis_schedconf.cvmfs.json
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas   1560580 Oct 13 07:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:05:49] drwx------ 5 boincer umatlas      4096 Oct 13 07:58 pilot3
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas      5954 Oct 13 09:01 init_data.xml
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas 199369220 Oct 13 09:04 HITS.46676269._096760.pool.root.1
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas        95 Oct 13 09:05 pilot_heartbeat.json
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas      1058 Oct 13 09:05 memory_monitor_summary.json
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas    365496 Oct 13 09:05 log.46676269._096760.job.log.tgz.1
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas       529 Oct 13 09:05 boinc_task_state.xml
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas      7849 Oct 13 09:05 heartbeat.json
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 09:05 boinc_mmap_file
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas        27 Oct 13 09:05 wrapper_checkpoint.txt
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas       744 Oct 13 09:05 pilotlog.txt
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas    590913 Oct 13 09:05 log.46676269._096760.job.log.1
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas       357 Oct 13 09:05 output.list
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas       620 Oct 13 09:05 runtime_log
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas    972800 Oct 13 09:05 result.tar.gz
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 09:05 runtime_log.err
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas       659 Oct 13 09:05 6QnNDmLMWS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm8jVMDm3NzV5m.diag
[2025-10-13 09:05:49] -rw-r--r-- 1 boincer umatlas     21686 Oct 13 09:05 stderr.txt
[2025-10-13 09:05:49] HITS file was successfully produced:
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas 199369220 Oct 13 09:04 shared/HITS.pool.root.1
[2025-10-13 09:05:49]  *** Contents of shared directory: ***
[2025-10-13 09:05:49] total 413228
[2025-10-13 09:05:49] -rw-r--r-- 2 boincer umatlas 222206756 Oct 13 07:57 ATLAS.root_0
[2025-10-13 09:05:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 07:57 start_atlas.sh
[2025-10-13 09:05:49] -rw-r--r-- 2 boincer umatlas    569683 Oct 13 07:57 input.tar.gz
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas 199369220 Oct 13 09:04 HITS.pool.root.1
[2025-10-13 09:05:49] -rw------- 1 boincer umatlas    972800 Oct 13 09:05 result.tar.gz
09:05:50 (1178): run_atlas exited; CPU time 42641.529335
09:05:50 (1178): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN