Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:17:36 (15949): wrapper (7.7.26015): starting
07:17:36 (15949): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 07:17:36] Arguments: --nthreads 12
[2025-10-13 07:17:36] Threads: 12
[2025-10-13 07:17:36] Checking for CVMFS
[2025-10-13 07:17:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:17:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:17:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:17:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:17:37] 2.11.2.0 2998 39964 92928 151660 1 1 16037518 20275201 1 130560 0 25455292 99.991 1305605 44948 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 07:17:37] CVMFS is ok
[2025-10-13 07:17:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:17:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:17:37] Further information can be found at the LHC@home message board.
[2025-10-13 07:17:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:17:37] Checking for apptainer binary...
[2025-10-13 07:17:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:17:37] Running /usr/bin/apptainer --version
[2025-10-13 07:17:37] apptainer version 1.3.2-1.el7
[2025-10-13 07:17:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:17:38] c-205-12.aglt2.org
[2025-10-13 07:17:38] apptainer works
[2025-10-13 07:17:38] Set ATHENA_PROC_NUMBER=12
[2025-10-13 07:17:38] Set ATHENA_CORE_NUMBER=12
[2025-10-13 07:17:38] Starting ATLAS job with PandaID=6840962120
[2025-10-13 07:17:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:29:07]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:29:07]  replicas=None
[2025-10-13 08:29:07]  scope=mc23_13p6TeV
[2025-10-13 08:29:07]  status=None
[2025-10-13 08:29:07]  status_code=0
[2025-10-13 08:29:07]  storage_token=
[2025-10-13 08:29:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840962120/log.46676269._092091.job.log.tgz.1
[2025-10-13 08:29:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/0b/log.46676269._092091.job.log.tgz.1
[2025-10-13 08:29:07]  workdir=None
[2025-10-13 08:29:07] ]
[2025-10-13 08:29:07] 2025-10-13 12:27:57,146 | INFO     | transferring file log.46676269._092091.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840962120/log.46676269._092091.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 08:29:07] 2025-10-13 12:27:57,146 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840962120/log.46676269._092091.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._092091.job
[2025-10-13 08:29:07] 2025-10-13 12:27:57,168 | INFO     | adding to output.list: log.46676269._092091.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cf/0b/log.46676269._092091.job.log.tg
[2025-10-13 08:29:07] 2025-10-13 12:27:57,169 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:29:07] 2025-10-13 12:27:57,169 | INFO     | summary of transferred files:
[2025-10-13 08:29:07] 2025-10-13 12:27:57,169 | INFO     |  -- lfn=log.46676269._092091.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:29:07] 2025-10-13 12:27:57,169 | INFO     | stage-out finished correctly
[2025-10-13 08:29:07] 2025-10-13 12:27:57,955 | INFO     | time since job start (4203s) is within the limit (172800.0s)
[2025-10-13 08:29:07] 2025-10-13 12:27:59,403 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:29:07] 2025-10-13 12:27:59,619 | WARNING  | process 26177 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 08:29:07] 2025-10-13 12:27:59,619 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840962120/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:29:07] 2025-10-13 12:27:59,708 | INFO     | number of running child processes to parent process 26177: 1
[2025-10-13 08:29:07] 2025-10-13 12:27:59,708 | INFO     | maximum number of monitored processes: 6
[2025-10-13 08:29:07] 2025-10-13 12:27:59,954 | INFO     | job 6840962120 has state=finished
[2025-10-13 08:29:07] 2025-10-13 12:27:59,954 | INFO     | preparing for final server update for job 6840962120 in state='finished'
[2025-10-13 08:29:07] 2025-10-13 12:27:59,954 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:29:07] 2025-10-13 12:27:59,955 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:29:07] 2025-10-13 12:27:59,955 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:29:07] 2025-10-13 12:27:59,955 | INFO     | job 6840962120 has finished - writing final server update
[2025-10-13 08:29:07] 2025-10-13 12:27:59,955 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:29:07] 2025-10-13 12:27:59,956 | INFO     | executing command: lscpu
[2025-10-13 08:29:07] 2025-10-13 12:27:59,962 | INFO     | time since job start (4205s) is within the limit (172800.0s)
[2025-10-13 08:29:07] 2025-10-13 12:27:59,982 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:29:07] 2025-10-13 12:28:01,967 | INFO     | time since job start (4207s) is within the limit (172800.0s)
[2025-10-13 08:29:07] 2025-10-13 12:28:02,211 | INFO     | monitor loop #316: job 0:6840962120 is in state 'finished'
[2025-10-13 08:29:07] 2025-10-13 12:28:02,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:29:07] 2025-10-13 12:28:03,973 | INFO     | time since job start (4209s) is within the limit (172800.0s)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,597 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 08:29:07] 2025-10-13 12:28:04,600 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2025-10-13 08:29:07] 2025-10-13 12:28:04,603 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840962120/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,603 | INFO     | extracted standard info from prmon json
[2025-10-13 08:29:07] 2025-10-13 12:28:04,604 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:29:07] 2025-10-13 12:28:04,604 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:29:07] 2025-10-13 12:28:04,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:29:07] 2025-10-13 12:28:04,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:29:07] 2025-10-13 12:28:04,606 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:29:07] 2025-10-13 12:28:04,606 | INFO     | sum of square deviations: 73882315.5
[2025-10-13 08:29:07] 2025-10-13 12:28:04,607 | INFO     | sum of deviations: -2600320139.0
[2025-10-13 08:29:07] 2025-10-13 12:28:04,607 | INFO     | mean x: 1760356468.5
[2025-10-13 08:29:07] 2025-10-13 12:28:04,607 | INFO     | mean y: 2933592.193548387
[2025-10-13 08:29:07] 2025-10-13 12:28:04,607 | INFO     | -- intersect: 61959443020.481155
[2025-10-13 08:29:07] 2025-10-13 12:28:04,607 | INFO     | intersect: 61959443020.481155
[2025-10-13 08:29:07] 2025-10-13 12:28:04,608 | INFO     | chi2: 0.0968441162727412
[2025-10-13 08:29:07] 2025-10-13 12:28:04,608 | INFO     | -- intersect: 61959443020.481155
[2025-10-13 08:29:07] 2025-10-13 12:28:04,608 | INFO     | current memory leak: -35.20 B/s (using 62 data points, chi2=0.10)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,608 | INFO     | could have reported an average CPU frequency of 2061 MHz (6 samples)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | ..............................
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . Timing measurements:
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . get job = 0 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . initial setup = 2 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . payload setup = 7 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . stage-in = 0 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . payload execution = 4174 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,609 | INFO     | . stage-out = 0 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,610 | INFO     | . log creation = 0 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,610 | INFO     | ..............................
[2025-10-13 08:29:07] 2025-10-13 12:28:04,691 | INFO     | 
[2025-10-13 08:29:07] 2025-10-13 12:28:04,691 | INFO     | job summary report
[2025-10-13 08:29:07] 2025-10-13 12:28:04,692 | INFO     | --------------------------------------------------
[2025-10-13 08:29:07] 2025-10-13 12:28:04,692 | INFO     | PanDA job id: 6840962120
[2025-10-13 08:29:07] 2025-10-13 12:28:04,692 | INFO     | task id: 46676269
[2025-10-13 08:29:07] 2025-10-13 12:28:04,692 | INFO     | errors: (none)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:29:07] 2025-10-13 12:28:04,692 | INFO     | pilot state: finished 
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | transexitcode: 0
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | exeerrorcode: 0
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | exeerrordiag: 
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | exitcode: 0
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | exitmsg: OK
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | cpuconsumptiontime: 44636 s
[2025-10-13 08:29:07] 2025-10-13 12:28:04,693 | INFO     | nevents: 400
[2025-10-13 08:29:07] 2025-10-13 12:28:04,694 | INFO     | neventsw: 0
[2025-10-13 08:29:07] 2025-10-13 12:28:04,694 | INFO     | pid: 26177
[2025-10-13 08:29:07] 2025-10-13 12:28:04,694 | INFO     | pgrp: 26177
[2025-10-13 08:29:07] 2025-10-13 12:28:04,694 | INFO     | corecount: 12
[2025-10-13 08:29:07] 2025-10-13 12:28:04,694 | INFO     | event service: False
[2025-10-13 08:29:07] 2025-10-13 12:28:04,694 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 4185: 2375072, 4187: 2384070, 4190: 2384254, 4195: 2384448}
[2025-10-13 08:29:07] 2025-10-13 12:28:04,695 | INFO     | --------------------------------------------------
[2025-10-13 08:29:07] 2025-10-13 12:28:04,695 | INFO     | 
[2025-10-13 08:29:07] 2025-10-13 12:28:04,695 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 08:29:07] 2025-10-13 12:28:04,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,721 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,721 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,721 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,721 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,724 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:29:07] 2025-10-13 12:28:04,724 | INFO     | job 6840962120 has completed (purged errors)
[2025-10-13 08:29:07] 2025-10-13 12:28:04,724 | INFO     | overall cleanup function is called
[2025-10-13 08:29:07] 2025-10-13 12:28:05,732 | INFO     | --- collectZombieJob: --- 10, [26177]
[2025-10-13 08:29:07] 2025-10-13 12:28:05,732 | INFO     | zombie collector waiting for pid 26177
[2025-10-13 08:29:07] 2025-10-13 12:28:05,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:29:07] 2025-10-13 12:28:05,733 | INFO     | collected zombie processes
[2025-10-13 08:29:07] 2025-10-13 12:28:05,733 | INFO     | will attempt to kill all subprocesses of pid=26177
[2025-10-13 08:29:07] 2025-10-13 12:28:05,825 | INFO     | process IDs to be killed: [26177] (in reverse order)
[2025-10-13 08:29:07] 2025-10-13 12:28:05,874 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:29:07] 2025-10-13 12:28:05,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:29:07] 2025-10-13 12:28:05,879 | INFO     | did not find any defunct processes belonging to 26177
[2025-10-13 08:29:07] 2025-10-13 12:28:05,881 | INFO     | did not find any defunct processes belonging to 26177
[2025-10-13 08:29:07] 2025-10-13 12:28:05,882 | INFO     | ready for new job
[2025-10-13 08:29:07] 2025-10-13 12:28:05,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:29:07] 2025-10-13 12:28:05,883 | INFO     | ***************************************
[2025-10-13 08:29:07] 2025-10-13 12:28:05,883 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:29:07] 2025-10-13 12:28:05,883 | INFO     | ***************************************
[2025-10-13 08:29:07] 2025-10-13 12:28:05,883 | INFO     | 
[2025-10-13 08:29:07] 2025-10-13 12:28:05,884 | INFO     | architecture information:
[2025-10-13 08:29:07] 2025-10-13 12:28:05,884 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:29:07] 2025-10-13 12:28:05,898 | INFO     | cat /etc/os-release:
[2025-10-13 08:29:07] NAME="CentOS Linux"
[2025-10-13 08:29:07] VERSION="7 (Core)"
[2025-10-13 08:29:07] ID="centos"
[2025-10-13 08:29:07] ID_LIKE="rhel fedora"
[2025-10-13 08:29:07] VERSION_ID="7"
[2025-10-13 08:29:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:29:07] ANSI_COLOR="0;31"
[2025-10-13 08:29:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:29:07] HOME_URL="https://www.centos.org/"
[2025-10-13 08:29:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:29:07] 
[2025-10-13 08:29:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:29:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:29:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:29:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:29:07] 
[2025-10-13 08:29:07] 2025-10-13 12:28:05,898 | INFO     | ***************************************
[2025-10-13 08:29:07] 2025-10-13 12:28:06,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 08:29:07] 2025-10-13 12:28:06,417 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-13 08:29:07] 2025-10-13 12:28:06,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:29:07] 2025-10-13 12:28:06,417 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:29:07] 2025-10-13 12:28:06,418 | INFO     | update_server=False
[2025-10-13 08:29:07] 2025-10-13 12:28:06,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:29:07] 2025-10-13 12:28:06,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:29:07] 2025-10-13 12:28:06,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:29:07] 2025-10-13 12:28:06,419 | INFO     | aborting loop
[2025-10-13 08:29:07] 2025-10-13 12:28:06,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:29:07] 2025-10-13 12:28:06,431 | INFO     | all data control threads have been joined
[2025-10-13 08:29:07] 2025-10-13 12:28:07,335 | INFO     | all job control threads have been joined
[2025-10-13 08:29:07] 2025-10-13 12:28:07,342 | INFO     | all payload control threads have been joined
[2025-10-13 08:29:07] 2025-10-13 12:28:07,422 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:07,423 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:07,424 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:07,437 | INFO     | [data] control thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:07,656 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:07,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:29:07] 2025-10-13 12:28:07,893 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,305 | INFO     | [job] validate thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,344 | INFO     | [job] control thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,348 | INFO     | [payload] control thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,387 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,526 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,803 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:08,845 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:09,770 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:10,425 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:16,997 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:29:07] 2025-10-13 12:28:18,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:29:07] 2025-10-13 12:28:37,180 | INFO     | PID=19653 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 08:29:07] 2025-10-13 12:28:37,180 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:29:07] 2025-10-13 12:28:37,180 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:29:07] 2025-10-13 12:28:37,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:29:07] 2025-10-13 12:29:00,275 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:29:07] 2025-10-13 12:29:01,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927150970688)>', '<ExcThread(monitor, started 139926209296128)>']
[2025-10-13 08:29:07] 2025-10-13 12:29:02,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:29:07] 2025-10-13 12:29:02,302 | INFO     | [monitor] control thread has ended
[2025-10-13 08:29:07] 2025-10-13 12:29:06,778 | INFO     | all workflow threads have been joined
[2025-10-13 08:29:07] 2025-10-13 12:29:06,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:29:07] 2025-10-13 12:29:06,779 | INFO     | traces error code: 0
[2025-10-13 08:29:07] 2025-10-13 12:29:06,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:29:07] 2025-10-13 12:29:06,882 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:29:07] 2025-10-13 12:29:06,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:29:07] 2025-10-13 12:29:06,890 [wrapper] pilotpid: 19653
[2025-10-13 08:29:07] 2025-10-13 12:29:06,894 [wrapper] Pilot exit status: 0
[2025-10-13 08:29:07] 2025-10-13 12:29:06,910 [wrapper] pandaids: 6840962120
[2025-10-13 08:29:07] 2025-10-13 12:29:06,958 [wrapper] cleanup supervisor_pilot  8676 19654
[2025-10-13 08:29:07] 2025-10-13 12:29:06,962 [wrapper] Test setup, not cleaning
[2025-10-13 08:29:07] 2025-10-13 12:29:06,966 [wrapper] apfmon messages muted
[2025-10-13 08:29:07] 2025-10-13 12:29:06,970 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:29:07] 2025-10-13 12:29:06,974 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:29:07]  *** Error codes and diagnostics ***
[2025-10-13 08:29:07]     "exeErrorCode": 0,
[2025-10-13 08:29:07]     "exeErrorDiag": "",
[2025-10-13 08:29:07]     "pilotErrorCode": 0,
[2025-10-13 08:29:07]     "pilotErrorDiag": "",
[2025-10-13 08:29:07]  *** Listing of results directory ***
[2025-10-13 08:29:07] total 411728
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 19:17 queuedata.json
[2025-10-13 08:29:07] -rwx------ 1 boincer umatlas     36292 Oct 12 19:18 runpilot2-wrapper.sh
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas       100 Oct 13 07:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:29:07] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 07:17 run_atlas
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas       105 Oct 13 07:17 job.xml
[2025-10-13 08:29:07] -rw-r--r-- 2 boincer umatlas 221288353 Oct 13 07:17 EVNT.46676267._004653.pool.root.1
[2025-10-13 08:29:07] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 07:17 start_atlas.sh
[2025-10-13 08:29:07] drwxrwx--x 2 boincer umatlas      4096 Oct 13 07:17 shared
[2025-10-13 08:29:07] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 07:17 input.tar.gz
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas         0 Oct 13 07:17 boinc_lockfile
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas      2550 Oct 13 07:17 pandaJob.out
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas    972497 Oct 13 07:17 agis_schedconf.cvmfs.json
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas   1560580 Oct 13 07:17 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:29:07] drwx------ 5 boincer umatlas      4096 Oct 13 07:17 pilot3
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas 194415413 Oct 13 08:27 HITS.46676269._092091.pool.root.1
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas       529 Oct 13 08:27 boinc_task_state.xml
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas        95 Oct 13 08:27 pilot_heartbeat.json
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas      1047 Oct 13 08:27 memory_monitor_summary.json
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas    385888 Oct 13 08:27 log.46676269._092091.job.log.tgz.1
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 08:28 init_data.xml
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas      7847 Oct 13 08:28 heartbeat.json
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas        27 Oct 13 08:29 wrapper_checkpoint.txt
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 08:29 boinc_mmap_file
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas      4818 Oct 13 08:29 pilotlog.txt
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas    616579 Oct 13 08:29 log.46676269._092091.job.log.1
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas       357 Oct 13 08:29 output.list
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas       620 Oct 13 08:29 runtime_log
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas   1024000 Oct 13 08:29 result.tar.gz
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas       659 Oct 13 08:29 hACMDm8VKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmY1lNDmrYH8tm.diag
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 08:29 runtime_log.err
[2025-10-13 08:29:07] -rw-r--r-- 1 boincer umatlas     21813 Oct 13 08:29 stderr.txt
[2025-10-13 08:29:07] HITS file was successfully produced:
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas 194415413 Oct 13 08:27 shared/HITS.pool.root.1
[2025-10-13 08:29:07]  *** Contents of shared directory: ***
[2025-10-13 08:29:07] total 407544
[2025-10-13 08:29:07] -rw-r--r-- 2 boincer umatlas 221288353 Oct 13 07:17 ATLAS.root_0
[2025-10-13 08:29:07] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 07:17 start_atlas.sh
[2025-10-13 08:29:07] -rw-r--r-- 2 boincer umatlas    569681 Oct 13 07:17 input.tar.gz
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas 194415413 Oct 13 08:27 HITS.pool.root.1
[2025-10-13 08:29:07] -rw------- 1 boincer umatlas   1024000 Oct 13 08:29 result.tar.gz
08:29:09 (15949): run_atlas exited; CPU time 44632.698290
08:29:09 (15949): called boinc_finish(0)

</stderr_txt>
]]>

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