Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:08:20 (2911120): wrapper (7.7.26015): starting
07:08:20 (2911120): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 07:08:20] Arguments: --nthreads 8
[2025-10-13 07:08:20] Threads: 8
[2025-10-13 07:08:20] Checking for CVMFS
[2025-10-13 07:08:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:08:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:08:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:08:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:08:21] 2.10.1.0 4440 188431 164276 151658 0 57 17238637 18432001 2749 130560 2 228307371 99.991 7184109 5581 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-10-13 07:08:21] CVMFS is ok
[2025-10-13 07:08:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:08:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:08:21] Further information can be found at the LHC@home message board.
[2025-10-13 07:08:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:08:21] Checking for apptainer binary...
[2025-10-13 07:08:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:08:21] Running /usr/bin/apptainer --version
[2025-10-13 07:08:21] apptainer version 1.1.9-1.el8
[2025-10-13 07:08:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:08:21] c-16-31.aglt2.org
[2025-10-13 07:08:21] apptainer works
[2025-10-13 07:08:21] Set ATHENA_PROC_NUMBER=8
[2025-10-13 07:08:21] Set ATHENA_CORE_NUMBER=8
[2025-10-13 07:08:21] Starting ATLAS job with PandaID=6842731834
[2025-10-13 07:08:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:48:02]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:48:02] 2025-10-13 12:47:18,170 | INFO     | transferring file log.46676269._096510.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6842731834/log.46676269._096510.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 08:48:02] 2025-10-13 12:47:18,170 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6842731834/log.46676269._096510.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._096510.job
[2025-10-13 08:48:02] 2025-10-13 12:47:18,183 | INFO     | adding to output.list: log.46676269._096510.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/3f/log.46676269._096510.job.log.tg
[2025-10-13 08:48:02] 2025-10-13 12:47:18,183 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:48:02] 2025-10-13 12:47:18,184 | INFO     | summary of transferred files:
[2025-10-13 08:48:02] 2025-10-13 12:47:18,184 | INFO     |  -- lfn=log.46676269._096510.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:48:02] 2025-10-13 12:47:18,184 | INFO     | stage-out finished correctly
[2025-10-13 08:48:02] 2025-10-13 12:47:18,587 | INFO     | time since job start (5925s) is within the limit (172800.0s)
[2025-10-13 08:48:02] 2025-10-13 12:47:19,306 | INFO     | monitor loop #447: job 0:6842731834 is in state 'finished'
[2025-10-13 08:48:02] 2025-10-13 12:47:19,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:48:02] 2025-10-13 12:47:20,592 | INFO     | time since job start (5927s) is within the limit (172800.0s)
[2025-10-13 08:48:02] 2025-10-13 12:47:20,816 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:48:02] 2025-10-13 12:47:21,809 | INFO     | monitor loop #448: job 0:6842731834 is in state 'finished'
[2025-10-13 08:48:02] 2025-10-13 12:47:21,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:48:02] 2025-10-13 12:47:22,598 | INFO     | time since job start (5929s) is within the limit (172800.0s)
[2025-10-13 08:48:02] 2025-10-13 12:47:23,489 | INFO     | job 6842731834 has state=finished
[2025-10-13 08:48:02] 2025-10-13 12:47:23,489 | INFO     | preparing for final server update for job 6842731834 in state='finished'
[2025-10-13 08:48:02] 2025-10-13 12:47:23,489 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:48:02] 2025-10-13 12:47:23,490 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:48:02] 2025-10-13 12:47:23,490 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:48:02] 2025-10-13 12:47:23,490 | INFO     | job 6842731834 has finished - writing final server update
[2025-10-13 08:48:02] 2025-10-13 12:47:23,490 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:48:02] 2025-10-13 12:47:23,491 | INFO     | executing command: lscpu
[2025-10-13 08:48:02] 2025-10-13 12:47:23,538 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:48:02] 2025-10-13 12:47:24,312 | INFO     | monitor loop #449: job 0:6842731834 is in state 'finished'
[2025-10-13 08:48:02] 2025-10-13 12:47:24,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:48:02] 2025-10-13 12:47:24,603 | INFO     | time since job start (5931s) is within the limit (172800.0s)
[2025-10-13 08:48:02] 2025-10-13 12:47:26,608 | INFO     | time since job start (5933s) is within the limit (172800.0s)
[2025-10-13 08:48:02] 2025-10-13 12:47:26,814 | INFO     | monitor loop #450: job 0:6842731834 is in state 'finished'
[2025-10-13 08:48:02] 2025-10-13 12:47:26,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:48:02] 2025-10-13 12:47:28,613 | INFO     | time since job start (5935s) is within the limit (172800.0s)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,043 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 08:48:02] 2025-10-13 12:47:29,062 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 3222.871125
[2025-10-13 08:48:02] 2025-10-13 12:47:29,066 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6842731834/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,067 | INFO     | extracted standard info from prmon json
[2025-10-13 08:48:02] 2025-10-13 12:47:29,067 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:48:02] 2025-10-13 12:47:29,067 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:48:02] 2025-10-13 12:47:29,067 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:48:02] 2025-10-13 12:47:29,067 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:48:02] 2025-10-13 12:47:29,069 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:48:02] 2025-10-13 12:47:29,069 | INFO     | sum of square deviations: 226022842.5
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | sum of deviations: 295445783.5000001
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | mean x: 1760356758.5
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | mean y: 2542064.433333333
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | -- intersect: -2298508466.574624
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | intersect: -2298508466.574624
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | chi2: 0.0360065535807594
[2025-10-13 08:48:02] 2025-10-13 12:47:29,070 | INFO     | -- intersect: -2298508466.574624
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | current memory leak: 1.31 B/s (using 90 data points, chi2=0.04)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | could have reported an average CPU frequency of 3093 MHz (7 samples)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | ..............................
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | . Timing measurements:
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | . get job = 0 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | . initial setup = 2 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | . payload setup = 5 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,071 | INFO     | . stage-in = 0 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,072 | INFO     | . payload execution = 5898 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,072 | INFO     | . stage-out = 0 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,072 | INFO     | . log creation = 0 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,072 | INFO     | ..............................
[2025-10-13 08:48:02] 2025-10-13 12:47:29,556 | INFO     | 
[2025-10-13 08:48:02] 2025-10-13 12:47:29,556 | INFO     | job summary report
[2025-10-13 08:48:02] 2025-10-13 12:47:29,556 | INFO     | --------------------------------------------------
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | PanDA job id: 6842731834
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | task id: 46676269
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | errors: (none)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | pilot state: finished 
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | transexitcode: 0
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | exeerrorcode: 0
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | exeerrordiag: 
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | exitcode: 0
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | exitmsg: OK
[2025-10-13 08:48:02] 2025-10-13 12:47:29,557 | INFO     | cpuconsumptiontime: 43819 s
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | nevents: 400
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | neventsw: 0
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | pid: 2934143
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | pgrp: 2934143
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | corecount: 8
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | event service: False
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 12: 2349152, 5906: 2375845, 5907: 2375844, 5909: 2385026, 5912: 2385082, 5920: 2385276}
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | --------------------------------------------------
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | 
[2025-10-13 08:48:02] 2025-10-13 12:47:29,558 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 08:48:02] 2025-10-13 12:47:29,576 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:48:02] 2025-10-13 12:47:29,579 | INFO     | job 6842731834 has completed (purged errors)
[2025-10-13 08:48:02] 2025-10-13 12:47:29,579 | INFO     | overall cleanup function is called
[2025-10-13 08:48:02] 2025-10-13 12:47:29,858 | INFO     | PID=2918089 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:48:02] 2025-10-13 12:47:29,858 | INFO     | .. there are 2 such processes running
[2025-10-13 08:48:02] 2025-10-13 12:47:30,586 | INFO     | --- collectZombieJob: --- 10, [2934143]
[2025-10-13 08:48:02] 2025-10-13 12:47:30,586 | INFO     | zombie collector waiting for pid 2934143
[2025-10-13 08:48:02] 2025-10-13 12:47:30,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:48:02] 2025-10-13 12:47:30,586 | INFO     | collected zombie processes
[2025-10-13 08:48:02] 2025-10-13 12:47:30,587 | INFO     | will attempt to kill all subprocesses of pid=2934143
[2025-10-13 08:48:02] 2025-10-13 12:47:30,749 | INFO     | process IDs to be killed: [2934143] (in reverse order)
[2025-10-13 08:48:02] 2025-10-13 12:47:30,802 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:48:02] 2025-10-13 12:47:30,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:48:02] 2025-10-13 12:47:30,810 | INFO     | did not find any defunct processes belonging to 2934143
[2025-10-13 08:48:02] 2025-10-13 12:47:30,815 | INFO     | did not find any defunct processes belonging to 2934143
[2025-10-13 08:48:02] 2025-10-13 12:47:30,816 | INFO     | ready for new job
[2025-10-13 08:48:02] 2025-10-13 12:47:30,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:48:02] 2025-10-13 12:47:30,817 | INFO     | ***************************************
[2025-10-13 08:48:02] 2025-10-13 12:47:30,817 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:48:02] 2025-10-13 12:47:30,817 | INFO     | ***************************************
[2025-10-13 08:48:02] 2025-10-13 12:47:30,817 | INFO     | 
[2025-10-13 08:48:02] 2025-10-13 12:47:30,830 | INFO     | architecture information:
[2025-10-13 08:48:02] 2025-10-13 12:47:30,830 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:48:02] 2025-10-13 12:47:30,841 | INFO     | cat /etc/os-release:
[2025-10-13 08:48:02] NAME="CentOS Linux"
[2025-10-13 08:48:02] VERSION="7 (Core)"
[2025-10-13 08:48:02] ID="centos"
[2025-10-13 08:48:02] ID_LIKE="rhel fedora"
[2025-10-13 08:48:02] VERSION_ID="7"
[2025-10-13 08:48:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:48:02] ANSI_COLOR="0;31"
[2025-10-13 08:48:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:48:02] HOME_URL="https://www.centos.org/"
[2025-10-13 08:48:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:48:02] 
[2025-10-13 08:48:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:48:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:48:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:48:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:48:02] 
[2025-10-13 08:48:02] 2025-10-13 12:47:30,841 | INFO     | ***************************************
[2025-10-13 08:48:02] 2025-10-13 12:47:31,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 08:48:02] 2025-10-13 12:47:31,357 | INFO     | sufficient remaining disk space (105338896384 B)
[2025-10-13 08:48:02] 2025-10-13 12:47:31,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:48:02] 2025-10-13 12:47:31,357 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:48:02] 2025-10-13 12:47:31,357 | INFO     | update_server=False
[2025-10-13 08:48:02] 2025-10-13 12:47:31,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:48:02] 2025-10-13 12:47:31,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:48:02] 2025-10-13 12:47:31,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:48:02] 2025-10-13 12:47:31,677 | INFO     | all job control threads have been joined
[2025-10-13 08:48:02] 2025-10-13 12:47:31,820 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 08:48:02] 2025-10-13 12:47:31,820 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 08:48:02] 2025-10-13 12:47:31,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:48:02] 2025-10-13 12:47:31,820 | INFO     | will abort loop
[2025-10-13 08:48:02] 2025-10-13 12:47:31,938 | INFO     | all payload control threads have been joined
[2025-10-13 08:48:02] 2025-10-13 12:47:32,363 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,373 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,453 | INFO     | all data control threads have been joined
[2025-10-13 08:48:02] 2025-10-13 12:47:32,620 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,682 | INFO     | [job] control thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,800 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,820 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,876 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:32,942 | INFO     | [payload] control thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:33,288 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:33,363 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:33,372 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:33,458 | INFO     | [data] control thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:33,680 | INFO     | [job] validate thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:34,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:48:02] 2025-10-13 12:47:35,153 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:35,434 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:40,939 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:48:02] 2025-10-13 12:47:41,584 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:48:02] 2025-10-13 12:47:42,589 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:48:02] 2025-10-13 12:47:44,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820360505152)>', '<ExcThread(monitor, started 139819699136256)>']
[2025-10-13 08:48:02] 2025-10-13 12:47:49,103 | INFO     | all workflow threads have been joined
[2025-10-13 08:48:02] 2025-10-13 12:47:49,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:48:02] 2025-10-13 12:47:49,104 | INFO     | traces error code: 0
[2025-10-13 08:48:02] 2025-10-13 12:47:49,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:48:02] 2025-10-13 12:48:02,142 | INFO     | PID=2918089 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:48:02] 2025-10-13 12:48:02,142 | INFO     | .. there are 2 such processes running
[2025-10-13 08:48:02] 2025-10-13 12:48:02,143 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:48:02] 2025-10-13 12:48:02,143 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:48:02] 2025-10-13 12:48:02,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:48:02] 2025-10-13 12:48:02,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:48:02] 2025-10-13 12:48:02,143 | INFO     | [monitor] control thread has ended
[2025-10-13 08:48:02] 2025-10-13 12:48:02,209 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:48:02] 2025-10-13 12:48:02,212 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:48:02] 2025-10-13 12:48:02,214 [wrapper] pilotpid: 2918089
[2025-10-13 08:48:02] 2025-10-13 12:48:02,216 [wrapper] Pilot exit status: 0
[2025-10-13 08:48:02] 2025-10-13 12:48:02,223 [wrapper] pandaids: 6842731834
[2025-10-13 08:48:02] 2025-10-13 12:48:02,259 [wrapper] cleanup supervisor_pilot  929327 2918091
[2025-10-13 08:48:02] 2025-10-13 12:48:02,261 [wrapper] Test setup, not cleaning
[2025-10-13 08:48:02] 2025-10-13 12:48:02,263 [wrapper] apfmon messages muted
[2025-10-13 08:48:02] 2025-10-13 12:48:02,265 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:48:02] 2025-10-13 12:48:02,267 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:48:02]  *** Error codes and diagnostics ***
[2025-10-13 08:48:02]     "exeErrorCode": 0,
[2025-10-13 08:48:02]     "exeErrorDiag": "",
[2025-10-13 08:48:02]     "pilotErrorCode": 0,
[2025-10-13 08:48:02]     "pilotErrorDiag": "",
[2025-10-13 08:48:02]  *** Listing of results directory ***
[2025-10-13 08:48:02] total 411440
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 04:22 pilot3.tar.gz
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 04:31 queuedata.json
[2025-10-13 08:48:02] -rwx------ 1 boincer umatlas     36292 Oct 13 04:35 runpilot2-wrapper.sh
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas       100 Oct 13 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:48:02] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 07:08 run_atlas
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas       105 Oct 13 07:08 job.xml
[2025-10-13 08:48:02] -rw-r--r-- 2 boincer umatlas 220383197 Oct 13 07:08 EVNT.46676267._002648.pool.root.1
[2025-10-13 08:48:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 07:08 start_atlas.sh
[2025-10-13 08:48:02] drwxrwx--x 2 boincer umatlas      4096 Oct 13 07:08 shared
[2025-10-13 08:48:02] -rw-r--r-- 2 boincer umatlas    569685 Oct 13 07:08 input.tar.gz
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas         0 Oct 13 07:08 boinc_lockfile
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 07:08 pandaJob.out
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas    972497 Oct 13 07:08 agis_schedconf.cvmfs.json
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas   1560580 Oct 13 07:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:48:02] drwx------ 5 boincer umatlas      4096 Oct 13 07:08 pilot3
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas      6013 Oct 13 08:45 init_data.xml
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas 194590007 Oct 13 08:46 HITS.46676269._096510.pool.root.1
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas       529 Oct 13 08:46 boinc_task_state.xml
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas      1050 Oct 13 08:47 memory_monitor_summary.json
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas    351540 Oct 13 08:47 log.46676269._096510.job.log.tgz.1
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas      7827 Oct 13 08:47 heartbeat.json
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 08:48 boinc_mmap_file
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas        27 Oct 13 08:48 wrapper_checkpoint.txt
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas       822 Oct 13 08:48 pilotlog.txt
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas        95 Oct 13 08:48 pilot_heartbeat.json
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas    868564 Oct 13 08:48 log.46676269._096510.job.log.1
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas       357 Oct 13 08:48 output.list
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas       620 Oct 13 08:48 runtime_log
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas   1239040 Oct 13 08:48 result.tar.gz
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas      8698 Oct 13 08:48 runtime_log.err
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas       656 Oct 13 08:48 LoYLDmOCTS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfjmNDmkAUc1m.diag
[2025-10-13 08:48:02] -rw-r--r-- 1 boincer umatlas     22512 Oct 13 08:48 stderr.txt
[2025-10-13 08:48:02] HITS file was successfully produced:
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas 194590007 Oct 13 08:46 shared/HITS.pool.root.1
[2025-10-13 08:48:02]  *** Contents of shared directory: ***
[2025-10-13 08:48:02] total 407048
[2025-10-13 08:48:02] -rw-r--r-- 2 boincer umatlas 220383197 Oct 13 07:08 ATLAS.root_0
[2025-10-13 08:48:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 07:08 start_atlas.sh
[2025-10-13 08:48:02] -rw-r--r-- 2 boincer umatlas    569685 Oct 13 07:08 input.tar.gz
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas 194590007 Oct 13 08:46 HITS.pool.root.1
[2025-10-13 08:48:02] -rw------- 1 boincer umatlas   1239040 Oct 13 08:48 result.tar.gz
08:48:04 (2911120): run_atlas exited; CPU time 43948.257989
08:48:04 (2911120): called boinc_finish(0)

</stderr_txt>
]]>

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