Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:10:35 (203935): wrapper (7.7.26015): starting
07:10:35 (203935): wrapper: running run_atlas (--nthreads 10)
[2025-10-13 07:10:35] Arguments: --nthreads 10
[2025-10-13 07:10:35] Threads: 10
[2025-10-13 07:10:35] Checking for CVMFS
[2025-10-13 07:10:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:10:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:10:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:10:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:10:37] 2.13.2.0 79137 136265 576504 151659 3 19 34323133 40960000 45642 16776704 0 478235849 99.818 225638702 32277 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 07:10:37] CVMFS is ok
[2025-10-13 07:10:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:10:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:10:37] Further information can be found at the LHC@home message board.
[2025-10-13 07:10:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:10:37] Checking for apptainer binary...
[2025-10-13 07:10:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:10:37] Running /usr/bin/apptainer --version
[2025-10-13 07:10:37] apptainer version 1.4.3-1.el9
[2025-10-13 07:10:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:10:37] c8-7-6.aglt2.org
[2025-10-13 07:10:37] apptainer works
[2025-10-13 07:10:38] Set ATHENA_PROC_NUMBER=10
[2025-10-13 07:10:38] Set ATHENA_CORE_NUMBER=10
[2025-10-13 07:10:38] Starting ATLAS job with PandaID=6842828292
[2025-10-13 07:10:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:14:27]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:14:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/37/log.46676269._096695.job.log.tgz.1
[2025-10-13 08:14:27]  workdir=None
[2025-10-13 08:14:27] ]
[2025-10-13 08:14:27] 2025-10-13 12:13:43,463 | INFO     | transferring file log.46676269._096695.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6842828292/log.46676269._096695.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 08:14:27] 2025-10-13 12:13:43,464 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6842828292/log.46676269._096695.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._096695.job
[2025-10-13 08:14:27] 2025-10-13 12:13:43,485 | INFO     | adding to output.list: log.46676269._096695.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/37/log.46676269._096695.job.log.tg
[2025-10-13 08:14:27] 2025-10-13 12:13:43,486 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:14:27] 2025-10-13 12:13:43,486 | INFO     | summary of transferred files:
[2025-10-13 08:14:27] 2025-10-13 12:13:43,486 | INFO     |  -- lfn=log.46676269._096695.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:14:27] 2025-10-13 12:13:43,486 | INFO     | stage-out finished correctly
[2025-10-13 08:14:27] 2025-10-13 12:13:43,642 | INFO     | PID=209302 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 08:14:27] 2025-10-13 12:13:43,643 | INFO     | .. there are 48 such processes running
[2025-10-13 08:14:27] 2025-10-13 12:13:44,643 | INFO     | time since job start (3701s) is within the limit (172800.0s)
[2025-10-13 08:14:27] 2025-10-13 12:13:45,464 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:14:27] 2025-10-13 12:13:46,149 | WARNING  | process 221966 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 08:14:27] 2025-10-13 12:13:46,149 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6842828292/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:14:27] 2025-10-13 12:13:46,574 | INFO     | number of running child processes to parent process 221966: 1
[2025-10-13 08:14:27] 2025-10-13 12:13:46,574 | INFO     | maximum number of monitored processes: 7
[2025-10-13 08:14:27] 2025-10-13 12:13:46,648 | INFO     | time since job start (3703s) is within the limit (172800.0s)
[2025-10-13 08:14:27] 2025-10-13 12:13:47,214 | INFO     | job 6842828292 has state=finished
[2025-10-13 08:14:27] 2025-10-13 12:13:47,214 | INFO     | preparing for final server update for job 6842828292 in state='finished'
[2025-10-13 08:14:27] 2025-10-13 12:13:47,214 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:14:27] 2025-10-13 12:13:47,215 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:14:27] 2025-10-13 12:13:47,215 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:14:27] 2025-10-13 12:13:47,215 | INFO     | job 6842828292 has finished - writing final server update
[2025-10-13 08:14:27] 2025-10-13 12:13:47,215 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:14:27] 2025-10-13 12:13:47,216 | INFO     | executing command: lscpu
[2025-10-13 08:14:27] 2025-10-13 12:13:47,283 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:14:27] 2025-10-13 12:13:48,654 | INFO     | time since job start (3705s) is within the limit (172800.0s)
[2025-10-13 08:14:27] 2025-10-13 12:13:49,076 | INFO     | monitor loop #268: job 0:6842828292 is in state 'finished'
[2025-10-13 08:14:27] 2025-10-13 12:13:49,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:14:27] 2025-10-13 12:13:50,663 | INFO     | time since job start (3707s) is within the limit (172800.0s)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,580 | INFO     | monitor loop #269: job 0:6842828292 is in state 'finished'
[2025-10-13 08:14:27] 2025-10-13 12:13:51,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,679 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 08:14:27] 2025-10-13 12:13:51,683 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.3390546875007
[2025-10-13 08:14:27] 2025-10-13 12:13:51,694 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6842828292/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,695 | INFO     | extracted standard info from prmon json
[2025-10-13 08:14:27] 2025-10-13 12:13:51,695 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:14:27] 2025-10-13 12:13:51,695 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:14:27] 2025-10-13 12:13:51,696 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:14:27] 2025-10-13 12:13:51,696 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | sum of square deviations: 41117416.98039215
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | sum of deviations: 8660262262.313725
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | mean x: 1760355924.0196078
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | mean y: 2520819.68627451
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | -- intersect: -370768434571.24786
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | intersect: -370768434571.24786
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | chi2: 0.7102133697395601
[2025-10-13 08:14:27] 2025-10-13 12:13:51,697 | INFO     | -- intersect: -370768434571.24786
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | current memory leak: 210.62 B/s (using 51 data points, chi2=0.71)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | could have reported an average CPU frequency of 3769 MHz (6 samples)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | ..............................
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . Timing measurements:
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . get job = 0 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . initial setup = 8 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . payload setup = 62 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . stage-in = 0 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . payload execution = 3556 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . stage-out = 0 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | . log creation = 0 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,698 | INFO     | ..............................
[2025-10-13 08:14:27] 2025-10-13 12:13:51,754 | INFO     | 
[2025-10-13 08:14:27] 2025-10-13 12:13:51,754 | INFO     | job summary report
[2025-10-13 08:14:27] 2025-10-13 12:13:51,754 | INFO     | --------------------------------------------------
[2025-10-13 08:14:27] 2025-10-13 12:13:51,754 | INFO     | PanDA job id: 6842828292
[2025-10-13 08:14:27] 2025-10-13 12:13:51,754 | INFO     | task id: 46676269
[2025-10-13 08:14:27] 2025-10-13 12:13:51,754 | INFO     | errors: (none)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | pilot state: finished 
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | transexitcode: 0
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | exeerrorcode: 0
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | exeerrordiag: 
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | exitcode: 0
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | exitmsg: OK
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | cpuconsumptiontime: 21862 s
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | nevents: 400
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | neventsw: 0
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | pid: 221966
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | pgrp: 221966
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | corecount: 10
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | event service: False
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | sizes: {0: 2348529, 1: 2348784, 12: 2348784, 23: 2348812, 34: 2348840, 36: 2349130, 44: 2349286, 3622: 2375017, 3623: 2375016, 3624: 2384070, 3626: 2384126, 3632: 
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | --------------------------------------------------
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | 
[2025-10-13 08:14:27] 2025-10-13 12:13:51,755 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | job 6842828292 has completed (purged errors)
[2025-10-13 08:14:27] 2025-10-13 12:13:51,776 | INFO     | overall cleanup function is called
[2025-10-13 08:14:27] 2025-10-13 12:13:52,784 | INFO     | --- collectZombieJob: --- 10, [221966]
[2025-10-13 08:14:27] 2025-10-13 12:13:52,784 | INFO     | zombie collector waiting for pid 221966
[2025-10-13 08:14:27] 2025-10-13 12:13:52,784 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:14:27] 2025-10-13 12:13:52,784 | INFO     | collected zombie processes
[2025-10-13 08:14:27] 2025-10-13 12:13:52,784 | INFO     | will attempt to kill all subprocesses of pid=221966
[2025-10-13 08:14:27] 2025-10-13 12:13:53,222 | INFO     | process IDs to be killed: [221966] (in reverse order)
[2025-10-13 08:14:27] 2025-10-13 12:13:53,417 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:14:27] 2025-10-13 12:13:53,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:14:27] 2025-10-13 12:13:53,448 | INFO     | did not find any defunct processes belonging to 221966
[2025-10-13 08:14:27] 2025-10-13 12:13:53,475 | INFO     | did not find any defunct processes belonging to 221966
[2025-10-13 08:14:27] 2025-10-13 12:13:53,476 | INFO     | ready for new job
[2025-10-13 08:14:27] 2025-10-13 12:13:53,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:14:27] 2025-10-13 12:13:53,478 | INFO     | ***************************************
[2025-10-13 08:14:27] 2025-10-13 12:13:53,481 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:14:27] 2025-10-13 12:13:53,481 | INFO     | ***************************************
[2025-10-13 08:14:27] 2025-10-13 12:13:53,481 | INFO     | 
[2025-10-13 08:14:27] 2025-10-13 12:13:53,499 | INFO     | architecture information:
[2025-10-13 08:14:27] 2025-10-13 12:13:53,499 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:14:27] 2025-10-13 12:13:53,513 | INFO     | cat /etc/os-release:
[2025-10-13 08:14:27] NAME="CentOS Linux"
[2025-10-13 08:14:27] VERSION="7 (Core)"
[2025-10-13 08:14:27] ID="centos"
[2025-10-13 08:14:27] ID_LIKE="rhel fedora"
[2025-10-13 08:14:27] VERSION_ID="7"
[2025-10-13 08:14:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:14:27] ANSI_COLOR="0;31"
[2025-10-13 08:14:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:14:27] HOME_URL="https://www.centos.org/"
[2025-10-13 08:14:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:14:27] 
[2025-10-13 08:14:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:14:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:14:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:14:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:14:27] 
[2025-10-13 08:14:27] 2025-10-13 12:13:53,514 | INFO     | ***************************************
[2025-10-13 08:14:27] 2025-10-13 12:13:54,017 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 08:14:27] 2025-10-13 12:13:54,036 | INFO     | sufficient remaining disk space (173248872448 B)
[2025-10-13 08:14:27] 2025-10-13 12:13:54,037 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:14:27] 2025-10-13 12:13:54,037 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:14:27] 2025-10-13 12:13:54,037 | INFO     | update_server=False
[2025-10-13 08:14:27] 2025-10-13 12:13:54,037 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:14:27] 2025-10-13 12:13:54,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:14:27] 2025-10-13 12:13:54,084 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 08:14:27] 2025-10-13 12:13:54,084 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 08:14:27] 2025-10-13 12:13:54,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:14:27] 2025-10-13 12:13:54,084 | INFO     | will abort loop
[2025-10-13 08:14:27] 2025-10-13 12:13:54,106 | INFO     | all payload control threads have been joined
[2025-10-13 08:14:27] 2025-10-13 12:13:54,277 | INFO     | all job control threads have been joined
[2025-10-13 08:14:27] 2025-10-13 12:13:54,405 | INFO     | all data control threads have been joined
[2025-10-13 08:14:27] 2025-10-13 12:13:55,045 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,089 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,111 | INFO     | [payload] control thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,229 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,283 | INFO     | [job] control thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,343 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,409 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,410 | INFO     | [data] control thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:55,987 | INFO     | [job] validate thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:56,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:14:27] 2025-10-13 12:13:56,058 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:56,065 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:56,473 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:56,492 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:13:56,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:14:27] 2025-10-13 12:13:57,771 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:14:00,030 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:14:27] 2025-10-13 12:14:10,313 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:14:27] 2025-10-13 12:14:12,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459675137856)>', '<ExcThread(monitor, started 140459011712768)>']
[2025-10-13 08:14:27] 2025-10-13 12:14:17,569 | INFO     | all workflow threads have been joined
[2025-10-13 08:14:27] 2025-10-13 12:14:17,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:14:27] 2025-10-13 12:14:17,570 | INFO     | traces error code: 0
[2025-10-13 08:14:27] 2025-10-13 12:14:17,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:14:27] 2025-10-13 12:14:24,169 | INFO     | PID=209302 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 08:14:27] 2025-10-13 12:14:24,179 | INFO     | .. there are 48 such processes running
[2025-10-13 08:14:27] 2025-10-13 12:14:24,179 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:14:27] 2025-10-13 12:14:24,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:14:27] 2025-10-13 12:14:24,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:14:27] 2025-10-13 12:14:24,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:14:27] 2025-10-13 12:14:24,179 | INFO     | [monitor] control thread has ended
[2025-10-13 08:14:27] 2025-10-13 12:14:26,658 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:14:27] 2025-10-13 12:14:26,661 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:14:27] 2025-10-13 12:14:26,663 [wrapper] pilotpid: 209302
[2025-10-13 08:14:27] 2025-10-13 12:14:26,664 [wrapper] Pilot exit status: 0
[2025-10-13 08:14:27] 2025-10-13 12:14:26,710 [wrapper] pandaids: 6842828292
[2025-10-13 08:14:27] 2025-10-13 12:14:27,228 [wrapper] cleanup supervisor_pilot  578532 209303
[2025-10-13 08:14:27] 2025-10-13 12:14:27,230 [wrapper] Test setup, not cleaning
[2025-10-13 08:14:27] 2025-10-13 12:14:27,231 [wrapper] apfmon messages muted
[2025-10-13 08:14:27] 2025-10-13 12:14:27,233 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:14:27] 2025-10-13 12:14:27,234 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:14:27]  *** Error codes and diagnostics ***
[2025-10-13 08:14:27]     "exeErrorCode": 0,
[2025-10-13 08:14:27]     "exeErrorDiag": "",
[2025-10-13 08:14:27]     "pilotErrorCode": 0,
[2025-10-13 08:14:27]     "pilotErrorDiag": "",
[2025-10-13 08:14:27]  *** Listing of results directory ***
[2025-10-13 08:14:27] total 401268
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas    557409 Oct 13 06:40 pilot3.tar.gz
[2025-10-13 08:14:27] -rwx------. 1 boincer umatlas     36292 Oct 13 06:49 runpilot2-wrapper.sh
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas      5112 Oct 13 06:49 queuedata.json
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas       100 Oct 13 07:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:14:27] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 07:10 run_atlas
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas       105 Oct 13 07:10 job.xml
[2025-10-13 08:14:27] -rw-r--r--. 2 boincer umatlas 220023227 Oct 13 07:10 EVNT.46676267._004659.pool.root.1
[2025-10-13 08:14:27] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 07:10 shared
[2025-10-13 08:14:27] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 07:10 input.tar.gz
[2025-10-13 08:14:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 07:10 start_atlas.sh
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas         0 Oct 13 07:10 boinc_lockfile
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 07:10 pandaJob.out
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas    972497 Oct 13 07:11 agis_schedconf.cvmfs.json
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas   1560580 Oct 13 07:11 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:14:27] drwx------. 5 boincer umatlas      4096 Oct 13 07:12 pilot3
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas       529 Oct 13 08:13 boinc_task_state.xml
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas 185277834 Oct 13 08:13 HITS.46676269._096695.pool.root.1
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas      7161 Oct 13 08:13 init_data.xml
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas      1032 Oct 13 08:13 memory_monitor_summary.json
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas    329005 Oct 13 08:13 log.46676269._096695.job.log.tgz.1
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas      7772 Oct 13 08:13 heartbeat.json
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas       822 Oct 13 08:14 pilotlog.txt
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas        95 Oct 13 08:14 pilot_heartbeat.json
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 08:14 boinc_mmap_file
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas        27 Oct 13 08:14 wrapper_checkpoint.txt
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas    524270 Oct 13 08:14 log.46676269._096695.job.log.1
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas       357 Oct 13 08:14 output.list
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas       620 Oct 13 08:14 runtime_log
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas    870400 Oct 13 08:14 result.tar.gz
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas      8695 Oct 13 08:14 runtime_log.err
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas       651 Oct 13 08:14 boFLDm0IVS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQlmNDmuHi7an.diag
[2025-10-13 08:14:27] -rw-r--r--. 1 boincer umatlas     22437 Oct 13 08:14 stderr.txt
[2025-10-13 08:14:27] HITS file was successfully produced:
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas 185277834 Oct 13 08:13 shared/HITS.pool.root.1
[2025-10-13 08:14:27]  *** Contents of shared directory: ***
[2025-10-13 08:14:27] total 397236
[2025-10-13 08:14:27] -rw-r--r--. 2 boincer umatlas 220023227 Oct 13 07:10 ATLAS.root_0
[2025-10-13 08:14:27] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 07:10 input.tar.gz
[2025-10-13 08:14:27] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 07:10 start_atlas.sh
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas 185277834 Oct 13 08:13 HITS.pool.root.1
[2025-10-13 08:14:27] -rw-------. 1 boincer umatlas    870400 Oct 13 08:14 result.tar.gz
08:14:29 (203935): run_atlas exited; CPU time 21975.623447
08:14:29 (203935): called boinc_finish(0)

</stderr_txt>
]]>

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