Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:50:35 (25198): wrapper (7.7.26015): starting
06:50:35 (25198): wrapper: running run_atlas (--nthreads 11)
[2025-10-13 06:50:35] Arguments: --nthreads 11
[2025-10-13 06:50:35] Threads: 11
[2025-10-13 06:50:35] Checking for CVMFS
[2025-10-13 06:50:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:50:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:50:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:50:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:50:38] 2.13.2.0 79137 136245 600352 151658 3 905 33744911 40960001 40289 16776704 0 478041114 99.819 225386808 32285 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 06:50:38] CVMFS is ok
[2025-10-13 06:50:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:50:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:50:38] Further information can be found at the LHC@home message board.
[2025-10-13 06:50:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:50:38] Checking for apptainer binary...
[2025-10-13 06:50:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:50:38] Running /usr/bin/apptainer --version
[2025-10-13 06:50:38] apptainer version 1.4.3-1.el9
[2025-10-13 06:50:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:50:38] c8-7-6.aglt2.org
[2025-10-13 06:50:38] apptainer works
[2025-10-13 06:50:39] Set ATHENA_PROC_NUMBER=11
[2025-10-13 06:50:39] Set ATHENA_CORE_NUMBER=11
[2025-10-13 06:50:39] Starting ATLAS job with PandaID=6842828291
[2025-10-13 06:50:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:02:24]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:02:24] 2025-10-13 12:01:31,399 | INFO     | preparing for final server update for job 6842828291 in state='finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:31,399 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:02:24] 2025-10-13 12:01:31,400 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:02:24] 2025-10-13 12:01:31,400 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:02:24] 2025-10-13 12:01:31,400 | INFO     | job 6842828291 has finished - writing final server update
[2025-10-13 08:02:24] 2025-10-13 12:01:31,400 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:02:24] 2025-10-13 12:01:31,402 | INFO     | executing command: lscpu
[2025-10-13 08:02:24] 2025-10-13 12:01:31,524 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:02:24] 2025-10-13 12:01:31,828 | INFO     | time since job start (4105s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:33,157 | INFO     | monitor loop #279: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:33,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:33,835 | INFO     | time since job start (4107s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:33,835 | INFO     | 4117s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 08:02:24] 2025-10-13 12:01:35,661 | INFO     | monitor loop #280: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:35,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:35,842 | INFO     | time since job start (4109s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:37,849 | INFO     | time since job start (4111s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:38,166 | INFO     | monitor loop #281: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:38,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:39,858 | INFO     | time since job start (4113s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:40,671 | INFO     | monitor loop #282: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:40,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:41,872 | INFO     | time since job start (4115s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:43,176 | INFO     | monitor loop #283: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:43,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:43,883 | INFO     | time since job start (4117s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:45,681 | INFO     | monitor loop #284: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:45,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:45,893 | INFO     | time since job start (4119s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:47,901 | INFO     | time since job start (4121s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:48,192 | INFO     | monitor loop #285: job 0:6842828291 is in state 'finished'
[2025-10-13 08:02:24] 2025-10-13 12:01:48,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:02:24] 2025-10-13 12:01:49,482 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 08:02:24] 2025-10-13 12:01:49,518 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3762.53984375
[2025-10-13 08:02:24] 2025-10-13 12:01:49,575 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6842828291/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:02:24] 2025-10-13 12:01:49,576 | INFO     | extracted standard info from prmon json
[2025-10-13 08:02:24] 2025-10-13 12:01:49,576 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:02:24] 2025-10-13 12:01:49,576 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:02:24] 2025-10-13 12:01:49,576 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:02:24] 2025-10-13 12:01:49,576 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | sum of square deviations: 60482994.5
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | sum of deviations: 8958024460.0
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | mean x: 1760355014.5
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | mean y: 2544124.9310344825
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | -- intersect: -260720381526.0907
[2025-10-13 08:02:24] 2025-10-13 12:01:49,577 | INFO     | intersect: -260720381526.0907
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | chi2: 0.4891704146703812
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | -- intersect: -260720381526.0907
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | current memory leak: 148.11 B/s (using 58 data points, chi2=0.49)
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | could have reported an average CPU frequency of 3772 MHz (6 samples)
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | ..............................
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . Timing measurements:
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . get job = 0 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . initial setup = 10 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . payload setup = 51 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . stage-in = 0 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . payload execution = 3944 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . stage-out = 1 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | . log creation = 0 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,578 | INFO     | ..............................
[2025-10-13 08:02:24] 2025-10-13 12:01:49,913 | INFO     | time since job start (4123s) is within the limit (172800.0s)
[2025-10-13 08:02:24] 2025-10-13 12:01:49,977 | INFO     | 
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | job summary report
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | --------------------------------------------------
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | PanDA job id: 6842828291
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | task id: 46676269
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | errors: (none)
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | pilot state: finished 
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | transexitcode: 0
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | exeerrorcode: 0
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | exeerrordiag: 
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | exitcode: 0
[2025-10-13 08:02:24] 2025-10-13 12:01:49,986 | INFO     | exitmsg: OK
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | cpuconsumptiontime: 24311 s
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | nevents: 400
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | neventsw: 0
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | pid: 136447
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | pgrp: 136447
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | corecount: 11
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | event service: False
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | sizes: {0: 2348585, 1: 2348784, 2: 2348812, 13: 2348812, 23: 2348868, 34: 2348896, 45: 2349052, 56: 2349080, 61: 2349370, 66: 2349398, 4000: 2375576, 4001: 2384574
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | --------------------------------------------------
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | 
[2025-10-13 08:02:24] 2025-10-13 12:01:49,987 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | job 6842828291 has completed (purged errors)
[2025-10-13 08:02:24] 2025-10-13 12:01:50,035 | INFO     | overall cleanup function is called
[2025-10-13 08:02:24] 2025-10-13 12:01:51,044 | INFO     | --- collectZombieJob: --- 10, [136447]
[2025-10-13 08:02:24] 2025-10-13 12:01:51,044 | INFO     | zombie collector waiting for pid 136447
[2025-10-13 08:02:24] 2025-10-13 12:01:51,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:02:24] 2025-10-13 12:01:51,044 | INFO     | collected zombie processes
[2025-10-13 08:02:24] 2025-10-13 12:01:51,044 | INFO     | will attempt to kill all subprocesses of pid=136447
[2025-10-13 08:02:24] 2025-10-13 12:01:52,010 | INFO     | process IDs to be killed: [136447] (in reverse order)
[2025-10-13 08:02:24] 2025-10-13 12:01:52,264 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:02:24] 2025-10-13 12:01:52,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:02:24] 2025-10-13 12:01:52,303 | INFO     | did not find any defunct processes belonging to 136447
[2025-10-13 08:02:24] 2025-10-13 12:01:52,365 | INFO     | did not find any defunct processes belonging to 136447
[2025-10-13 08:02:24] 2025-10-13 12:01:52,365 | INFO     | ready for new job
[2025-10-13 08:02:24] 2025-10-13 12:01:52,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:02:24] 2025-10-13 12:01:52,366 | INFO     | ***************************************
[2025-10-13 08:02:24] 2025-10-13 12:01:52,366 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:02:24] 2025-10-13 12:01:52,366 | INFO     | ***************************************
[2025-10-13 08:02:24] 2025-10-13 12:01:52,366 | INFO     | 
[2025-10-13 08:02:24] 2025-10-13 12:01:52,396 | INFO     | architecture information:
[2025-10-13 08:02:24] 2025-10-13 12:01:52,400 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:02:24] 2025-10-13 12:01:52,453 | INFO     | cat /etc/os-release:
[2025-10-13 08:02:24] NAME="CentOS Linux"
[2025-10-13 08:02:24] VERSION="7 (Core)"
[2025-10-13 08:02:24] ID="centos"
[2025-10-13 08:02:24] ID_LIKE="rhel fedora"
[2025-10-13 08:02:24] VERSION_ID="7"
[2025-10-13 08:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:02:24] ANSI_COLOR="0;31"
[2025-10-13 08:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:02:24] HOME_URL="https://www.centos.org/"
[2025-10-13 08:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:02:24] 
[2025-10-13 08:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:02:24] 
[2025-10-13 08:02:24] 2025-10-13 12:01:52,453 | INFO     | ***************************************
[2025-10-13 08:02:24] 2025-10-13 12:01:52,957 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-13 08:02:24] 2025-10-13 12:01:53,021 | INFO     | sufficient remaining disk space (172653281280 B)
[2025-10-13 08:02:24] 2025-10-13 12:01:53,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:02:24] 2025-10-13 12:01:53,022 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:02:24] 2025-10-13 12:01:53,022 | INFO     | update_server=False
[2025-10-13 08:02:24] 2025-10-13 12:01:53,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:02:24] 2025-10-13 12:01:53,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:02:24] 2025-10-13 12:01:53,112 | INFO     | all job control threads have been joined
[2025-10-13 08:02:24] 2025-10-13 12:01:53,203 | INFO     | all data control threads have been joined
[2025-10-13 08:02:24] 2025-10-13 12:01:53,214 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 08:02:24] 2025-10-13 12:01:53,214 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 08:02:24] 2025-10-13 12:01:53,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:02:24] 2025-10-13 12:01:53,214 | INFO     | will abort loop
[2025-10-13 08:02:24] 2025-10-13 12:01:54,026 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,118 | INFO     | [job] control thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,172 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,219 | INFO     | [data] control thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,220 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,503 | INFO     | all payload control threads have been joined
[2025-10-13 08:02:24] 2025-10-13 12:01:54,547 | INFO     | [job] validate thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:02:24] 2025-10-13 12:01:54,756 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,779 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:54,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:02:24] 2025-10-13 12:01:55,040 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:55,252 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:55,300 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:55,307 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:55,508 | INFO     | [payload] control thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:55,743 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:01:58,979 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:02:03,407 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:02:24] 2025-10-13 12:02:04,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:02:24] 2025-10-13 12:02:12,875 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:02:24] 2025-10-13 12:02:14,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072573876032)>', '<ExcThread(monitor, started 140071541917440)>']
[2025-10-13 08:02:24] 2025-10-13 12:02:19,145 | INFO     | all workflow threads have been joined
[2025-10-13 08:02:24] 2025-10-13 12:02:19,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:02:24] 2025-10-13 12:02:19,145 | INFO     | traces error code: 0
[2025-10-13 08:02:24] 2025-10-13 12:02:19,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:02:24] 2025-10-13 12:02:24,037 | INFO     | PID=102800 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 08:02:24] 2025-10-13 12:02:24,038 | INFO     | .. there are 53 such processes running
[2025-10-13 08:02:24] 2025-10-13 12:02:24,039 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:02:24] 2025-10-13 12:02:24,039 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:02:24] 2025-10-13 12:02:24,039 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:02:24] 2025-10-13 12:02:24,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:02:24] 2025-10-13 12:02:24,039 | INFO     | [monitor] control thread has ended
[2025-10-13 08:02:24] 2025-10-13 12:02:24,170 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:02:24] 2025-10-13 12:02:24,185 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:02:24] 2025-10-13 12:02:24,202 [wrapper] pilotpid: 102800
[2025-10-13 08:02:24] 2025-10-13 12:02:24,221 [wrapper] Pilot exit status: 0
[2025-10-13 08:02:24] 2025-10-13 12:02:24,246 [wrapper] pandaids: 6842828291
[2025-10-13 08:02:24] 2025-10-13 12:02:24,531 [wrapper] cleanup supervisor_pilot  498249 102801
[2025-10-13 08:02:24] 2025-10-13 12:02:24,549 [wrapper] Test setup, not cleaning
[2025-10-13 08:02:24] 2025-10-13 12:02:24,568 [wrapper] apfmon messages muted
[2025-10-13 08:02:24] 2025-10-13 12:02:24,583 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:02:24] 2025-10-13 12:02:24,597 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:02:24]  *** Error codes and diagnostics ***
[2025-10-13 08:02:24]     "exeErrorCode": 0,
[2025-10-13 08:02:24]     "exeErrorDiag": "",
[2025-10-13 08:02:24]     "pilotErrorCode": 0,
[2025-10-13 08:02:24]     "pilotErrorDiag": "",
[2025-10-13 08:02:24]  *** Listing of results directory ***
[2025-10-13 08:02:24] total 413492
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas    557409 Oct 13 06:40 pilot3.tar.gz
[2025-10-13 08:02:24] -rwx------. 1 boincer umatlas     36292 Oct 13 06:49 runpilot2-wrapper.sh
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas      5112 Oct 13 06:49 queuedata.json
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas       100 Oct 13 06:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:02:24] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 06:50 run_atlas
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas       105 Oct 13 06:50 job.xml
[2025-10-13 08:02:24] -rw-r--r--. 2 boincer umatlas 220393307 Oct 13 06:50 EVNT.46676267._004479.pool.root.1
[2025-10-13 08:02:24] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 06:50 shared
[2025-10-13 08:02:24] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 06:50 input.tar.gz
[2025-10-13 08:02:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:50 start_atlas.sh
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas         0 Oct 13 06:50 boinc_lockfile
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 06:50 pandaJob.out
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas    972497 Oct 13 06:52 agis_schedconf.cvmfs.json
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas   1560580 Oct 13 06:52 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:02:24] drwx------. 5 boincer umatlas      4096 Oct 13 06:53 pilot3
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas 197243348 Oct 13 08:00 HITS.46676269._096694.pool.root.1
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas       530 Oct 13 08:01 boinc_task_state.xml
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas      7161 Oct 13 08:01 init_data.xml
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas      1046 Oct 13 08:01 memory_monitor_summary.json
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas    373945 Oct 13 08:01 log.46676269._096694.job.log.tgz.1
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas      7811 Oct 13 08:01 heartbeat.json
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 08:02 boinc_mmap_file
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas        27 Oct 13 08:02 wrapper_checkpoint.txt
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas        95 Oct 13 08:02 pilot_heartbeat.json
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas       822 Oct 13 08:02 pilotlog.txt
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas    564601 Oct 13 08:02 log.46676269._096694.job.log.1
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas       357 Oct 13 08:02 output.list
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas       620 Oct 13 08:02 runtime_log
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas    962560 Oct 13 08:02 result.tar.gz
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas      8695 Oct 13 08:02 runtime_log.err
[2025-10-13 08:02:24] -rw-------. 1 boincer umatlas       655 Oct 13 08:02 CUELDm0IVS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPlmNDmhjxzjn.diag
[2025-10-13 08:02:24] -rw-r--r--. 1 boincer umatlas     22222 Oct 13 08:02 stderr.txt
[2025-10-13 08:02:25] HITS file was successfully produced:
[2025-10-13 08:02:25] -rw-------. 1 boincer umatlas 197243348 Oct 13 08:00 shared/HITS.pool.root.1
[2025-10-13 08:02:25]  *** Contents of shared directory: ***
[2025-10-13 08:02:25] total 409376
[2025-10-13 08:02:25] -rw-r--r--. 2 boincer umatlas 220393307 Oct 13 06:50 ATLAS.root_0
[2025-10-13 08:02:25] -rw-r--r--. 2 boincer umatlas    569679 Oct 13 06:50 input.tar.gz
[2025-10-13 08:02:25] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:50 start_atlas.sh
[2025-10-13 08:02:25] -rw-------. 1 boincer umatlas 197243348 Oct 13 08:00 HITS.pool.root.1
[2025-10-13 08:02:25] -rw-------. 1 boincer umatlas    962560 Oct 13 08:02 result.tar.gz
08:02:26 (25198): run_atlas exited; CPU time 24438.039385
08:02:26 (25198): called boinc_finish(0)

</stderr_txt>
]]>

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