Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:20:30 (3705227): wrapper (7.7.26015): starting
07:20:30 (3705227): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 07:20:30] Arguments: --nthreads 8
[2025-10-13 07:20:30] Threads: 8
[2025-10-13 07:20:30] Checking for CVMFS
[2025-10-13 07:20:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:20:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:20:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:20:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:20:31] 2.13.2.0 5242 7026 137604 151660 2 65 23731338 40960000 15030 16776704 0 25220017 99.751 14835916 32566 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 07:20:31] CVMFS is ok
[2025-10-13 07:20:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:20:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:20:31] Further information can be found at the LHC@home message board.
[2025-10-13 07:20:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:20:31] Checking for apptainer binary...
[2025-10-13 07:20:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:20:31] Running /usr/bin/apptainer --version
[2025-10-13 07:20:31] apptainer version 1.4.3-1.el9
[2025-10-13 07:20:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:20:31] c-212-1.aglt2.org
[2025-10-13 07:20:31] apptainer works
[2025-10-13 07:20:31] Set ATHENA_PROC_NUMBER=8
[2025-10-13 07:20:31] Set ATHENA_CORE_NUMBER=8
[2025-10-13 07:20:32] Starting ATLAS job with PandaID=6841070141
[2025-10-13 07:20:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:48:24]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:48:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 08:48:24]  replicas=None
[2025-10-13 08:48:24]  scope=mc23_13p6TeV
[2025-10-13 08:48:24]  status=None
[2025-10-13 08:48:24]  status_code=0
[2025-10-13 08:48:24]  storage_token=
[2025-10-13 08:48:24]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6841070141/log.46676269._093946.job.log.tgz.1
[2025-10-13 08:48:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/63/log.46676269._093946.job.log.tgz.1
[2025-10-13 08:48:24]  workdir=None
[2025-10-13 08:48:24] ]
[2025-10-13 08:48:24] 2025-10-13 12:47:46,443 | INFO     | transferring file log.46676269._093946.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6841070141/log.46676269._093946.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 08:48:24] 2025-10-13 12:47:46,443 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6841070141/log.46676269._093946.job.log.tgz.1 /tmp/boinchome/slots/6/log.46676269._093946.job
[2025-10-13 08:48:24] 2025-10-13 12:47:46,504 | INFO     | adding to output.list: log.46676269._093946.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/63/log.46676269._093946.job.log.tg
[2025-10-13 08:48:24] 2025-10-13 12:47:46,505 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:48:24] 2025-10-13 12:47:46,505 | INFO     | summary of transferred files:
[2025-10-13 08:48:24] 2025-10-13 12:47:46,505 | INFO     |  -- lfn=log.46676269._093946.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:48:24] 2025-10-13 12:47:46,505 | INFO     | stage-out finished correctly
[2025-10-13 08:48:24] 2025-10-13 12:47:46,742 | INFO     | time since job start (5202s) is within the limit (172800.0s)
[2025-10-13 08:48:24] 2025-10-13 12:47:47,189 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:48:24] 2025-10-13 12:47:47,269 | INFO     | job 6841070141 has state=finished
[2025-10-13 08:48:24] 2025-10-13 12:47:47,276 | INFO     | preparing for final server update for job 6841070141 in state='finished'
[2025-10-13 08:48:24] 2025-10-13 12:47:47,277 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:48:24] 2025-10-13 12:47:47,277 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:48:24] 2025-10-13 12:47:47,277 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:48:24] 2025-10-13 12:47:47,277 | INFO     | job 6841070141 has finished - writing final server update
[2025-10-13 08:48:24] 2025-10-13 12:47:47,277 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:48:24] 2025-10-13 12:47:47,278 | INFO     | executing command: lscpu
[2025-10-13 08:48:24] 2025-10-13 12:47:47,351 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:48:24] 2025-10-13 12:47:48,748 | INFO     | time since job start (5204s) is within the limit (172800.0s)
[2025-10-13 08:48:24] 2025-10-13 12:47:50,756 | INFO     | time since job start (5206s) is within the limit (172800.0s)
[2025-10-13 08:48:24] 2025-10-13 12:47:51,148 | WARNING  | process 3715714 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 08:48:24] 2025-10-13 12:47:51,148 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6841070141/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:48:24] 2025-10-13 12:47:51,534 | INFO     | number of running child processes to parent process 3715714: 1
[2025-10-13 08:48:24] 2025-10-13 12:47:51,535 | INFO     | maximum number of monitored processes: 6
[2025-10-13 08:48:24] 2025-10-13 12:47:52,444 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 08:48:24] 2025-10-13 12:47:52,449 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2984.218270833333
[2025-10-13 08:48:24] 2025-10-13 12:47:52,464 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6841070141/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:48:24] 2025-10-13 12:47:52,465 | INFO     | extracted standard info from prmon json
[2025-10-13 08:48:24] 2025-10-13 12:47:52,465 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:48:24] 2025-10-13 12:47:52,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:48:24] 2025-10-13 12:47:52,488 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:48:24] 2025-10-13 12:47:52,488 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:48:24] 2025-10-13 12:47:52,490 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:48:24] 2025-10-13 12:47:52,490 | INFO     | sum of square deviations: 147124589.48717925
[2025-10-13 08:48:24] 2025-10-13 12:47:52,490 | INFO     | sum of deviations: -15142514138.641024
[2025-10-13 08:48:24] 2025-10-13 12:47:52,490 | INFO     | mean x: 1760357187.5128205
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | mean y: 2682450.641025641
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | -- intersect: 181184045089.5092
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | intersect: 181184045089.5092
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | chi2: 0.03603067823858779
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | -- intersect: 181184045089.5092
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | current memory leak: -102.92 B/s (using 78 data points, chi2=0.04)
[2025-10-13 08:48:24] 2025-10-13 12:47:52,491 | INFO     | could have reported an average CPU frequency of 2980 MHz (6 samples)
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | ..............................
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . Timing measurements:
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . get job = 0 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . initial setup = 3 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . payload setup = 23 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . stage-in = 0 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . payload execution = 5136 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . stage-out = 0 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | . log creation = 0 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,492 | INFO     | ..............................
[2025-10-13 08:48:24] 2025-10-13 12:47:52,719 | INFO     | 
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | job summary report
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | --------------------------------------------------
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | PanDA job id: 6841070141
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | task id: 46676269
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | errors: (none)
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | pilot state: finished 
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | transexitcode: 0
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | exeerrorcode: 0
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | exeerrordiag: 
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | exitcode: 0
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | exitmsg: OK
[2025-10-13 08:48:24] 2025-10-13 12:47:52,720 | INFO     | cpuconsumptiontime: 34150 s
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | nevents: 400
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | neventsw: 0
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | pid: 3715714
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | pgrp: 3715714
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | corecount: 8
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | event service: False
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 13: 2349175, 23: 2349231, 5164: 2375790, 5166: 2384844, 5172: 2384982}
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | --------------------------------------------------
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | 
[2025-10-13 08:48:24] 2025-10-13 12:47:52,721 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-13 08:48:24] 2025-10-13 12:47:52,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:48:24] 2025-10-13 12:47:52,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:48:24] 2025-10-13 12:47:52,748 | INFO     | job 6841070141 has completed (purged errors)
[2025-10-13 08:48:24] 2025-10-13 12:47:52,748 | INFO     | overall cleanup function is called
[2025-10-13 08:48:24] 2025-10-13 12:47:53,755 | INFO     | --- collectZombieJob: --- 10, [3715714]
[2025-10-13 08:48:24] 2025-10-13 12:47:53,756 | INFO     | zombie collector waiting for pid 3715714
[2025-10-13 08:48:24] 2025-10-13 12:47:53,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:48:24] 2025-10-13 12:47:53,756 | INFO     | collected zombie processes
[2025-10-13 08:48:24] 2025-10-13 12:47:53,756 | INFO     | will attempt to kill all subprocesses of pid=3715714
[2025-10-13 08:48:24] 2025-10-13 12:47:54,162 | INFO     | process IDs to be killed: [3715714] (in reverse order)
[2025-10-13 08:48:24] 2025-10-13 12:47:54,289 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:48:24] 2025-10-13 12:47:54,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:48:24] 2025-10-13 12:47:54,305 | INFO     | did not find any defunct processes belonging to 3715714
[2025-10-13 08:48:24] 2025-10-13 12:47:54,321 | INFO     | did not find any defunct processes belonging to 3715714
[2025-10-13 08:48:24] 2025-10-13 12:47:54,321 | INFO     | ready for new job
[2025-10-13 08:48:24] 2025-10-13 12:47:54,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:48:24] 2025-10-13 12:47:54,323 | INFO     | ***************************************
[2025-10-13 08:48:24] 2025-10-13 12:47:54,323 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:48:24] 2025-10-13 12:47:54,323 | INFO     | ***************************************
[2025-10-13 08:48:24] 2025-10-13 12:47:54,323 | INFO     | 
[2025-10-13 08:48:24] 2025-10-13 12:47:54,328 | INFO     | architecture information:
[2025-10-13 08:48:24] 2025-10-13 12:47:54,328 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:48:24] 2025-10-13 12:47:54,345 | INFO     | cat /etc/os-release:
[2025-10-13 08:48:24] NAME="CentOS Linux"
[2025-10-13 08:48:24] VERSION="7 (Core)"
[2025-10-13 08:48:24] ID="centos"
[2025-10-13 08:48:24] ID_LIKE="rhel fedora"
[2025-10-13 08:48:24] VERSION_ID="7"
[2025-10-13 08:48:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:48:24] ANSI_COLOR="0;31"
[2025-10-13 08:48:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:48:24] HOME_URL="https://www.centos.org/"
[2025-10-13 08:48:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:48:24] 
[2025-10-13 08:48:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:48:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:48:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:48:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:48:24] 
[2025-10-13 08:48:24] 2025-10-13 12:47:54,345 | INFO     | ***************************************
[2025-10-13 08:48:24] 2025-10-13 12:47:54,849 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-13 08:48:24] 2025-10-13 12:47:54,887 | INFO     | sufficient remaining disk space (127134597120 B)
[2025-10-13 08:48:24] 2025-10-13 12:47:54,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:48:24] 2025-10-13 12:47:54,888 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:48:24] 2025-10-13 12:47:54,888 | INFO     | update_server=False
[2025-10-13 08:48:24] 2025-10-13 12:47:54,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:48:24] 2025-10-13 12:47:54,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:48:24] 2025-10-13 12:47:55,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:48:24] 2025-10-13 12:47:55,055 | INFO     | aborting loop
[2025-10-13 08:48:24] 2025-10-13 12:47:55,507 | INFO     | all payload control threads have been joined
[2025-10-13 08:48:24] 2025-10-13 12:47:55,527 | INFO     | all data control threads have been joined
[2025-10-13 08:48:24] 2025-10-13 12:47:55,893 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,060 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,187 | INFO     | [job] validate thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,319 | INFO     | all job control threads have been joined
[2025-10-13 08:48:24] 2025-10-13 12:47:56,358 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,513 | INFO     | [payload] control thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,533 | INFO     | [data] control thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,628 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,710 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,739 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:56,894 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:57,139 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:57,325 | INFO     | [job] control thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:57,391 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:47:57,591 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:48:24] 2025-10-13 12:47:57,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:48:24] 2025-10-13 12:47:58,597 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:48:01,791 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:48:05,397 | INFO     | job.realtimelogging is not enabled
[2025-10-13 08:48:24] 2025-10-13 12:48:06,402 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:48:24] 2025-10-13 12:48:12,400 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:48:24] 2025-10-13 12:48:12,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415441692480)>', '<ExcThread(monitor, started 140414963152640)>']
[2025-10-13 08:48:24] 2025-10-13 12:48:17,863 | INFO     | all workflow threads have been joined
[2025-10-13 08:48:24] 2025-10-13 12:48:17,864 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:48:24] 2025-10-13 12:48:17,864 | INFO     | traces error code: 0
[2025-10-13 08:48:24] 2025-10-13 12:48:17,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:48:24] 2025-10-13 12:48:24,313 | INFO     | PID=3708911 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:48:24] 2025-10-13 12:48:24,313 | INFO     | .. there are 22 such processes running
[2025-10-13 08:48:24] 2025-10-13 12:48:24,313 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:48:24] 2025-10-13 12:48:24,313 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:48:24] 2025-10-13 12:48:24,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:48:24] 2025-10-13 12:48:24,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:48:24] 2025-10-13 12:48:24,314 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 08:48:24] 2025-10-13 12:48:24,314 | INFO     | [monitor] control thread has ended
[2025-10-13 08:48:24] 2025-10-13 12:48:24,484 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:48:24] 2025-10-13 12:48:24,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:48:24] 2025-10-13 12:48:24,489 [wrapper] pilotpid: 3708911
[2025-10-13 08:48:24] 2025-10-13 12:48:24,491 [wrapper] Pilot exit status: 0
[2025-10-13 08:48:24] 2025-10-13 12:48:24,500 [wrapper] pandaids: 6841070141
[2025-10-13 08:48:24] 2025-10-13 12:48:24,583 [wrapper] cleanup supervisor_pilot 4013591 3708912
[2025-10-13 08:48:24] 2025-10-13 12:48:24,590 [wrapper] Test setup, not cleaning
[2025-10-13 08:48:24] 2025-10-13 12:48:24,593 [wrapper] apfmon messages muted
[2025-10-13 08:48:24] 2025-10-13 12:48:24,596 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:48:24] 2025-10-13 12:48:24,598 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:48:24]  *** Error codes and diagnostics ***
[2025-10-13 08:48:24]     "exeErrorCode": 0,
[2025-10-13 08:48:24]     "exeErrorDiag": "",
[2025-10-13 08:48:24]     "pilotErrorCode": 0,
[2025-10-13 08:48:24]     "pilotErrorDiag": "",
[2025-10-13 08:48:24]  *** Listing of results directory ***
[2025-10-13 08:48:24] total 411424
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 20:48 pilot3.tar.gz
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 21:12 queuedata.json
[2025-10-13 08:48:24] -rwx------. 1 boincer umatlas     36292 Oct 12 21:13 runpilot2-wrapper.sh
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas       100 Oct 13 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:48:24] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 07:20 run_atlas
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas       105 Oct 13 07:20 job.xml
[2025-10-13 08:48:24] -rw-r--r--. 2 boincer umatlas 222069385 Oct 13 07:20 EVNT.46676267._004724.pool.root.1
[2025-10-13 08:48:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 07:20 start_atlas.sh
[2025-10-13 08:48:24] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 07:20 shared
[2025-10-13 08:48:24] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 07:20 input.tar.gz
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas         0 Oct 13 07:20 boinc_lockfile
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 07:20 pandaJob.out
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas    972497 Oct 13 07:21 agis_schedconf.cvmfs.json
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas   1560580 Oct 13 07:21 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:48:24] drwx------. 5 boincer umatlas      4096 Oct 13 07:21 pilot3
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas 193150706 Oct 13 08:47 HITS.46676269._093946.pool.root.1
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas       530 Oct 13 08:47 boinc_task_state.xml
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas      1033 Oct 13 08:47 memory_monitor_summary.json
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas        95 Oct 13 08:47 pilot_heartbeat.json
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas    345302 Oct 13 08:47 log.46676269._093946.job.log.tgz.1
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas      7781 Oct 13 08:47 heartbeat.json
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas      6946 Oct 13 08:48 init_data.xml
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 08:48 boinc_mmap_file
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas        27 Oct 13 08:48 wrapper_checkpoint.txt
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas       893 Oct 13 08:48 pilotlog.txt
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas    746260 Oct 13 08:48 log.46676269._093946.job.log.1
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas       357 Oct 13 08:48 output.list
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas       620 Oct 13 08:48 runtime_log
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas   1105920 Oct 13 08:48 result.tar.gz
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas       651 Oct 13 08:48 yJdNDmtIMS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmILmNDmlKBhxn.diag
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas      8698 Oct 13 08:48 runtime_log.err
[2025-10-13 08:48:24] -rw-r--r--. 1 boincer umatlas     21842 Oct 13 08:48 stderr.txt
[2025-10-13 08:48:24] HITS file was successfully produced:
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas 193150706 Oct 13 08:47 shared/HITS.pool.root.1
[2025-10-13 08:48:24]  *** Contents of shared directory: ***
[2025-10-13 08:48:24] total 407156
[2025-10-13 08:48:24] -rw-r--r--. 2 boincer umatlas 222069385 Oct 13 07:20 ATLAS.root_0
[2025-10-13 08:48:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 07:20 start_atlas.sh
[2025-10-13 08:48:24] -rw-r--r--. 2 boincer umatlas    569682 Oct 13 07:20 input.tar.gz
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas 193150706 Oct 13 08:47 HITS.pool.root.1
[2025-10-13 08:48:24] -rw-------. 1 boincer umatlas   1105920 Oct 13 08:48 result.tar.gz
08:48:26 (3705227): run_atlas exited; CPU time 34271.532716
08:48:26 (3705227): called boinc_finish(0)

</stderr_txt>
]]>

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