Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:53:32 (978009): wrapper (7.7.26015): starting
04:53:32 (978009): wrapper: running run_atlas (--nthreads 3)
[2025-10-15 04:53:32] Arguments: --nthreads 3
[2025-10-15 04:53:32] Threads: 3
[2025-10-15 04:53:32] Checking for CVMFS
[2025-10-15 04:54:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 04:54:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 04:54:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 04:54:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 04:54:21] 2.11.5.0 978228 0 30964 151708 3 1 13926237 15728640 0 130560 0 0 0.000 1293 53 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-15 04:54:21] CVMFS is ok
[2025-10-15 04:54:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 04:54:21] Checking for apptainer binary...
[2025-10-15 04:54:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-15 04:54:21] Running /usr/bin/apptainer --version
[2025-10-15 04:54:22] apptainer version 1.3.4-1.el9
[2025-10-15 04:54:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 04:54:22] testio003
[2025-10-15 04:54:22] apptainer works
[2025-10-15 04:54:22] Set ATHENA_PROC_NUMBER=3
[2025-10-15 04:54:22] Set ATHENA_CORE_NUMBER=3
[2025-10-15 04:54:22] Starting ATLAS job with PandaID=6838117092
[2025-10-15 04:54:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 06:55:07]  *** The last 200 lines of the pilot log: ***
[2025-10-15 06:55:07] 2025-10-14 21:54:03,200 | INFO     | time since job start (7094s) is within the limit (172800.0s)
[2025-10-15 06:55:07] 2025-10-14 21:54:03,659 | INFO     | monitor loop #550: job 0:6838117092 is in state 'finished'
[2025-10-15 06:55:07] 2025-10-14 21:54:03,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,747 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-15 06:55:07] 2025-10-14 21:54:04,748 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3501.04975
[2025-10-15 06:55:07] 2025-10-14 21:54:04,748 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6838117092/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,749 | INFO     | extracted standard info from prmon json
[2025-10-15 06:55:07] 2025-10-14 21:54:04,749 | INFO     | extracted standard memory fields from prmon json
[2025-10-15 06:55:07] 2025-10-14 21:54:04,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-15 06:55:07] 2025-10-14 21:54:04,749 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 06:55:07] 2025-10-14 21:54:04,749 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 06:55:07] 2025-10-14 21:54:04,750 | INFO     | fitting pss+swap vs Time
[2025-10-15 06:55:07] 2025-10-14 21:54:04,750 | INFO     | sum of square deviations: 471562330.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,750 | INFO     | sum of deviations: 6350586352.999997
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | mean x: 1760475250.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | mean y: 2344870.1478260867
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | -- intersect: -23706186083.637768
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | intersect: -23706186083.637768
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | chi2: 1.99497162920854
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | sum of square deviations: 412686807.5
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | sum of deviations: 6269404442.000001
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | mean x: 1760475097.5
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | mean y: 2344660.690909091
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | -- intersect: -26742223364.534576
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | intersect: -26742223364.534576
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | chi2: 1.9991724124051482
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | current chi2=1.9991724124051482 (change=-0.21056856824950343 %)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,751 | INFO     | right removable region: 109
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | sum of square deviations: 412686807.5
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | sum of deviations: -13813582919.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | mean x: 1760475402.5
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | mean y: 2396428.272727273
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | -- intersect: 58929584085.69172
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | intersect: 58929584085.69172
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | chi2: 0.1745885419913688
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | current chi2=0.1745885419913688 (change=91.24857018339489 %)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | sum of square deviations: 358927660.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,752 | INFO     | sum of deviations: -9667391324.999998
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | mean x: 1760475555.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | mean y: 2384600.561904762
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | -- intersect: 47419198641.256226
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | intersect: 47419198641.256226
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | chi2: 0.15475681177316744
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | current chi2=0.15475681177316744 (change=11.359124712308894 %)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | left removable region: 20
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | sum of square deviations: 218571540.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | sum of deviations: 236908932.99999994
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | mean x: 1760475677.0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | mean y: 2352799.2921348317
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | -- intersect: -1905820672.0139766
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | intersect: -1905820672.0139766
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | chi2: 0.0019986368247657234
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | -- intersect: -1905820672.0139766
[2025-10-15 06:55:07] 2025-10-14 21:54:04,753 | INFO     | current memory leak: 1.08 B/s (using 89 data points, chi2=0.00)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | could have reported an average CPU frequency of 3546 MHz (7 samples)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | ..............................
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . Timing measurements:
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . get job = 0 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . initial setup = 7 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . payload setup = 5 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . stage-in = 0 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . payload execution = 6987 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . stage-out = 0 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | . log creation = 0 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,754 | INFO     | ..............................
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | 
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | job summary report
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | --------------------------------------------------
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | PanDA job id: 6838117092
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | task id: 46676269
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | errors: (none)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | pilot state: finished 
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | transexitcode: 0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | exeerrorcode: 0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | exeerrordiag: 
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | exitcode: 0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,791 | INFO     | exitmsg: OK
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | cpuconsumptiontime: 19607 s
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | nevents: 400
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | neventsw: 0
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | pid: 988823
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | pgrp: 988823
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | corecount: 3
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | event service: False
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | sizes: {0: 2348807, 1: 2348949, 4: 2349211, 11: 2349239, 6996: 2376525, 6998: 2385707, 7080: 2385845}
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | --------------------------------------------------
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | 
[2025-10-15 06:55:07] 2025-10-14 21:54:04,792 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-15 06:55:07] 2025-10-14 21:54:04,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | job 6838117092 has completed (purged errors)
[2025-10-15 06:55:07] 2025-10-14 21:54:04,803 | INFO     | overall cleanup function is called
[2025-10-15 06:55:07] 2025-10-14 21:54:05,808 | INFO     | --- collectZombieJob: --- 10, [988823]
[2025-10-15 06:55:07] 2025-10-14 21:54:05,808 | INFO     | zombie collector waiting for pid 988823
[2025-10-15 06:55:07] 2025-10-14 21:54:05,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 06:55:07] 2025-10-14 21:54:05,808 | INFO     | collected zombie processes
[2025-10-15 06:55:07] 2025-10-14 21:54:05,808 | INFO     | will attempt to kill all subprocesses of pid=988823
[2025-10-15 06:55:07] 2025-10-14 21:54:05,845 | INFO     | process IDs to be killed: [988823] (in reverse order)
[2025-10-15 06:55:07] 2025-10-14 21:54:05,867 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 06:55:07] 2025-10-14 21:54:05,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 06:55:07] 2025-10-14 21:54:05,868 | INFO     | did not find any defunct processes belonging to 988823
[2025-10-15 06:55:07] 2025-10-14 21:54:05,869 | INFO     | did not find any defunct processes belonging to 988823
[2025-10-15 06:55:07] 2025-10-14 21:54:05,869 | INFO     | ready for new job
[2025-10-15 06:55:07] 2025-10-14 21:54:05,870 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 06:55:07] 2025-10-14 21:54:05,870 | INFO     | ***************************************
[2025-10-15 06:55:07] 2025-10-14 21:54:05,870 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 06:55:07] 2025-10-14 21:54:05,871 | INFO     | ***************************************
[2025-10-15 06:55:07] 2025-10-14 21:54:05,871 | INFO     | 
[2025-10-15 06:55:07] 2025-10-14 21:54:05,882 | INFO     | architecture information:
[2025-10-15 06:55:07] 2025-10-14 21:54:05,883 | INFO     | executing command: cat /etc/os-release
[2025-10-15 06:55:07] 2025-10-14 21:54:05,891 | INFO     | cat /etc/os-release:
[2025-10-15 06:55:07] NAME="CentOS Linux"
[2025-10-15 06:55:07] VERSION="7 (Core)"
[2025-10-15 06:55:07] ID="centos"
[2025-10-15 06:55:07] ID_LIKE="rhel fedora"
[2025-10-15 06:55:07] VERSION_ID="7"
[2025-10-15 06:55:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 06:55:07] ANSI_COLOR="0;31"
[2025-10-15 06:55:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 06:55:07] HOME_URL="https://www.centos.org/"
[2025-10-15 06:55:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 06:55:07] 
[2025-10-15 06:55:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 06:55:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 06:55:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 06:55:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 06:55:07] 
[2025-10-15 06:55:07] 2025-10-14 21:54:05,891 | INFO     | ***************************************
[2025-10-15 06:55:07] 2025-10-14 21:54:06,393 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-15 06:55:07] 2025-10-14 21:54:06,402 | INFO     | sufficient remaining disk space (42091937792 B)
[2025-10-15 06:55:07] 2025-10-14 21:54:06,402 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 06:55:07] 2025-10-14 21:54:06,402 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 06:55:07] 2025-10-14 21:54:06,402 | INFO     | update_server=False
[2025-10-15 06:55:07] 2025-10-14 21:54:06,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 06:55:07] 2025-10-14 21:54:06,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 06:55:07] 2025-10-14 21:54:06,540 | INFO     | all job control threads have been joined
[2025-10-15 06:55:07] 2025-10-14 21:54:07,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 06:55:07] 2025-10-14 21:54:07,167 | INFO     | aborting loop
[2025-10-15 06:55:07] 2025-10-14 21:54:07,181 | INFO     | all payload control threads have been joined
[2025-10-15 06:55:07] 2025-10-14 21:54:07,237 | INFO     | all data control threads have been joined
[2025-10-15 06:55:07] 2025-10-14 21:54:07,407 | INFO     | [job] retrieve thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:07,407 | INFO     | [job] queue monitor thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:07,545 | INFO     | [job] control thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:07,583 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 06:55:07] 2025-10-14 21:54:07,654 | INFO     | [data] copytool_in thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,064 | INFO     | [job] validate thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,138 | INFO     | [payload] validate_post thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,173 | INFO     | [job] job monitor thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,187 | INFO     | [payload] control thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,229 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,234 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,242 | INFO     | [data] control thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,412 | INFO     | [payload] failed_post thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:08,678 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:09,090 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 06:55:07] 2025-10-14 21:54:09,588 | INFO     | [data] copytool_out thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:13,096 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:16,872 | INFO     | job.realtimelogging is not enabled
[2025-10-15 06:55:07] 2025-10-14 21:54:17,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 06:55:07] 2025-10-14 21:54:36,320 | INFO     | PID=982287 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 06:55:07] 2025-10-14 21:54:36,320 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 06:55:07] 2025-10-14 21:54:36,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 06:55:07] 2025-10-14 21:54:36,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 06:55:07] 2025-10-14 21:55:01,058 | INFO     | [monitor] cgroup control has ended
[2025-10-15 06:55:07] 2025-10-14 21:55:02,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140404116232000)>', '<ExcThread(monitor, started 140403353319168)>']
[2025-10-15 06:55:07] 2025-10-14 21:55:02,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 06:55:07] 2025-10-14 21:55:02,451 | INFO     | [monitor] control thread has ended
[2025-10-15 06:55:07] 2025-10-14 21:55:07,087 | INFO     | all workflow threads have been joined
[2025-10-15 06:55:07] 2025-10-14 21:55:07,087 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 06:55:07] 2025-10-14 21:55:07,088 | INFO     | traces error code: 0
[2025-10-15 06:55:07] 2025-10-14 21:55:07,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 06:55:07] 2025-10-14 21:55:07,147 [wrapper] ==== pilot stdout END ====
[2025-10-15 06:55:07] 2025-10-14 21:55:07,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 06:55:07] 2025-10-14 21:55:07,150 [wrapper] pilotpid: 982287
[2025-10-15 06:55:07] 2025-10-14 21:55:07,152 [wrapper] Pilot exit status: 0
[2025-10-15 06:55:07] 2025-10-14 21:55:07,158 [wrapper] pandaids: 6838117092
[2025-10-15 06:55:07] 2025-10-14 21:55:07,171 [wrapper] cleanup supervisor_pilot 1003048 982288
[2025-10-15 06:55:07] 2025-10-14 21:55:07,173 [wrapper] Test setup, not cleaning
[2025-10-15 06:55:07] 2025-10-14 21:55:07,174 [wrapper] apfmon messages muted
[2025-10-15 06:55:07] 2025-10-14 21:55:07,176 [wrapper] ==== wrapper stdout END ====
[2025-10-15 06:55:07] 2025-10-14 21:55:07,178 [wrapper] ==== wrapper stderr END ====
[2025-10-15 06:55:07]  *** Error codes and diagnostics ***
[2025-10-15 06:55:07]     "exeErrorCode": 0,
[2025-10-15 06:55:07]     "exeErrorDiag": "",
[2025-10-15 06:55:07]     "pilotErrorCode": 0,
[2025-10-15 06:55:07]     "pilotErrorDiag": "",
[2025-10-15 06:55:07]  *** Listing of results directory ***
[2025-10-15 06:55:07] total 411808
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc    557409 Oct 11 14:13 pilot3.tar.gz
[2025-10-15 06:55:07] -rwx------. 1 boinc boinc     36292 Oct 11 14:19 runpilot2-wrapper.sh
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc      5112 Oct 11 14:19 queuedata.json
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc       100 Oct 15 04:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 06:55:07] -rwxr-xr-x. 1 boinc boinc      7986 Oct 15 04:53 run_atlas
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc       105 Oct 15 04:53 job.xml
[2025-10-15 06:55:07] -rw-r--r--. 2 boinc boinc     15120 Oct 15 04:53 start_atlas.sh
[2025-10-15 06:55:07] drwxrwx--x. 2 boinc boinc        68 Oct 15 04:53 shared
[2025-10-15 06:55:07] -rw-r--r--. 2 boinc boinc    569677 Oct 15 04:53 input.tar.gz
[2025-10-15 06:55:07] -rw-r--r--. 2 boinc boinc 219736155 Oct 15 04:53 EVNT.46676267._002083.pool.root.1
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc         0 Oct 15 04:53 boinc_lockfile
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc      2550 Oct 15 04:54 pandaJob.out
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc    974007 Oct 15 04:55 agis_schedconf.cvmfs.json
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc   1560740 Oct 15 04:55 agis_ddmendpoints.agis.ALL.json
[2025-10-15 06:55:07] drwx------. 5 boinc boinc      4096 Oct 15 04:55 pilot3
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc      9297 Oct 15 05:28 init_data.xml
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc 195520192 Oct 15 06:52 HITS.46676269._051822.pool.root.1
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc       529 Oct 15 06:52 boinc_task_state.xml
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc      1011 Oct 15 06:52 memory_monitor_summary.json
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc    270741 Oct 15 06:52 log.46676269._051822.job.log.tgz.1
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc      7754 Oct 15 06:54 heartbeat.json
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc        95 Oct 15 06:54 pilot_heartbeat.json
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc        27 Oct 15 06:54 wrapper_checkpoint.txt
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc      8192 Oct 15 06:54 boinc_mmap_file
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc      4819 Oct 15 06:55 pilotlog.txt
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc   1003391 Oct 15 06:55 log.46676269._051822.job.log.1
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc       357 Oct 15 06:55 output.list
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc       620 Oct 15 06:55 runtime_log
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc   1290240 Oct 15 06:55 result.tar.gz
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc      8661 Oct 15 06:55 runtime_log.err
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc       643 Oct 15 06:55 D3bLDmyBhR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlUfNDmGUD0hm.diag
[2025-10-15 06:55:07] -rw-r--r--. 1 boinc boinc     20764 Oct 15 06:55 stderr.txt
[2025-10-15 06:55:07] HITS file was successfully produced:
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc 195520192 Oct 15 06:52 shared/HITS.pool.root.1
[2025-10-15 06:55:07]  *** Contents of shared directory: ***
[2025-10-15 06:55:07] total 407364
[2025-10-15 06:55:07] -rw-r--r--. 2 boinc boinc     15120 Oct 15 04:53 start_atlas.sh
[2025-10-15 06:55:07] -rw-r--r--. 2 boinc boinc    569677 Oct 15 04:53 input.tar.gz
[2025-10-15 06:55:07] -rw-r--r--. 2 boinc boinc 219736155 Oct 15 04:53 ATLAS.root_0
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc 195520192 Oct 15 06:52 HITS.pool.root.1
[2025-10-15 06:55:07] -rw-------. 1 boinc boinc   1290240 Oct 15 06:55 result.tar.gz
06:55:09 (978009): run_atlas exited; CPU time 19636.964448
06:55:09 (978009): called boinc_finish(0)

</stderr_txt>
]]>

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