Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:37:19 (2902762): wrapper (7.7.26015): starting
09:37:19 (2902762): wrapper: running run_atlas (--nthreads 6)
[2025-10-14 09:37:19] Arguments: --nthreads 6
[2025-10-14 09:37:19] Threads: 6
[2025-10-14 09:37:19] Checking for CVMFS
[2025-10-14 09:37:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-14 09:37:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-14 09:37:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-14 09:37:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-14 09:37:19] 2.11.5.0 2717720 256 59108 151678 1 57 42970867 52428801 37 130560 0 582145 99.993 12064 18 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-14 09:37:19] CVMFS is ok
[2025-10-14 09:37:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 09:37:19] Checking for apptainer binary...
[2025-10-14 09:37:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-14 09:37:19] Running /usr/bin/apptainer --version
[2025-10-14 09:37:19] apptainer version 1.3.6-1.el9
[2025-10-14 09:37:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 09:37:19] testio002
[2025-10-14 09:37:19] apptainer works
[2025-10-14 09:37:19] Set ATHENA_PROC_NUMBER=6
[2025-10-14 09:37:19] Set ATHENA_CORE_NUMBER=6
[2025-10-14 09:37:19] Starting ATLAS job with PandaID=6842814277
[2025-10-14 09:37:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 10:36:05]  *** The last 200 lines of the pilot log: ***
[2025-10-14 10:36:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/3f/log.46676269._096665.job.log.tgz.1
[2025-10-14 10:36:05]  workdir=None
[2025-10-14 10:36:05] ]
[2025-10-14 10:36:05] 2025-10-14 01:35:29,314 | INFO     | transferring file log.46676269._096665.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6842814277/log.46676269._096665.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-14 10:36:05] 2025-10-14 01:35:29,314 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6842814277/log.46676269._096665.job.log.tgz.1 /var/lib/boinc/slots/3/log.46676269._096665.job
[2025-10-14 10:36:05] 2025-10-14 01:35:29,320 | INFO     | adding to output.list: log.46676269._096665.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/3f/log.46676269._096665.job.log.tg
[2025-10-14 10:36:05] 2025-10-14 01:35:29,320 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-14 10:36:05] 2025-10-14 01:35:29,320 | INFO     | summary of transferred files:
[2025-10-14 10:36:05] 2025-10-14 01:35:29,320 | INFO     |  -- lfn=log.46676269._096665.job.log.tgz.1, status_code=0, status=transferred
[2025-10-14 10:36:05] 2025-10-14 01:35:29,320 | INFO     | stage-out finished correctly
[2025-10-14 10:36:05] 2025-10-14 01:35:30,700 | INFO     | time since job start (3469s) is within the limit (172800.0s)
[2025-10-14 10:36:05] 2025-10-14 01:35:30,784 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-14 10:36:05] 2025-10-14 01:35:32,320 | INFO     | job 6842814277 has state=finished
[2025-10-14 10:36:05] 2025-10-14 01:35:32,320 | INFO     | preparing for final server update for job 6842814277 in state='finished'
[2025-10-14 10:36:05] 2025-10-14 01:35:32,321 | INFO     | this job has now completed (state=finished)
[2025-10-14 10:36:05] 2025-10-14 01:35:32,321 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-14 10:36:05] 2025-10-14 01:35:32,321 | INFO     | log transfer has been attempted: DONE
[2025-10-14 10:36:05] 2025-10-14 01:35:32,322 | INFO     | job 6842814277 has finished - writing final server update
[2025-10-14 10:36:05] 2025-10-14 01:35:32,322 | INFO     | total number of processed events: 400 (read)
[2025-10-14 10:36:05] 2025-10-14 01:35:32,323 | INFO     | executing command: lscpu
[2025-10-14 10:36:05] 2025-10-14 01:35:32,335 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-14 10:36:05] 2025-10-14 01:35:32,705 | INFO     | time since job start (3471s) is within the limit (172800.0s)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,410 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-14 10:36:05] 2025-10-14 01:35:33,411 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3786.0285624999997
[2025-10-14 10:36:05] 2025-10-14 01:35:33,412 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6842814277/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,412 | INFO     | extracted standard info from prmon json
[2025-10-14 10:36:05] 2025-10-14 01:35:33,412 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 10:36:05] 2025-10-14 01:35:33,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 10:36:05] 2025-10-14 01:35:33,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 10:36:05] 2025-10-14 01:35:33,412 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | fitting pss+swap vs Time
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | sum of square deviations: 38744912.5
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | sum of deviations: -2935053704.5
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | mean x: 1760404076.5
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | mean y: 2532254.26
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | -- intersect: 133358892425.37218
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | intersect: 133358892425.37218
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | chi2: 0.03450900112186779
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | -- intersect: 133358892425.37218
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | current memory leak: -75.75 B/s (using 50 data points, chi2=0.03)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | could have reported an average CPU frequency of 4256 MHz (5 samples)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,413 | INFO     | ..............................
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . Timing measurements:
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . get job = 0 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . initial setup = 20 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . payload setup = 1 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . stage-in = 0 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . payload execution = 3450 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . stage-out = 0 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | . log creation = 0 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,414 | INFO     | ..............................
[2025-10-14 10:36:05] 2025-10-14 01:35:33,599 | INFO     | 
[2025-10-14 10:36:05] 2025-10-14 01:35:33,599 | INFO     | job summary report
[2025-10-14 10:36:05] 2025-10-14 01:35:33,599 | INFO     | --------------------------------------------------
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | PanDA job id: 6842814277
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | task id: 46676269
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | errors: (none)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | pilot state: finished 
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | transexitcode: 0
[2025-10-14 10:36:05] 2025-10-14 01:35:33,600 | INFO     | exeerrorcode: 0
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | exeerrordiag: 
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | exitcode: 0
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | exitmsg: OK
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | cpuconsumptiontime: 18774 s
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | nevents: 400
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | neventsw: 0
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | pid: 2922407
[2025-10-14 10:36:05] 2025-10-14 01:35:33,601 | INFO     | pgrp: 2922407
[2025-10-14 10:36:05] 2025-10-14 01:35:33,602 | INFO     | corecount: 6
[2025-10-14 10:36:05] 2025-10-14 01:35:33,602 | INFO     | event service: False
[2025-10-14 10:36:05] 2025-10-14 01:35:33,602 | INFO     | sizes: {0: 2348856, 1: 2349118, 10: 2349146, 3456: 2383812, 3457: 2383812, 3460: 2384038}
[2025-10-14 10:36:05] 2025-10-14 01:35:33,602 | INFO     | --------------------------------------------------
[2025-10-14 10:36:05] 2025-10-14 01:35:33,602 | INFO     | 
[2025-10-14 10:36:05] 2025-10-14 01:35:33,602 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-14 10:36:05] 2025-10-14 01:35:33,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | job 6842814277 has completed (purged errors)
[2025-10-14 10:36:05] 2025-10-14 01:35:33,622 | INFO     | overall cleanup function is called
[2025-10-14 10:36:05] 2025-10-14 01:35:33,749 | INFO     | PID=2908954 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 10:36:05] 2025-10-14 01:35:34,628 | INFO     | --- collectZombieJob: --- 10, [2922407]
[2025-10-14 10:36:05] 2025-10-14 01:35:34,628 | INFO     | zombie collector waiting for pid 2922407
[2025-10-14 10:36:05] 2025-10-14 01:35:34,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 10:36:05] 2025-10-14 01:35:34,628 | INFO     | collected zombie processes
[2025-10-14 10:36:05] 2025-10-14 01:35:34,628 | INFO     | will attempt to kill all subprocesses of pid=2922407
[2025-10-14 10:36:05] 2025-10-14 01:35:34,658 | INFO     | process IDs to be killed: [2922407] (in reverse order)
[2025-10-14 10:36:05] 2025-10-14 01:35:34,671 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 10:36:05] 2025-10-14 01:35:34,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 10:36:05] 2025-10-14 01:35:34,672 | INFO     | did not find any defunct processes belonging to 2922407
[2025-10-14 10:36:05] 2025-10-14 01:35:34,673 | INFO     | did not find any defunct processes belonging to 2922407
[2025-10-14 10:36:05] 2025-10-14 01:35:34,673 | INFO     | ready for new job
[2025-10-14 10:36:05] 2025-10-14 01:35:34,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 10:36:05] 2025-10-14 01:35:34,674 | INFO     | ***************************************
[2025-10-14 10:36:05] 2025-10-14 01:35:34,674 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 10:36:05] 2025-10-14 01:35:34,674 | INFO     | ***************************************
[2025-10-14 10:36:05] 2025-10-14 01:35:34,674 | INFO     | 
[2025-10-14 10:36:05] 2025-10-14 01:35:34,674 | INFO     | architecture information:
[2025-10-14 10:36:05] 2025-10-14 01:35:34,674 | INFO     | executing command: cat /etc/os-release
[2025-10-14 10:36:05] 2025-10-14 01:35:34,678 | INFO     | cat /etc/os-release:
[2025-10-14 10:36:05] NAME="CentOS Linux"
[2025-10-14 10:36:05] VERSION="7 (Core)"
[2025-10-14 10:36:05] ID="centos"
[2025-10-14 10:36:05] ID_LIKE="rhel fedora"
[2025-10-14 10:36:05] VERSION_ID="7"
[2025-10-14 10:36:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 10:36:05] ANSI_COLOR="0;31"
[2025-10-14 10:36:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 10:36:05] HOME_URL="https://www.centos.org/"
[2025-10-14 10:36:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 10:36:05] 
[2025-10-14 10:36:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 10:36:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 10:36:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 10:36:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 10:36:05] 
[2025-10-14 10:36:05] 2025-10-14 01:35:34,678 | INFO     | ***************************************
[2025-10-14 10:36:05] 2025-10-14 01:35:35,140 | WARNING  | process 2922407 can no longer be monitored (due to stat problems) - aborting
[2025-10-14 10:36:05] 2025-10-14 01:35:35,161 | INFO     | using path: /var/lib/boinc/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 10:36:05] 2025-10-14 01:35:35,161 | INFO     | using path: /var/lib/boinc/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 10:36:05] 2025-10-14 01:35:35,161 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-14 10:36:05] 2025-10-14 01:35:35,161 | WARNING  | maxPSS not found in memory monitor output
[2025-10-14 10:36:05] 2025-10-14 01:35:35,161 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/3/PanDA_Pilot-6842814277/payload.stdout) since it has not been created yet
[2025-10-14 10:36:05] 2025-10-14 01:35:35,161 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-14 10:36:05] 2025-10-14 01:35:35,167 | INFO     | sufficient remaining disk space (304124788736 B)
[2025-10-14 10:36:05] 2025-10-14 01:35:35,167 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-14 10:36:05] 2025-10-14 01:35:35,167 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/3/PanDA_Pilot-6842814277/HITS.46676269._096665.pool.root.1 since it does not exist
[2025-10-14 10:36:05] 2025-10-14 01:35:35,181 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-14 10:36:05] 2025-10-14 01:35:35,185 | INFO     | sufficient remaining disk space (304124788736 B)
[2025-10-14 10:36:05] 2025-10-14 01:35:35,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 10:36:05] 2025-10-14 01:35:35,185 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 10:36:05] 2025-10-14 01:35:35,185 | INFO     | update_server=False
[2025-10-14 10:36:05] 2025-10-14 01:35:35,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 10:36:05] 2025-10-14 01:35:35,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 10:36:05] 2025-10-14 01:35:35,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 10:36:05] 2025-10-14 01:35:35,197 | INFO     | number of running child processes to parent process 2922407: 1
[2025-10-14 10:36:05] 2025-10-14 01:35:35,197 | INFO     | maximum number of monitored processes: 6
[2025-10-14 10:36:05] 2025-10-14 01:35:35,197 | INFO     | aborting job monitoring since job object (job id=6842814277) has expired
[2025-10-14 10:36:05] 2025-10-14 01:35:35,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 10:36:05] 2025-10-14 01:35:35,197 | INFO     | will abort loop
[2025-10-14 10:36:05] 2025-10-14 01:35:35,256 | INFO     | all payload control threads have been joined
[2025-10-14 10:36:05] 2025-10-14 01:35:35,835 | INFO     | all data control threads have been joined
[2025-10-14 10:36:05] 2025-10-14 01:35:36,191 | INFO     | [job] retrieve thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,191 | INFO     | [job] queue monitor thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,202 | INFO     | [job] job monitor thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,258 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,262 | INFO     | [payload] control thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,329 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,505 | INFO     | [payload] validate_post thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:36,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 10:36:05] 2025-10-14 01:35:36,835 | INFO     | all job control threads have been joined
[2025-10-14 10:36:05] 2025-10-14 01:35:36,841 | INFO     | [data] control thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:37,191 | INFO     | [data] copytool_out thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:37,459 | INFO     | [data] copytool_in thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:37,571 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:37,623 | INFO     | [payload] failed_post thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:37,653 | INFO     | [job] validate thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:37,837 | INFO     | [job] control thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:40,821 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:46,168 | INFO     | job.realtimelogging is not enabled
[2025-10-14 10:36:05] 2025-10-14 01:35:46,982 | INFO     | [monitor] cgroup control has ended
[2025-10-14 10:36:05] 2025-10-14 01:35:47,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 10:36:05] 2025-10-14 01:35:47,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640344880960)>', '<ExcThread(monitor, started 140639710738176)>']
[2025-10-14 10:36:05] 2025-10-14 01:35:52,824 | INFO     | all workflow threads have been joined
[2025-10-14 10:36:05] 2025-10-14 01:35:52,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 10:36:05] 2025-10-14 01:35:52,825 | INFO     | traces error code: 0
[2025-10-14 10:36:05] 2025-10-14 01:35:52,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 10:36:05] 2025-10-14 01:36:05,882 | INFO     | PID=2908954 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 10:36:05] 2025-10-14 01:36:05,882 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 10:36:05] 2025-10-14 01:36:05,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 10:36:05] 2025-10-14 01:36:05,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 10:36:05] 2025-10-14 01:36:05,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 10:36:05] 2025-10-14 01:36:05,882 | INFO     | [monitor] control thread has ended
[2025-10-14 10:36:05] 2025-10-14 01:36:05,914 [wrapper] ==== pilot stdout END ====
[2025-10-14 10:36:05] 2025-10-14 01:36:05,915 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 10:36:05] 2025-10-14 01:36:05,915 [wrapper] pilotpid: 2908954
[2025-10-14 10:36:05] 2025-10-14 01:36:05,916 [wrapper] Pilot exit status: 0
[2025-10-14 10:36:05] 2025-10-14 01:36:05,918 [wrapper] pandaids: 6842814277
[2025-10-14 10:36:05] 2025-10-14 01:36:05,925 [wrapper] cleanup supervisor_pilot 2940931 2908955
[2025-10-14 10:36:05] 2025-10-14 01:36:05,925 [wrapper] Test setup, not cleaning
[2025-10-14 10:36:05] 2025-10-14 01:36:05,926 [wrapper] apfmon messages muted
[2025-10-14 10:36:05] 2025-10-14 01:36:05,927 [wrapper] ==== wrapper stdout END ====
[2025-10-14 10:36:05] 2025-10-14 01:36:05,927 [wrapper] ==== wrapper stderr END ====
[2025-10-14 10:36:05]  *** Error codes and diagnostics ***
[2025-10-14 10:36:05]     "exeErrorCode": 0,
[2025-10-14 10:36:05]     "exeErrorDiag": "",
[2025-10-14 10:36:05]     "pilotErrorCode": 0,
[2025-10-14 10:36:05]     "pilotErrorDiag": "",
[2025-10-14 10:36:05]  *** Listing of results directory ***
[2025-10-14 10:36:05] total 412912
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc    557409 Oct 13 18:31 pilot3.tar.gz
[2025-10-14 10:36:05] -rwx------. 1 boinc boinc     36292 Oct 13 19:26 runpilot2-wrapper.sh
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc      5112 Oct 13 19:26 queuedata.json
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc       100 Oct 14 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 10:36:05] -rwxr-xr-x. 1 boinc boinc      7986 Oct 14 09:37 run_atlas
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc       105 Oct 14 09:37 job.xml
[2025-10-14 10:36:05] -rw-r--r--. 2 boinc boinc     15120 Oct 14 09:37 start_atlas.sh
[2025-10-14 10:36:05] drwxrwx--x. 2 boinc boinc        68 Oct 14 09:37 shared
[2025-10-14 10:36:05] -rw-r--r--. 2 boinc boinc    569685 Oct 14 09:37 input.tar.gz
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc      9628 Oct 14 09:37 init_data.xml
[2025-10-14 10:36:05] -rw-r--r--. 2 boinc boinc 221902214 Oct 14 09:37 EVNT.46676267._002363.pool.root.1
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc         0 Oct 14 09:37 boinc_lockfile
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc      2549 Oct 14 09:37 pandaJob.out
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc    972807 Oct 14 09:37 agis_schedconf.cvmfs.json
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc   1560580 Oct 14 09:37 agis_ddmendpoints.agis.ALL.json
[2025-10-14 10:36:05] drwx------. 5 boinc boinc      4096 Oct 14 09:37 pilot3
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc 195432841 Oct 14 10:35 HITS.46676269._096665.pool.root.1
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc       529 Oct 14 10:35 boinc_task_state.xml
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc      1024 Oct 14 10:35 memory_monitor_summary.json
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc    267820 Oct 14 10:35 log.46676269._096665.job.log.tgz.1
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc      7792 Oct 14 10:35 heartbeat.json
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc      8192 Oct 14 10:35 boinc_mmap_file
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc        27 Oct 14 10:35 wrapper_checkpoint.txt
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc       747 Oct 14 10:36 pilotlog.txt
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc        95 Oct 14 10:36 pilot_heartbeat.json
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc    528926 Oct 14 10:36 log.46676269._096665.job.log.1
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc       357 Oct 14 10:36 output.list
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc       620 Oct 14 10:36 runtime_log
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc    819200 Oct 14 10:36 result.tar.gz
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc      8661 Oct 14 10:36 runtime_log.err
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc       641 Oct 14 10:36 MNvLDmfwUS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6kmNDmheW35m.diag
[2025-10-14 10:36:05] -rw-r--r--. 1 boinc boinc     22184 Oct 14 10:36 stderr.txt
[2025-10-14 10:36:05] HITS file was successfully produced:
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc 195432841 Oct 14 10:35 shared/HITS.pool.root.1
[2025-10-14 10:36:05]  *** Contents of shared directory: ***
[2025-10-14 10:36:05] total 408936
[2025-10-14 10:36:05] -rw-r--r--. 2 boinc boinc     15120 Oct 14 09:37 start_atlas.sh
[2025-10-14 10:36:05] -rw-r--r--. 2 boinc boinc    569685 Oct 14 09:37 input.tar.gz
[2025-10-14 10:36:05] -rw-r--r--. 2 boinc boinc 221902214 Oct 14 09:37 ATLAS.root_0
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc 195432841 Oct 14 10:35 HITS.pool.root.1
[2025-10-14 10:36:05] -rw-------. 1 boinc boinc    819200 Oct 14 10:36 result.tar.gz
10:36:07 (2902762): run_atlas exited; CPU time 18795.511269
10:36:07 (2902762): called boinc_finish(0)

</stderr_txt>
]]>

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