Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:19:15 (28339): wrapper (7.7.26015): starting
06:19:15 (28339): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 06:19:15] Arguments: --nthreads 8
[2025-10-13 06:19:15] Threads: 8
[2025-10-13 06:19:15] Checking for CVMFS
[2025-10-13 06:19:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:19:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:19:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:19:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:19:16] 2.11.2.0 8814 54172 112752 151658 3 9 18346261 18432001 1833 130560 0 49686709 99.974 2430209 39816 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 06:19:16] CVMFS is ok
[2025-10-13 06:19:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:19:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:19:16] Further information can be found at the LHC@home message board.
[2025-10-13 06:19:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:19:16] Checking for apptainer binary...
[2025-10-13 06:19:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:19:16] Running /usr/bin/apptainer --version
[2025-10-13 06:19:16] apptainer version 1.3.2-1.el7
[2025-10-13 06:19:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:19:17] c-206-19.aglt2.org
[2025-10-13 06:19:17] apptainer works
[2025-10-13 06:19:17] Set ATHENA_PROC_NUMBER=8
[2025-10-13 06:19:17] Set ATHENA_CORE_NUMBER=8
[2025-10-13 06:19:17] Starting ATLAS job with PandaID=6842733988
[2025-10-13 06:19:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:09:51]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:09:51] 2025-10-13 13:09:06,672 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 09:09:51] 2025-10-13 13:09:06,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:09:51] 2025-10-13 13:09:06,672 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:09:51] 2025-10-13 13:09:06,677 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:09:51] 2025-10-13 13:09:06,678 | INFO     | sum of square deviations: 1444149868.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,679 | INFO     | sum of deviations: -25352308575.999992
[2025-10-13 09:09:51] 2025-10-13 13:09:06,679 | INFO     | mean x: 1760355856.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,679 | INFO     | mean y: 2519489.3413173654
[2025-10-13 09:09:51] 2025-10-13 13:09:06,679 | INFO     | -- intersect: 30905880597.34552
[2025-10-13 09:09:51] 2025-10-13 13:09:06,680 | INFO     | intersect: 30905880597.34552
[2025-10-13 09:09:51] 2025-10-13 13:09:06,680 | INFO     | chi2: 2.3553507469362898
[2025-10-13 09:09:51] 2025-10-13 13:09:06,680 | INFO     | sum of square deviations: 1318277740.5
[2025-10-13 09:09:51] 2025-10-13 13:09:06,682 | INFO     | sum of deviations: -13264693146.000004
[2025-10-13 09:09:51] 2025-10-13 13:09:06,682 | INFO     | mean x: 1760355703.5
[2025-10-13 09:09:51] 2025-10-13 13:09:06,682 | INFO     | mean y: 2533811.061728395
[2025-10-13 09:09:51] 2025-10-13 13:09:06,682 | INFO     | -- intersect: 17715476628.318123
[2025-10-13 09:09:51] 2025-10-13 13:09:06,682 | INFO     | intersect: 17715476628.318123
[2025-10-13 09:09:51] 2025-10-13 13:09:06,683 | INFO     | chi2: 1.5853523169255408
[2025-10-13 09:09:51] 2025-10-13 13:09:06,683 | INFO     | current chi2=1.5853523169255408 (change=32.69145502054505 %)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,683 | INFO     | sum of square deviations: 1199940638.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,684 | INFO     | sum of deviations: -12384910459.000002
[2025-10-13 09:09:51] 2025-10-13 13:09:06,685 | INFO     | mean x: 1760355551.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,685 | INFO     | mean y: 2534945.1910828026
[2025-10-13 09:09:51] 2025-10-13 13:09:06,685 | INFO     | -- intersect: 18171638636.41769
[2025-10-13 09:09:51] 2025-10-13 13:09:06,685 | INFO     | intersect: 18171638636.41769
[2025-10-13 09:09:51] 2025-10-13 13:09:06,685 | INFO     | chi2: 1.5842802387859305
[2025-10-13 09:09:51] 2025-10-13 13:09:06,686 | INFO     | current chi2=1.5842802387859305 (change=0.06762396775559461 %)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,686 | INFO     | right removable region: 156
[2025-10-13 09:09:51] 2025-10-13 13:09:06,686 | INFO     | sum of square deviations: 1318277740.5
[2025-10-13 09:09:51] 2025-10-13 13:09:06,687 | INFO     | sum of deviations: -49813042097.5
[2025-10-13 09:09:51] 2025-10-13 13:09:06,688 | INFO     | mean x: 1760356008.5
[2025-10-13 09:09:51] 2025-10-13 13:09:06,688 | INFO     | mean y: 2548716.0308641978
[2025-10-13 09:09:51] 2025-10-13 13:09:06,688 | INFO     | -- intersect: 66520161252.47464
[2025-10-13 09:09:51] 2025-10-13 13:09:06,688 | INFO     | intersect: 66520161252.47464
[2025-10-13 09:09:51] 2025-10-13 13:09:06,688 | INFO     | chi2: 0.9557915560615712
[2025-10-13 09:09:51] 2025-10-13 13:09:06,689 | INFO     | current chi2=0.9557915560615712 (change=59.420415099330235 %)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,689 | INFO     | sum of square deviations: 1199940638.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,690 | INFO     | sum of deviations: -46575090269.999985
[2025-10-13 09:09:51] 2025-10-13 13:09:06,690 | INFO     | mean x: 1760356161.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,691 | INFO     | mean y: 2544516.9044585987
[2025-10-13 09:09:51] 2025-10-13 13:09:06,691 | INFO     | -- intersect: 68329880477.94024
[2025-10-13 09:09:51] 2025-10-13 13:09:06,691 | INFO     | intersect: 68329880477.94024
[2025-10-13 09:09:51] 2025-10-13 13:09:06,691 | INFO     | chi2: 0.953988004442508
[2025-10-13 09:09:51] 2025-10-13 13:09:06,692 | INFO     | current chi2=0.953988004442508 (change=0.18869717017535786 %)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,692 | INFO     | left removable region: 20
[2025-10-13 09:09:51] 2025-10-13 13:09:06,692 | INFO     | sum of square deviations: 779958810.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,693 | INFO     | sum of deviations: -25025974680.0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,693 | INFO     | mean x: 1760356130.5
[2025-10-13 09:09:51] 2025-10-13 13:09:06,694 | INFO     | mean y: 2550207.4411764704
[2025-10-13 09:09:51] 2025-10-13 13:09:06,694 | INFO     | -- intersect: 56485825202.0217
[2025-10-13 09:09:51] 2025-10-13 13:09:06,694 | INFO     | intersect: 56485825202.0217
[2025-10-13 09:09:51] 2025-10-13 13:09:06,694 | INFO     | chi2: 0.1432401150622771
[2025-10-13 09:09:51] 2025-10-13 13:09:06,695 | INFO     | -- intersect: 56485825202.0217
[2025-10-13 09:09:51] 2025-10-13 13:09:06,695 | INFO     | current memory leak: -32.09 B/s (using 136 data points, chi2=0.14)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,695 | INFO     | could have reported an average CPU frequency of 2521 MHz (9 samples)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,695 | INFO     | ..............................
[2025-10-13 09:09:51] 2025-10-13 13:09:06,696 | INFO     | . Timing measurements:
[2025-10-13 09:09:51] 2025-10-13 13:09:06,696 | INFO     | . get job = 0 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,696 | INFO     | . initial setup = 2 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,696 | INFO     | . payload setup = 4 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,696 | INFO     | . stage-in = 0 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,696 | INFO     | . payload execution = 10145 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,697 | INFO     | . stage-out = 0 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,697 | INFO     | . log creation = 0 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,697 | INFO     | ..............................
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | 
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | job summary report
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | --------------------------------------------------
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | PanDA job id: 6842733988
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | task id: 46676269
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | errors: (none)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,944 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | pilot state: finished 
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | transexitcode: 0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | exeerrorcode: 0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | exeerrordiag: 
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | exitcode: 0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | exitmsg: OK
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | cpuconsumptiontime: 77331 s
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | nevents: 400
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | neventsw: 0
[2025-10-13 09:09:51] 2025-10-13 13:09:06,945 | INFO     | pid: 6416
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | pgrp: 6416
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | corecount: 8
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | event service: False
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | sizes: {0: 2348635, 1: 2348834, 4: 2349096, 12: 2349124, 10154: 2386867, 10158: 2386867, 10163: 2387253}
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | --------------------------------------------------
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | 
[2025-10-13 09:09:51] 2025-10-13 13:09:06,946 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 09:09:51] 2025-10-13 13:09:06,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,965 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:09:51] 2025-10-13 13:09:06,966 | INFO     | job 6842733988 has completed (purged errors)
[2025-10-13 09:09:51] 2025-10-13 13:09:06,966 | INFO     | overall cleanup function is called
[2025-10-13 09:09:51] 2025-10-13 13:09:07,973 | INFO     | --- collectZombieJob: --- 10, [6416]
[2025-10-13 09:09:51] 2025-10-13 13:09:07,973 | INFO     | zombie collector waiting for pid 6416
[2025-10-13 09:09:51] 2025-10-13 13:09:07,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:09:51] 2025-10-13 13:09:07,973 | INFO     | collected zombie processes
[2025-10-13 09:09:51] 2025-10-13 13:09:07,973 | INFO     | will attempt to kill all subprocesses of pid=6416
[2025-10-13 09:09:51] 2025-10-13 13:09:08,073 | INFO     | process IDs to be killed: [6416] (in reverse order)
[2025-10-13 09:09:51] 2025-10-13 13:09:08,135 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:09:51] 2025-10-13 13:09:08,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:09:51] 2025-10-13 13:09:08,137 | INFO     | did not find any defunct processes belonging to 6416
[2025-10-13 09:09:51] 2025-10-13 13:09:08,140 | INFO     | did not find any defunct processes belonging to 6416
[2025-10-13 09:09:51] 2025-10-13 13:09:08,140 | INFO     | ready for new job
[2025-10-13 09:09:51] 2025-10-13 13:09:08,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:09:51] 2025-10-13 13:09:08,141 | INFO     | ***************************************
[2025-10-13 09:09:51] 2025-10-13 13:09:08,141 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:09:51] 2025-10-13 13:09:08,141 | INFO     | ***************************************
[2025-10-13 09:09:51] 2025-10-13 13:09:08,142 | INFO     | 
[2025-10-13 09:09:51] 2025-10-13 13:09:08,142 | INFO     | architecture information:
[2025-10-13 09:09:51] 2025-10-13 13:09:08,143 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:09:51] 2025-10-13 13:09:08,152 | INFO     | cat /etc/os-release:
[2025-10-13 09:09:51] NAME="CentOS Linux"
[2025-10-13 09:09:51] VERSION="7 (Core)"
[2025-10-13 09:09:51] ID="centos"
[2025-10-13 09:09:51] ID_LIKE="rhel fedora"
[2025-10-13 09:09:51] VERSION_ID="7"
[2025-10-13 09:09:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:09:51] ANSI_COLOR="0;31"
[2025-10-13 09:09:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:09:51] HOME_URL="https://www.centos.org/"
[2025-10-13 09:09:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:09:51] 
[2025-10-13 09:09:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:09:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:09:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:09:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:09:51] 
[2025-10-13 09:09:51] 2025-10-13 13:09:08,152 | INFO     | ***************************************
[2025-10-13 09:09:51] 2025-10-13 13:09:08,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 09:09:51] 2025-10-13 13:09:08,666 | INFO     | sufficient remaining disk space (28633464832 B)
[2025-10-13 09:09:51] 2025-10-13 13:09:08,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:09:51] 2025-10-13 13:09:08,667 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:09:51] 2025-10-13 13:09:08,667 | INFO     | update_server=False
[2025-10-13 09:09:51] 2025-10-13 13:09:08,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:09:51] 2025-10-13 13:09:08,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:09:51] 2025-10-13 13:09:08,712 | INFO     | all data control threads have been joined
[2025-10-13 09:09:51] 2025-10-13 13:09:08,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:09:51] 2025-10-13 13:09:09,103 | INFO     | all payload control threads have been joined
[2025-10-13 09:09:51] 2025-10-13 13:09:09,603 | INFO     | all job control threads have been joined
[2025-10-13 09:09:51] 2025-10-13 13:09:09,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:09:51] 2025-10-13 13:09:09,619 | INFO     | aborting loop
[2025-10-13 09:09:51] 2025-10-13 13:09:09,672 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:09,672 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:09,718 | INFO     | [data] control thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:09,788 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:09,863 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,108 | INFO     | [payload] control thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,459 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,459 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,521 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,608 | INFO     | [job] control thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,625 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,714 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,863 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,869 | INFO     | [job] validate thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:10,902 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:12,025 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:09:51] 2025-10-13 13:09:16,031 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:09:51] 2025-10-13 13:09:38,250 | INFO     | PID=32312 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 09:09:51] 2025-10-13 13:09:38,250 | INFO     | .. there are 2 such processes running
[2025-10-13 09:09:51] 2025-10-13 13:09:38,250 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:09:51] 2025-10-13 13:09:38,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:09:51] 2025-10-13 13:09:38,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:09:51] 2025-10-13 13:09:44,716 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:09:51] 2025-10-13 13:09:45,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686933862208)>', '<ExcThread(monitor, started 139686211213056)>']
[2025-10-13 09:09:51] 2025-10-13 13:09:46,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:09:51] 2025-10-13 13:09:46,291 | INFO     | [monitor] control thread has ended
[2025-10-13 09:09:51] 2025-10-13 13:09:50,847 | INFO     | all workflow threads have been joined
[2025-10-13 09:09:51] 2025-10-13 13:09:50,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:09:51] 2025-10-13 13:09:50,892 | INFO     | traces error code: 0
[2025-10-13 09:09:51] 2025-10-13 13:09:50,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:09:51] 2025-10-13 13:09:50,979 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:09:51] 2025-10-13 13:09:50,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:09:51] 2025-10-13 13:09:50,984 [wrapper] pilotpid: 32312
[2025-10-13 09:09:51] 2025-10-13 13:09:50,986 [wrapper] Pilot exit status: 0
[2025-10-13 09:09:51] 2025-10-13 13:09:50,994 [wrapper] pandaids: 6842733988
[2025-10-13 09:09:51] 2025-10-13 13:09:51,022 [wrapper] cleanup supervisor_pilot 16560 32313
[2025-10-13 09:09:51] 2025-10-13 13:09:51,024 [wrapper] Test setup, not cleaning
[2025-10-13 09:09:51] 2025-10-13 13:09:51,027 [wrapper] apfmon messages muted
[2025-10-13 09:09:51] 2025-10-13 13:09:51,029 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:09:51] 2025-10-13 13:09:51,030 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:09:51]  *** Error codes and diagnostics ***
[2025-10-13 09:09:51]     "exeErrorCode": 0,
[2025-10-13 09:09:51]     "exeErrorDiag": "",
[2025-10-13 09:09:51]     "pilotErrorCode": 0,
[2025-10-13 09:09:51]     "pilotErrorDiag": "",
[2025-10-13 09:09:51]  *** Listing of results directory ***
[2025-10-13 09:09:51] total 408768
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 04:38 pilot3.tar.gz
[2025-10-13 09:09:51] -rwx------ 1 boincer umatlas     36292 Oct 13 04:42 runpilot2-wrapper.sh
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 04:42 queuedata.json
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas       100 Oct 13 06:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:09:51] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 06:19 run_atlas
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas       105 Oct 13 06:19 job.xml
[2025-10-13 09:09:51] -rw-r--r-- 2 boincer umatlas 217692206 Oct 13 06:19 EVNT.46676267._004823.pool.root.1
[2025-10-13 09:09:51] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 06:19 start_atlas.sh
[2025-10-13 09:09:51] drwxrwx--x 2 boincer umatlas      4096 Oct 13 06:19 shared
[2025-10-13 09:09:51] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 06:19 input.tar.gz
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas         0 Oct 13 06:19 boinc_lockfile
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 06:19 pandaJob.out
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas    972497 Oct 13 06:19 agis_schedconf.cvmfs.json
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas   1560580 Oct 13 06:19 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:09:51] drwx------ 5 boincer umatlas      4096 Oct 13 06:19 pilot3
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas      5952 Oct 13 09:01 init_data.xml
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas 193314768 Oct 13 09:08 HITS.46676269._096519.pool.root.1
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas      1057 Oct 13 09:08 memory_monitor_summary.json
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas    398697 Oct 13 09:08 log.46676269._096519.job.log.tgz.1
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas       531 Oct 13 09:08 boinc_task_state.xml
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas      7868 Oct 13 09:09 heartbeat.json
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas        95 Oct 13 09:09 pilot_heartbeat.json
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas        28 Oct 13 09:09 wrapper_checkpoint.txt
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 09:09 boinc_mmap_file
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas      4821 Oct 13 09:09 pilotlog.txt
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas   1433888 Oct 13 09:09 log.46676269._096519.job.log.1
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas       357 Oct 13 09:09 output.list
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas       620 Oct 13 09:09 runtime_log
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas   1853440 Oct 13 09:09 result.tar.gz
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas      8704 Oct 13 09:09 runtime_log.err
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas       661 Oct 13 09:09 Kp7KDmPJTS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmhiVMDmFU8FPo.diag
[2025-10-13 09:09:51] -rw-r--r-- 1 boincer umatlas     20846 Oct 13 09:09 stderr.txt
[2025-10-13 09:09:51] HITS file was successfully produced:
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas 193314768 Oct 13 09:08 shared/HITS.pool.root.1
[2025-10-13 09:09:51]  *** Contents of shared directory: ***
[2025-10-13 09:09:51] total 403772
[2025-10-13 09:09:51] -rw-r--r-- 2 boincer umatlas 217692206 Oct 13 06:19 ATLAS.root_0
[2025-10-13 09:09:51] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 06:19 start_atlas.sh
[2025-10-13 09:09:51] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 06:19 input.tar.gz
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas 193314768 Oct 13 09:08 HITS.pool.root.1
[2025-10-13 09:09:51] -rw------- 1 boincer umatlas   1853440 Oct 13 09:09 result.tar.gz
09:09:52 (28339): run_atlas exited; CPU time 77446.209246
09:09:52 (28339): called boinc_finish(0)

</stderr_txt>
]]>

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