Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:22:11 (664550): wrapper (7.7.26015): starting
07:22:11 (664550): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 07:22:11] Arguments: --nthreads 9
[2025-10-13 07:22:11] Threads: 9
[2025-10-13 07:22:11] Checking for CVMFS
[2025-10-13 07:22:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:22:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:22:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:22:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:22:12] 2.13.2.0 5391 5580 86512 151660 3 65 18450321 40960000 11538 16776704 0 9291161 99.884 3216618 32051 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 07:22:12] CVMFS is ok
[2025-10-13 07:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:22:12] Further information can be found at the LHC@home message board.
[2025-10-13 07:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:22:12] Checking for apptainer binary...
[2025-10-13 07:22:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:22:12] Running /usr/bin/apptainer --version
[2025-10-13 07:22:12] apptainer version 1.4.3-1.el9
[2025-10-13 07:22:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:22:12] c-210-35-4.aglt2.org
[2025-10-13 07:22:12] apptainer works
[2025-10-13 07:22:12] Set ATHENA_PROC_NUMBER=9
[2025-10-13 07:22:12] Set ATHENA_CORE_NUMBER=9
[2025-10-13 07:22:12] Starting ATLAS job with PandaID=6842781123
[2025-10-13 07:22:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:58:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:58:44] 2025-10-13 12:57:26,427 | INFO     | adding to output.list: log.46676269._096587.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/ae/log.46676269._096587.job.log.tg
[2025-10-13 08:58:44] 2025-10-13 12:57:26,428 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:58:44] 2025-10-13 12:57:26,428 | INFO     | summary of transferred files:
[2025-10-13 08:58:44] 2025-10-13 12:57:26,429 | INFO     |  -- lfn=log.46676269._096587.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:58:44] 2025-10-13 12:57:26,429 | INFO     | stage-out finished correctly
[2025-10-13 08:58:44] 2025-10-13 12:57:27,307 | WARNING  | process 677188 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 08:58:44] 2025-10-13 12:57:27,308 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6842781123/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:58:44] 2025-10-13 12:57:27,384 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:58:44] 2025-10-13 12:57:27,676 | INFO     | time since job start (5698s) is within the limit (172800.0s)
[2025-10-13 08:58:44] 2025-10-13 12:57:28,064 | INFO     | number of running child processes to parent process 677188: 1
[2025-10-13 08:58:44] 2025-10-13 12:57:28,068 | INFO     | maximum number of monitored processes: 6
[2025-10-13 08:58:44] 2025-10-13 12:57:29,687 | INFO     | job 6842781123 has state=finished
[2025-10-13 08:58:44] 2025-10-13 12:57:29,687 | INFO     | preparing for final server update for job 6842781123 in state='finished'
[2025-10-13 08:58:44] 2025-10-13 12:57:29,688 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:58:44] 2025-10-13 12:57:29,688 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:58:44] 2025-10-13 12:57:29,688 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:58:44] 2025-10-13 12:57:29,688 | INFO     | job 6842781123 has finished - writing final server update
[2025-10-13 08:58:44] 2025-10-13 12:57:29,688 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:58:44] 2025-10-13 12:57:29,689 | INFO     | executing command: lscpu
[2025-10-13 08:58:44] 2025-10-13 12:57:29,699 | INFO     | time since job start (5700s) is within the limit (172800.0s)
[2025-10-13 08:58:44] 2025-10-13 12:57:29,752 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:58:44] 2025-10-13 12:57:30,573 | INFO     | monitor loop #407: job 0:6842781123 is in state 'finished'
[2025-10-13 08:58:44] 2025-10-13 12:57:30,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:58:44] 2025-10-13 12:57:31,729 | INFO     | time since job start (5702s) is within the limit (172800.0s)
[2025-10-13 08:58:44] 2025-10-13 12:57:33,088 | INFO     | monitor loop #408: job 0:6842781123 is in state 'finished'
[2025-10-13 08:58:44] 2025-10-13 12:57:33,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:58:44] 2025-10-13 12:57:33,735 | INFO     | time since job start (5704s) is within the limit (172800.0s)
[2025-10-13 08:58:44] 2025-10-13 12:57:33,735 | INFO     | 5707s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 08:58:44] 2025-10-13 12:57:35,080 | INFO     | PID=669021 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 08:58:44] 2025-10-13 12:57:35,081 | INFO     | .. there are 9 such processes running
[2025-10-13 08:58:44] 2025-10-13 12:57:35,593 | INFO     | monitor loop #409: job 0:6842781123 is in state 'finished'
[2025-10-13 08:58:44] 2025-10-13 12:57:35,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:58:44] 2025-10-13 12:57:36,083 | INFO     | time since job start (5707s) is within the limit (172800.0s)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,090 | INFO     | time since job start (5709s) is within the limit (172800.0s)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,098 | INFO     | monitor loop #410: job 0:6842781123 is in state 'finished'
[2025-10-13 08:58:44] 2025-10-13 12:57:38,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,354 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 08:58:44] 2025-10-13 12:57:38,361 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2748.3332678571433
[2025-10-13 08:58:44] 2025-10-13 12:57:38,369 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6842781123/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,370 | INFO     | extracted standard info from prmon json
[2025-10-13 08:58:44] 2025-10-13 12:57:38,370 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:58:44] 2025-10-13 12:57:38,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:58:44] 2025-10-13 12:57:38,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:58:44] 2025-10-13 12:57:38,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:58:44] 2025-10-13 12:57:38,372 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | sum of square deviations: 197222918.93023226
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | sum of deviations: -20487896182.813946
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | mean x: 1760357480.5813954
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | mean y: 2801301.61627907
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | -- intersect: 182872122486.08734
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | intersect: 182872122486.08734
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | chi2: 0.17470871669354937
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | -- intersect: 182872122486.08734
[2025-10-13 08:58:44] 2025-10-13 12:57:38,373 | INFO     | current memory leak: -103.88 B/s (using 86 data points, chi2=0.17)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | could have reported an average CPU frequency of 2788 MHz (7 samples)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | ..............................
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . Timing measurements:
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . get job = 0 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . initial setup = 3 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . payload setup = 7 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . stage-in = 0 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . payload execution = 5666 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . stage-out = 1 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | . log creation = 0 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,374 | INFO     | ..............................
[2025-10-13 08:58:44] 2025-10-13 12:57:38,460 | INFO     | 
[2025-10-13 08:58:44] 2025-10-13 12:57:38,460 | INFO     | job summary report
[2025-10-13 08:58:44] 2025-10-13 12:57:38,460 | INFO     | --------------------------------------------------
[2025-10-13 08:58:44] 2025-10-13 12:57:38,460 | INFO     | PanDA job id: 6842781123
[2025-10-13 08:58:44] 2025-10-13 12:57:38,460 | INFO     | task id: 46676269
[2025-10-13 08:58:44] 2025-10-13 12:57:38,460 | INFO     | errors: (none)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | pilot state: finished 
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | transexitcode: 0
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | exeerrorcode: 0
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | exeerrordiag: 
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | exitcode: 0
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | exitmsg: OK
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | cpuconsumptiontime: 37663 s
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | nevents: 400
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | neventsw: 0
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | pid: 677188
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | pgrp: 677188
[2025-10-13 08:58:44] 2025-10-13 12:57:38,461 | INFO     | corecount: 9
[2025-10-13 08:58:44] 2025-10-13 12:57:38,462 | INFO     | event service: False
[2025-10-13 08:58:44] 2025-10-13 12:57:38,462 | INFO     | sizes: {0: 2348585, 1: 2348784, 7: 2349046, 12: 2349074, 5678: 2375633, 5679: 2384631, 5681: 2384815, 5691: 2385009}
[2025-10-13 08:58:44] 2025-10-13 12:57:38,462 | INFO     | --------------------------------------------------
[2025-10-13 08:58:44] 2025-10-13 12:57:38,462 | INFO     | 
[2025-10-13 08:58:44] 2025-10-13 12:57:38,462 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-13 08:58:44] 2025-10-13 12:57:38,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:58:44] 2025-10-13 12:57:38,484 | INFO     | job 6842781123 has completed (purged errors)
[2025-10-13 08:58:44] 2025-10-13 12:57:38,484 | INFO     | overall cleanup function is called
[2025-10-13 08:58:44] 2025-10-13 12:57:39,493 | INFO     | --- collectZombieJob: --- 10, [677188]
[2025-10-13 08:58:44] 2025-10-13 12:57:39,493 | INFO     | zombie collector waiting for pid 677188
[2025-10-13 08:58:44] 2025-10-13 12:57:39,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:58:44] 2025-10-13 12:57:39,493 | INFO     | collected zombie processes
[2025-10-13 08:58:44] 2025-10-13 12:57:39,494 | INFO     | will attempt to kill all subprocesses of pid=677188
[2025-10-13 08:58:44] 2025-10-13 12:57:39,898 | INFO     | process IDs to be killed: [677188] (in reverse order)
[2025-10-13 08:58:44] 2025-10-13 12:57:40,070 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:58:44] 2025-10-13 12:57:40,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:58:44] 2025-10-13 12:57:40,101 | INFO     | did not find any defunct processes belonging to 677188
[2025-10-13 08:58:44] 2025-10-13 12:57:40,113 | INFO     | did not find any defunct processes belonging to 677188
[2025-10-13 08:58:44] 2025-10-13 12:57:40,113 | INFO     | ready for new job
[2025-10-13 08:58:44] 2025-10-13 12:57:40,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:58:44] 2025-10-13 12:57:40,115 | INFO     | ***************************************
[2025-10-13 08:58:44] 2025-10-13 12:57:40,115 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:58:44] 2025-10-13 12:57:40,115 | INFO     | ***************************************
[2025-10-13 08:58:44] 2025-10-13 12:57:40,115 | INFO     | 
[2025-10-13 08:58:44] 2025-10-13 12:57:40,118 | INFO     | architecture information:
[2025-10-13 08:58:44] 2025-10-13 12:57:40,119 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:58:44] 2025-10-13 12:57:40,139 | INFO     | cat /etc/os-release:
[2025-10-13 08:58:44] NAME="CentOS Linux"
[2025-10-13 08:58:44] VERSION="7 (Core)"
[2025-10-13 08:58:44] ID="centos"
[2025-10-13 08:58:44] ID_LIKE="rhel fedora"
[2025-10-13 08:58:44] VERSION_ID="7"
[2025-10-13 08:58:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:58:44] ANSI_COLOR="0;31"
[2025-10-13 08:58:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:58:44] HOME_URL="https://www.centos.org/"
[2025-10-13 08:58:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:58:44] 
[2025-10-13 08:58:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:58:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:58:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:58:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:58:44] 
[2025-10-13 08:58:44] 2025-10-13 12:57:40,140 | INFO     | ***************************************
[2025-10-13 08:58:44] 2025-10-13 12:57:40,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-13 08:58:44] 2025-10-13 12:57:40,706 | INFO     | sufficient remaining disk space (74946969600 B)
[2025-10-13 08:58:44] 2025-10-13 12:57:40,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:58:44] 2025-10-13 12:57:40,707 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:58:44] 2025-10-13 12:57:40,707 | INFO     | update_server=False
[2025-10-13 08:58:44] 2025-10-13 12:57:40,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:58:44] 2025-10-13 12:57:40,832 | INFO     | all data control threads have been joined
[2025-10-13 08:58:44] 2025-10-13 12:57:40,850 | INFO     | all job control threads have been joined
[2025-10-13 08:58:44] 2025-10-13 12:57:41,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:58:44] 2025-10-13 12:57:41,613 | INFO     | aborting loop
[2025-10-13 08:58:44] 2025-10-13 12:57:41,624 | INFO     | all payload control threads have been joined
[2025-10-13 08:58:44] 2025-10-13 12:57:41,726 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:41,838 | INFO     | [data] control thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:41,856 | INFO     | [job] control thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:41,882 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:41,964 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,123 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:58:44] 2025-10-13 12:57:42,231 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,467 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,619 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,632 | INFO     | [payload] control thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:58:44] 2025-10-13 12:57:42,720 | INFO     | [job] validate thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,721 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:42,975 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:43,204 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:43,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:58:44] 2025-10-13 12:57:44,130 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:44,480 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:57:46,669 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:58:44] 2025-10-13 12:58:11,667 | INFO     | PID=669021 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 08:58:44] 2025-10-13 12:58:11,667 | INFO     | .. there are 9 such processes running
[2025-10-13 08:58:44] 2025-10-13 12:58:11,667 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:58:44] 2025-10-13 12:58:11,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:58:44] 2025-10-13 12:58:11,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:58:44] 2025-10-13 12:58:38,467 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:58:44] 2025-10-13 12:58:39,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310051915584)>', '<ExcThread(monitor, started 140309686097664)>']
[2025-10-13 08:58:44] 2025-10-13 12:58:39,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:58:44] 2025-10-13 12:58:39,845 | INFO     | [monitor] control thread has ended
[2025-10-13 08:58:44] 2025-10-13 12:58:44,095 | INFO     | all workflow threads have been joined
[2025-10-13 08:58:44] 2025-10-13 12:58:44,095 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:58:44] 2025-10-13 12:58:44,095 | INFO     | traces error code: 0
[2025-10-13 08:58:44] 2025-10-13 12:58:44,096 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:58:44] 2025-10-13 12:58:44,267 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:58:44] 2025-10-13 12:58:44,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:58:44] 2025-10-13 12:58:44,273 [wrapper] pilotpid: 669021
[2025-10-13 08:58:44] 2025-10-13 12:58:44,276 [wrapper] Pilot exit status: 0
[2025-10-13 08:58:44] 2025-10-13 12:58:44,330 [wrapper] pandaids: 6842781123
[2025-10-13 08:58:44] 2025-10-13 12:58:44,411 [wrapper] cleanup supervisor_pilot  772751 669022
[2025-10-13 08:58:44] 2025-10-13 12:58:44,418 [wrapper] Test setup, not cleaning
[2025-10-13 08:58:44] 2025-10-13 12:58:44,423 [wrapper] apfmon messages muted
[2025-10-13 08:58:44] 2025-10-13 12:58:44,427 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:58:44] 2025-10-13 12:58:44,432 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:58:44]  *** Error codes and diagnostics ***
[2025-10-13 08:58:44]     "exeErrorCode": 0,
[2025-10-13 08:58:44]     "exeErrorDiag": "",
[2025-10-13 08:58:44]     "pilotErrorCode": 0,
[2025-10-13 08:58:44]     "pilotErrorDiag": "",
[2025-10-13 08:58:44]  *** Listing of results directory ***
[2025-10-13 08:58:44] total 410432
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas    557409 Oct 13 05:31 pilot3.tar.gz
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas      5112 Oct 13 05:42 queuedata.json
[2025-10-13 08:58:44] -rwx------. 1 boincer umatlas     36292 Oct 13 05:42 runpilot2-wrapper.sh
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas       100 Oct 13 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:58:44] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 07:22 run_atlas
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas       105 Oct 13 07:22 job.xml
[2025-10-13 08:58:44] -rw-r--r--. 2 boincer umatlas 219355372 Oct 13 07:22 EVNT.46676267._001314.pool.root.1
[2025-10-13 08:58:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 07:22 start_atlas.sh
[2025-10-13 08:58:44] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 07:22 shared
[2025-10-13 08:58:44] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 07:22 input.tar.gz
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas         0 Oct 13 07:22 boinc_lockfile
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 07:22 pandaJob.out
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas    972497 Oct 13 07:22 agis_schedconf.cvmfs.json
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas   1560580 Oct 13 07:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:58:44] drwx------. 5 boincer umatlas      4096 Oct 13 07:22 pilot3
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas       529 Oct 13 08:56 boinc_task_state.xml
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas 194647658 Oct 13 08:56 HITS.46676269._096587.pool.root.1
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas        95 Oct 13 08:57 pilot_heartbeat.json
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas      1033 Oct 13 08:57 memory_monitor_summary.json
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas    372419 Oct 13 08:57 log.46676269._096587.job.log.tgz.1
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas      7823 Oct 13 08:57 heartbeat.json
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas      6839 Oct 13 08:57 init_data.xml
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 08:58 boinc_mmap_file
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas        27 Oct 13 08:58 wrapper_checkpoint.txt
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas      4822 Oct 13 08:58 pilotlog.txt
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas    815764 Oct 13 08:58 log.46676269._096587.job.log.1
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas       357 Oct 13 08:58 output.list
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas       620 Oct 13 08:58 runtime_log
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas   1208320 Oct 13 08:58 result.tar.gz
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas      8713 Oct 13 08:58 runtime_log.err
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas       654 Oct 13 08:58 qjUMDm6FUS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSkmNDmtC3Yzn.diag
[2025-10-13 08:58:44] -rw-r--r--. 1 boincer umatlas     22396 Oct 13 08:58 stderr.txt
[2025-10-13 08:58:44] HITS file was successfully produced:
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas 194647658 Oct 13 08:56 shared/HITS.pool.root.1
[2025-10-13 08:58:44]  *** Contents of shared directory: ***
[2025-10-13 08:58:44] total 406068
[2025-10-13 08:58:44] -rw-r--r--. 2 boincer umatlas 219355372 Oct 13 07:22 ATLAS.root_0
[2025-10-13 08:58:44] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 07:22 start_atlas.sh
[2025-10-13 08:58:44] -rw-r--r--. 2 boincer umatlas    569683 Oct 13 07:22 input.tar.gz
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas 194647658 Oct 13 08:56 HITS.pool.root.1
[2025-10-13 08:58:44] -rw-------. 1 boincer umatlas   1208320 Oct 13 08:58 result.tar.gz
08:58:45 (664550): run_atlas exited; CPU time 37714.875525
08:58:45 (664550): called boinc_finish(0)

</stderr_txt>
]]>

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