Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:10:47 (3588296): wrapper (7.7.26015): starting
22:10:47 (3588296): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 22:10:47] Arguments: --nthreads 3
[2025-10-13 22:10:47] Threads: 3
[2025-10-13 22:10:47] Checking for CVMFS
[2025-10-13 22:10:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 22:10:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 22:10:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 22:10:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 22:10:47] 2.9.2.0 3205981 1330 62104 151671 1 57 30813559 36864001 0 130560 0 989395 99.991 44010 746 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 22:10:47] CVMFS is ok
[2025-10-13 22:10:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 22:10:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 22:10:48] Further information can be found at the LHC@home message board.
[2025-10-13 22:10:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 22:10:48] Checking for apptainer binary...
[2025-10-13 22:10:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 22:10:48] Running /usr/bin/apptainer --version
[2025-10-13 22:10:48] apptainer version 1.4.1-1.1
[2025-10-13 22:10:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 22:10:48] thA335
[2025-10-13 22:10:48] apptainer works
[2025-10-13 22:10:48] Set ATHENA_PROC_NUMBER=3
[2025-10-13 22:10:48] Set ATHENA_CORE_NUMBER=3
[2025-10-13 22:10:48] Starting ATLAS job with PandaID=6840969749
[2025-10-13 22:10:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 23:46:13]  *** The last 200 lines of the pilot log: ***
[2025-10-13 23:46:13] 2025-10-13 21:45:28,739 | INFO     | job 6840969749 has completed (purged errors)
[2025-10-13 23:46:13] 2025-10-13 21:45:28,739 | INFO     | overall cleanup function is called
[2025-10-13 23:46:13] 2025-10-13 21:45:29,745 | INFO     | --- collectZombieJob: --- 10, [3598462]
[2025-10-13 23:46:13] 2025-10-13 21:45:29,745 | INFO     | zombie collector waiting for pid 3598462
[2025-10-13 23:46:13] 2025-10-13 21:45:29,746 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 23:46:13] 2025-10-13 21:45:29,746 | INFO     | collected zombie processes
[2025-10-13 23:46:13] 2025-10-13 21:45:29,746 | INFO     | will attempt to kill all subprocesses of pid=3598462
[2025-10-13 23:46:13] 2025-10-13 21:45:29,787 | INFO     | process IDs to be killed: [3598462] (in reverse order)
[2025-10-13 23:46:13] 2025-10-13 21:45:29,814 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 23:46:13] 2025-10-13 21:45:29,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 23:46:13] 2025-10-13 21:45:29,815 | INFO     | did not find any defunct processes belonging to 3598462
[2025-10-13 23:46:13] 2025-10-13 21:45:29,816 | INFO     | did not find any defunct processes belonging to 3598462
[2025-10-13 23:46:13] 2025-10-13 21:45:29,816 | INFO     | ready for new job
[2025-10-13 23:46:13] 2025-10-13 21:45:29,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 23:46:13] 2025-10-13 21:45:29,816 | INFO     | ***************************************
[2025-10-13 23:46:13] 2025-10-13 21:45:29,816 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 23:46:13] 2025-10-13 21:45:29,816 | INFO     | ***************************************
[2025-10-13 23:46:13] 2025-10-13 21:45:29,817 | INFO     | 
[2025-10-13 23:46:13] 2025-10-13 21:45:29,817 | INFO     | architecture information:
[2025-10-13 23:46:13] 2025-10-13 21:45:29,817 | INFO     | executing command: cat /etc/os-release
[2025-10-13 23:46:13] 2025-10-13 21:45:29,827 | INFO     | cat /etc/os-release:
[2025-10-13 23:46:13] NAME="CentOS Linux"
[2025-10-13 23:46:13] VERSION="7 (Core)"
[2025-10-13 23:46:13] ID="centos"
[2025-10-13 23:46:13] ID_LIKE="rhel fedora"
[2025-10-13 23:46:13] VERSION_ID="7"
[2025-10-13 23:46:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 23:46:13] ANSI_COLOR="0;31"
[2025-10-13 23:46:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 23:46:13] HOME_URL="https://www.centos.org/"
[2025-10-13 23:46:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 23:46:13] 
[2025-10-13 23:46:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 23:46:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 23:46:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 23:46:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 23:46:13] 
[2025-10-13 23:46:13] 2025-10-13 21:45:29,827 | INFO     | ***************************************
[2025-10-13 23:46:13] 2025-10-13 21:45:30,330 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 23:46:13] 2025-10-13 21:45:30,343 | INFO     | sufficient remaining disk space (832323977216 B)
[2025-10-13 23:46:13] 2025-10-13 21:45:30,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 23:46:13] 2025-10-13 21:45:30,344 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 23:46:13] 2025-10-13 21:45:30,344 | INFO     | update_server=False
[2025-10-13 23:46:13] 2025-10-13 21:45:30,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 23:46:13] 2025-10-13 21:45:30,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:46:13] 2025-10-13 21:45:30,462 | INFO     | all data control threads have been joined
[2025-10-13 23:46:13] 2025-10-13 21:45:30,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:46:13] 2025-10-13 21:45:30,675 | INFO     | aborting loop
[2025-10-13 23:46:13] 2025-10-13 21:45:30,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 23:46:13] 2025-10-13 21:45:31,347 | INFO     | all job control threads have been joined
[2025-10-13 23:46:13] 2025-10-13 21:45:31,350 | INFO     | [job] retrieve thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,350 | INFO     | [job] queue monitor thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,468 | INFO     | [data] control thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,549 | INFO     | all payload control threads have been joined
[2025-10-13 23:46:13] 2025-10-13 21:45:31,638 | INFO     | [data] copytool_in thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,681 | INFO     | [job] job monitor thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,912 | INFO     | [payload] validate_post thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:31,965 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,091 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,101 | INFO     | [job] validate thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,352 | INFO     | [job] control thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,555 | INFO     | [payload] control thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,567 | INFO     | [payload] failed_post thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,710 | INFO     | [data] copytool_out thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:32,785 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:33,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 23:46:13] 2025-10-13 21:45:37,239 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 23:46:13] 2025-10-13 21:45:59,023 | INFO     | 5669s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 23:46:13] 2025-10-13 21:46:00,083 | INFO     | PID=3592016 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 23:46:13] 2025-10-13 21:46:00,083 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 23:46:13] 2025-10-13 21:46:00,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 23:46:13] 2025-10-13 21:46:00,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 23:46:13] 2025-10-13 21:46:07,201 | INFO     | [monitor] cgroup control has ended
[2025-10-13 23:46:13] 2025-10-13 21:46:07,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169177691968)>', '<ExcThread(monitor, started 140168455509760)>']
[2025-10-13 23:46:13] 2025-10-13 21:46:08,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 23:46:13] 2025-10-13 21:46:08,126 | INFO     | [monitor] control thread has ended
[2025-10-13 23:46:13] 2025-10-13 21:46:12,460 | INFO     | all workflow threads have been joined
[2025-10-13 23:46:13] 2025-10-13 21:46:12,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 23:46:13] 2025-10-13 21:46:12,461 | INFO     | traces error code: 0
[2025-10-13 23:46:13] 2025-10-13 21:46:12,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 23:46:13] 2025-10-13 21:46:12,520 [wrapper] ==== pilot stdout END ====
[2025-10-13 23:46:13] 2025-10-13 21:46:12,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 23:46:13] 2025-10-13 21:46:12,526 [wrapper] pilotpid: 3592016
[2025-10-13 23:46:13] 2025-10-13 21:46:12,529 [wrapper] Pilot exit status: 0
[2025-10-13 23:46:13] 2025-10-13 21:46:12,536 [wrapper] pandaids: 6840969749
[2025-10-13 23:46:13] 2025-10-13 21:46:12,553 [wrapper] cleanup supervisor_pilot 3611021 3592017
[2025-10-13 23:46:13] 2025-10-13 21:46:12,556 [wrapper] Test setup, not cleaning
[2025-10-13 23:46:13] 2025-10-13 21:46:12,559 [wrapper] apfmon messages muted
[2025-10-13 23:46:13] 2025-10-13 21:46:12,562 [wrapper] ==== wrapper stdout END ====
[2025-10-13 23:46:13] 2025-10-13 21:46:12,565 [wrapper] ==== wrapper stderr END ====
[2025-10-13 23:46:13]  *** Error codes and diagnostics ***
[2025-10-13 23:46:13]     "exeErrorCode": 0,
[2025-10-13 23:46:13]     "exeErrorDiag": "",
[2025-10-13 23:46:13]     "pilotErrorCode": 0,
[2025-10-13 23:46:13]     "pilotErrorDiag": "",
[2025-10-13 23:46:13]  *** Listing of results directory ***
[2025-10-13 23:46:13] total 413012
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc    557409 Oct 13 01:11 pilot3.tar.gz
[2025-10-13 23:46:13] -rwx------ 1 boinc boinc     36292 Oct 13 01:45 runpilot2-wrapper.sh
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc      5112 Oct 13 01:45 queuedata.json
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc       100 Oct 13 22:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 23:46:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 22:10 run_atlas
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc       105 Oct 13 22:10 job.xml
[2025-10-13 23:46:13] -rw-r--r-- 2 boinc boinc 219891211 Oct 13 22:10 EVNT.46676267._004666.pool.root.1
[2025-10-13 23:46:13] -rw-r--r-- 2 boinc boinc    569677 Oct 13 22:10 input.tar.gz
[2025-10-13 23:46:13] -rw-r--r-- 2 boinc boinc     15120 Oct 13 22:10 start_atlas.sh
[2025-10-13 23:46:13] drwxrwx--x 2 boinc boinc      4096 Oct 13 22:10 shared
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc         0 Oct 13 22:10 boinc_setup_complete
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc      6195 Oct 13 22:10 init_data.xml
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc         0 Oct 13 22:10 boinc_lockfile
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc      2550 Oct 13 22:10 pandaJob.out
[2025-10-13 23:46:13] -rw------- 1 boinc boinc    972799 Oct 13 22:10 agis_schedconf.cvmfs.json
[2025-10-13 23:46:13] -rw------- 1 boinc boinc   1560580 Oct 13 22:10 agis_ddmendpoints.agis.ALL.json
[2025-10-13 23:46:13] drwx------ 5 boinc boinc      4096 Oct 13 22:11 pilot3
[2025-10-13 23:46:13] -rw------- 1 boinc boinc 196948810 Oct 13 23:45 HITS.46676269._092433.pool.root.1
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc       529 Oct 13 23:45 boinc_task_state.xml
[2025-10-13 23:46:13] -rw------- 1 boinc boinc      1028 Oct 13 23:45 memory_monitor_summary.json
[2025-10-13 23:46:13] -rw------- 1 boinc boinc    268275 Oct 13 23:45 log.46676269._092433.job.log.tgz.1
[2025-10-13 23:46:13] -rw------- 1 boinc boinc        95 Oct 13 23:45 pilot_heartbeat.json
[2025-10-13 23:46:13] -rw------- 1 boinc boinc      7750 Oct 13 23:45 heartbeat.json
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc        27 Oct 13 23:45 wrapper_checkpoint.txt
[2025-10-13 23:46:13] -rw------- 1 boinc boinc      4867 Oct 13 23:46 pilotlog.txt
[2025-10-13 23:46:13] -rw------- 1 boinc boinc    827221 Oct 13 23:46 log.46676269._092433.job.log.1
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc      8192 Oct 13 23:46 boinc_mmap_file
[2025-10-13 23:46:13] -rw------- 1 boinc boinc       357 Oct 13 23:46 output.list
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc       620 Oct 13 23:46 runtime_log
[2025-10-13 23:46:13] -rw------- 1 boinc boinc   1116160 Oct 13 23:46 result.tar.gz
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc      8777 Oct 13 23:46 runtime_log.err
[2025-10-13 23:46:13] -rw------- 1 boinc boinc       658 Oct 13 23:46 V3jNDmqvKS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm94lNDmx0r4Gm.diag
[2025-10-13 23:46:13] -rw-r--r-- 1 boinc boinc     10946 Oct 13 23:46 stderr.txt
[2025-10-13 23:46:13] HITS file was successfully produced:
[2025-10-13 23:46:13] -rw------- 1 boinc boinc 196948810 Oct 13 23:45 shared/HITS.pool.root.1
[2025-10-13 23:46:13]  *** Contents of shared directory: ***
[2025-10-13 23:46:13] total 408752
[2025-10-13 23:46:13] -rw-r--r-- 2 boinc boinc 219891211 Oct 13 22:10 ATLAS.root_0
[2025-10-13 23:46:13] -rw-r--r-- 2 boinc boinc    569677 Oct 13 22:10 input.tar.gz
[2025-10-13 23:46:13] -rw-r--r-- 2 boinc boinc     15120 Oct 13 22:10 start_atlas.sh
[2025-10-13 23:46:13] -rw------- 1 boinc boinc 196948810 Oct 13 23:45 HITS.pool.root.1
[2025-10-13 23:46:13] -rw------- 1 boinc boinc   1116160 Oct 13 23:46 result.tar.gz
23:46:35 (3588296): run_atlas exited; CPU time 16292.309480
23:46:35 (3588296): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN