Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:16:02 (3287788): wrapper (7.7.26015): starting
06:16:02 (3287788): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 06:16:02] Arguments: --nthreads 12
[2025-10-13 06:16:02] Threads: 12
[2025-10-13 06:16:02] Checking for CVMFS
[2025-10-13 06:16:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:16:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:16:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:16:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:16:03] 2.13.2.0 3683012 14095 147348 151658 1 188 38540298 40960000 4768 16776704 0 164220071 99.875 55118675 32598 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 06:16:03] CVMFS is ok
[2025-10-13 06:16:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:16:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:16:03] Further information can be found at the LHC@home message board.
[2025-10-13 06:16:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:16:03] Checking for apptainer binary...
[2025-10-13 06:16:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:16:03] Running /usr/bin/apptainer --version
[2025-10-13 06:16:03] apptainer version 1.4.3-1.el9
[2025-10-13 06:16:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:16:03] c8-7-4.aglt2.org
[2025-10-13 06:16:03] apptainer works
[2025-10-13 06:16:03] Set ATHENA_PROC_NUMBER=12
[2025-10-13 06:16:03] Set ATHENA_CORE_NUMBER=12
[2025-10-13 06:16:03] Starting ATLAS job with PandaID=6842724004
[2025-10-13 06:16:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:42:26]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:42:26]  replicas=None
[2025-10-13 06:42:26]  scope=mc23_13p6TeV
[2025-10-13 06:42:26]  status=None
[2025-10-13 06:42:26]  status_code=0
[2025-10-13 06:42:26]  storage_token=
[2025-10-13 06:42:26]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6842724004/log.46676269._096489.job.log.tgz.1
[2025-10-13 06:42:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/e6/log.46676269._096489.job.log.tgz.1
[2025-10-13 06:42:26]  workdir=None
[2025-10-13 06:42:26] ]
[2025-10-13 06:42:26] 2025-10-13 10:41:48,479 | INFO     | transferring file log.46676269._096489.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6842724004/log.46676269._096489.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 06:42:26] 2025-10-13 10:41:48,479 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6842724004/log.46676269._096489.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._096489.job
[2025-10-13 06:42:26] 2025-10-13 10:41:48,492 | INFO     | adding to output.list: log.46676269._096489.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/e6/log.46676269._096489.job.log.tg
[2025-10-13 06:42:26] 2025-10-13 10:41:48,492 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:42:26] 2025-10-13 10:41:48,492 | INFO     | summary of transferred files:
[2025-10-13 06:42:26] 2025-10-13 10:41:48,492 | INFO     |  -- lfn=log.46676269._096489.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:42:26] 2025-10-13 10:41:48,492 | INFO     | stage-out finished correctly
[2025-10-13 06:42:26] 2025-10-13 10:41:48,521 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:42:26] 2025-10-13 10:41:48,670 | INFO     | time since job start (1538s) is within the limit (172800.0s)
[2025-10-13 06:42:26] 2025-10-13 10:41:48,959 | WARNING  | process 3298028 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:42:26] 2025-10-13 10:41:48,959 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6842724004/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:42:26] 2025-10-13 10:41:49,155 | INFO     | number of running child processes to parent process 3298028: 1
[2025-10-13 06:42:26] 2025-10-13 10:41:49,155 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:42:26] 2025-10-13 10:41:50,662 | INFO     | job 6842724004 has state=finished
[2025-10-13 06:42:26] 2025-10-13 10:41:50,663 | INFO     | preparing for final server update for job 6842724004 in state='finished'
[2025-10-13 06:42:26] 2025-10-13 10:41:50,663 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:42:26] 2025-10-13 10:41:50,663 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:42:26] 2025-10-13 10:41:50,663 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:42:26] 2025-10-13 10:41:50,663 | INFO     | job 6842724004 has finished - writing final server update
[2025-10-13 06:42:26] 2025-10-13 10:41:50,663 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:42:26] 2025-10-13 10:41:50,664 | INFO     | executing command: lscpu
[2025-10-13 06:42:26] 2025-10-13 10:41:50,675 | INFO     | time since job start (1540s) is within the limit (172800.0s)
[2025-10-13 06:42:26] 2025-10-13 10:41:50,715 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:42:26] 2025-10-13 10:41:51,658 | INFO     | monitor loop #118: job 0:6842724004 is in state 'finished'
[2025-10-13 06:42:26] 2025-10-13 10:41:51,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:42:26] 2025-10-13 10:41:52,681 | INFO     | time since job start (1542s) is within the limit (172800.0s)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,079 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 06:42:26] 2025-10-13 10:41:53,095 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3314.605484374992
[2025-10-13 06:42:26] 2025-10-13 10:41:53,103 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6842724004/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,104 | INFO     | extracted standard info from prmon json
[2025-10-13 06:42:26] 2025-10-13 10:41:53,104 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:42:26] 2025-10-13 10:41:53,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:42:26] 2025-10-13 10:41:53,104 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:42:26] 2025-10-13 10:41:53,104 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:42:26] 2025-10-13 10:41:53,104 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | sum of square deviations: 1802824.5
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | sum of deviations: 82044115.5
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | mean x: 1760351413.5
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | mean y: 2470619.388888889
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | -- intersect: -80108751903.81416
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | intersect: -80108751903.81416
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | chi2: 0.0008906030355799971
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | -- intersect: -80108751903.81416
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | current memory leak: 45.51 B/s (using 18 data points, chi2=0.00)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,105 | INFO     | could have reported an average CPU frequency of 3430 MHz (4 samples)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | ..............................
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . Timing measurements:
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . get job = 0 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . initial setup = 2 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . payload setup = 3 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . stage-in = 0 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . payload execution = 1516 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . stage-out = 0 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | . log creation = 0 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,106 | INFO     | ..............................
[2025-10-13 06:42:26] 2025-10-13 10:41:53,136 | INFO     | 
[2025-10-13 06:42:26] 2025-10-13 10:41:53,136 | INFO     | job summary report
[2025-10-13 06:42:26] 2025-10-13 10:41:53,136 | INFO     | --------------------------------------------------
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | PanDA job id: 6842724004
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | task id: 46676269
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | errors: (none)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | pilot state: finished 
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | transexitcode: 0
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | exeerrorcode: 0
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | exeerrordiag: 
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | exitcode: 0
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | exitmsg: OK
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | cpuconsumptiontime: 15909 s
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | nevents: 400
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | neventsw: 0
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | pid: 3298028
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | pgrp: 3298028
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | corecount: 12
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | event service: False
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | sizes: {0: 2348807, 2: 2349069, 10: 2349097, 1523: 2373905, 1525: 2382959, 1529: 2383097}
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | --------------------------------------------------
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | 
[2025-10-13 06:42:26] 2025-10-13 10:41:53,137 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:42:26] 2025-10-13 10:41:53,152 | INFO     | job 6842724004 has completed (purged errors)
[2025-10-13 06:42:26] 2025-10-13 10:41:53,152 | INFO     | overall cleanup function is called
[2025-10-13 06:42:26] 2025-10-13 10:41:54,158 | INFO     | --- collectZombieJob: --- 10, [3298028]
[2025-10-13 06:42:26] 2025-10-13 10:41:54,159 | INFO     | zombie collector waiting for pid 3298028
[2025-10-13 06:42:26] 2025-10-13 10:41:54,159 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:42:26] 2025-10-13 10:41:54,159 | INFO     | collected zombie processes
[2025-10-13 06:42:26] 2025-10-13 10:41:54,159 | INFO     | will attempt to kill all subprocesses of pid=3298028
[2025-10-13 06:42:26] 2025-10-13 10:41:54,356 | INFO     | process IDs to be killed: [3298028] (in reverse order)
[2025-10-13 06:42:26] 2025-10-13 10:41:54,438 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:42:26] 2025-10-13 10:41:54,439 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:42:26] 2025-10-13 10:41:54,448 | INFO     | did not find any defunct processes belonging to 3298028
[2025-10-13 06:42:26] 2025-10-13 10:41:54,456 | INFO     | did not find any defunct processes belonging to 3298028
[2025-10-13 06:42:26] 2025-10-13 10:41:54,456 | INFO     | ready for new job
[2025-10-13 06:42:26] 2025-10-13 10:41:54,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:42:26] 2025-10-13 10:41:54,457 | INFO     | ***************************************
[2025-10-13 06:42:26] 2025-10-13 10:41:54,457 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:42:26] 2025-10-13 10:41:54,457 | INFO     | ***************************************
[2025-10-13 06:42:26] 2025-10-13 10:41:54,457 | INFO     | 
[2025-10-13 06:42:26] 2025-10-13 10:41:54,460 | INFO     | architecture information:
[2025-10-13 06:42:26] 2025-10-13 10:41:54,460 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:42:26] 2025-10-13 10:41:54,470 | INFO     | cat /etc/os-release:
[2025-10-13 06:42:26] NAME="CentOS Linux"
[2025-10-13 06:42:26] VERSION="7 (Core)"
[2025-10-13 06:42:26] ID="centos"
[2025-10-13 06:42:26] ID_LIKE="rhel fedora"
[2025-10-13 06:42:26] VERSION_ID="7"
[2025-10-13 06:42:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:42:26] ANSI_COLOR="0;31"
[2025-10-13 06:42:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:42:26] HOME_URL="https://www.centos.org/"
[2025-10-13 06:42:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:42:26] 
[2025-10-13 06:42:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:42:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:42:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:42:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:42:26] 
[2025-10-13 06:42:26] 2025-10-13 10:41:54,470 | INFO     | ***************************************
[2025-10-13 06:42:26] 2025-10-13 10:41:54,973 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-13 06:42:26] 2025-10-13 10:41:54,984 | INFO     | sufficient remaining disk space (170316005376 B)
[2025-10-13 06:42:26] 2025-10-13 10:41:54,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:42:26] 2025-10-13 10:41:54,984 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:42:26] 2025-10-13 10:41:54,984 | INFO     | update_server=False
[2025-10-13 06:42:26] 2025-10-13 10:41:54,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:42:26] 2025-10-13 10:41:54,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:42:26] 2025-10-13 10:41:54,985 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:42:26] 2025-10-13 10:41:54,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:42:26] 2025-10-13 10:41:55,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:42:26] 2025-10-13 10:41:55,166 | INFO     | aborting loop
[2025-10-13 06:42:26] 2025-10-13 10:41:55,990 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:55,990 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,052 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,085 | INFO     | all data control threads have been joined
[2025-10-13 06:42:26] 2025-10-13 10:41:56,171 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,224 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,258 | INFO     | [job] validate thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,290 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,326 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:56,411 | INFO     | all job control threads have been joined
[2025-10-13 06:42:26] 2025-10-13 10:41:56,473 | INFO     | all payload control threads have been joined
[2025-10-13 06:42:26] 2025-10-13 10:41:56,990 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:57,022 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:57,090 | INFO     | [data] control thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:57,312 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:57,417 | INFO     | [job] control thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:57,478 | INFO     | [payload] control thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:41:58,991 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:42:05,688 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:42:26] 2025-10-13 10:42:06,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:42:26] 2025-10-13 10:42:11,534 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:42:26] 2025-10-13 10:42:13,122 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114570024768)>', '<ExcThread(monitor, started 140114063759104)>']
[2025-10-13 06:42:26] 2025-10-13 10:42:18,148 | INFO     | all workflow threads have been joined
[2025-10-13 06:42:26] 2025-10-13 10:42:18,148 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:42:26] 2025-10-13 10:42:18,148 | INFO     | traces error code: 0
[2025-10-13 06:42:26] 2025-10-13 10:42:18,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:42:26] 2025-10-13 10:42:26,012 | INFO     | PID=3291603 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:42:26] 2025-10-13 10:42:26,013 | INFO     | .. there are 4 such processes running
[2025-10-13 06:42:26] 2025-10-13 10:42:26,013 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:42:26] 2025-10-13 10:42:26,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:42:26] 2025-10-13 10:42:26,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:42:26] 2025-10-13 10:42:26,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:42:26] 2025-10-13 10:42:26,013 | INFO     | [monitor] control thread has ended
[2025-10-13 06:42:26] 2025-10-13 10:42:26,064 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:42:26] 2025-10-13 10:42:26,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:42:26] 2025-10-13 10:42:26,068 [wrapper] pilotpid: 3291603
[2025-10-13 06:42:26] 2025-10-13 10:42:26,069 [wrapper] Pilot exit status: 0
[2025-10-13 06:42:26] 2025-10-13 10:42:26,075 [wrapper] pandaids: 6842724004
[2025-10-13 06:42:26] 2025-10-13 10:42:26,133 [wrapper] cleanup supervisor_pilot 3353313 3291604
[2025-10-13 06:42:26] 2025-10-13 10:42:26,135 [wrapper] Test setup, not cleaning
[2025-10-13 06:42:26] 2025-10-13 10:42:26,136 [wrapper] apfmon messages muted
[2025-10-13 06:42:26] 2025-10-13 10:42:26,138 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:42:26] 2025-10-13 10:42:26,139 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:42:26]  *** Error codes and diagnostics ***
[2025-10-13 06:42:26]     "exeErrorCode": 0,
[2025-10-13 06:42:26]     "exeErrorDiag": "",
[2025-10-13 06:42:26]     "pilotErrorCode": 0,
[2025-10-13 06:42:26]     "pilotErrorDiag": "",
[2025-10-13 06:42:26]  *** Listing of results directory ***
[2025-10-13 06:42:26] total 406756
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas      5112 Oct 13 04:22 queuedata.json
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas    557409 Oct 13 04:22 pilot3.tar.gz
[2025-10-13 06:42:26] -rwx------. 1 boincer umatlas     36292 Oct 13 04:22 runpilot2-wrapper.sh
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas       100 Oct 13 06:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:42:26] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 06:16 run_atlas
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas       105 Oct 13 06:16 job.xml
[2025-10-13 06:42:26] -rw-r--r--. 2 boincer umatlas 218595272 Oct 13 06:16 EVNT.46676267._001434.pool.root.1
[2025-10-13 06:42:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:16 start_atlas.sh
[2025-10-13 06:42:26] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 06:16 shared
[2025-10-13 06:42:26] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 06:16 input.tar.gz
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas         0 Oct 13 06:16 boinc_lockfile
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas      2550 Oct 13 06:16 pandaJob.out
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas    972497 Oct 13 06:16 agis_schedconf.cvmfs.json
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas   1560580 Oct 13 06:16 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:42:26] drwx------. 5 boincer umatlas      4096 Oct 13 06:16 pilot3
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas      7164 Oct 13 06:39 init_data.xml
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas 192817659 Oct 13 06:41 HITS.46676269._096489.pool.root.1
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas       529 Oct 13 06:41 boinc_task_state.xml
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas        95 Oct 13 06:41 pilot_heartbeat.json
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas      1027 Oct 13 06:41 memory_monitor_summary.json
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas    341206 Oct 13 06:41 log.46676269._096489.job.log.tgz.1
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas      7765 Oct 13 06:41 heartbeat.json
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas        27 Oct 13 06:42 wrapper_checkpoint.txt
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:42 boinc_mmap_file
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas       822 Oct 13 06:42 pilotlog.txt
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas    261590 Oct 13 06:42 log.46676269._096489.job.log.1
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas       357 Oct 13 06:42 output.list
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas       620 Oct 13 06:42 runtime_log
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas    624640 Oct 13 06:42 result.tar.gz
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas      8695 Oct 13 06:42 runtime_log.err
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas       646 Oct 13 06:42 QYvLDm9zSS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQjmNDmOLfTgn.diag
[2025-10-13 06:42:26] -rw-r--r--. 1 boincer umatlas     21817 Oct 13 06:42 stderr.txt
[2025-10-13 06:42:26] HITS file was successfully produced:
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas 192817659 Oct 13 06:41 shared/HITS.pool.root.1
[2025-10-13 06:42:26]  *** Contents of shared directory: ***
[2025-10-13 06:42:26] total 402968
[2025-10-13 06:42:26] -rw-r--r--. 2 boincer umatlas 218595272 Oct 13 06:16 ATLAS.root_0
[2025-10-13 06:42:26] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:16 start_atlas.sh
[2025-10-13 06:42:26] -rw-r--r--. 2 boincer umatlas    569685 Oct 13 06:16 input.tar.gz
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas 192817659 Oct 13 06:41 HITS.pool.root.1
[2025-10-13 06:42:26] -rw-------. 1 boincer umatlas    624640 Oct 13 06:42 result.tar.gz
06:42:27 (3287788): run_atlas exited; CPU time 15928.856607
06:42:27 (3287788): called boinc_finish(0)

</stderr_txt>
]]>

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