Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
05:22:30 (276005): wrapper (7.7.26015): starting
05:22:30 (276005): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:22:30] Arguments: --nthreads 12
[2025-10-13 05:22:30] Threads: 12
[2025-10-13 05:22:30] Checking for CVMFS
[2025-10-13 05:22:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:22:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:22:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:22:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:22:30] 2.13.2.0 3676992 382 55756 151658 1 57 16559125 16777217 916 130560 0 1407270 99.997 17618 2182 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-13 05:22:30] CVMFS is ok
[2025-10-13 05:22:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:22:30] Checking for apptainer binary...
[2025-10-13 05:22:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:22:30] Running /usr/bin/apptainer --version
[2025-10-13 05:22:30] apptainer version 1.3.0-bp160.1.36
[2025-10-13 05:22:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:22:30] boinc-runner
[2025-10-13 05:22:30] apptainer works
[2025-10-13 05:22:30] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:22:30] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:22:30] Starting ATLAS job with PandaID=6841068964
[2025-10-13 05:22:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:50:57]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:50:57]  protocol_id=None
[2025-10-13 05:50:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 05:50:57]  replicas=None
[2025-10-13 05:50:57]  scope=mc23_13p6TeV
[2025-10-13 05:50:57]  status=None
[2025-10-13 05:50:57]  status_code=0
[2025-10-13 05:50:57]  storage_token=
[2025-10-13 05:50:57]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6841068964/log.46676269._093173.job.log.tgz.1
[2025-10-13 05:50:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/2b/log.46676269._093173.job.log.tgz.1
[2025-10-13 05:50:57]  workdir=None
[2025-10-13 05:50:57] ]
[2025-10-13 05:50:57] 2025-10-13 10:50:19,959 | INFO     | transferring file log.46676269._093173.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6841068964/log.46676269._093173.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-13 05:50:57] 2025-10-13 10:50:19,959 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6841068964/log.46676269._093173.job.log.tgz.1 /var/lib/boinc/slots/2/log.46676269._093173.job
[2025-10-13 05:50:57] 2025-10-13 10:50:19,970 | INFO     | adding to output.list: log.46676269._093173.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/2b/log.46676269._093173.job.log.tg
[2025-10-13 05:50:57] 2025-10-13 10:50:19,970 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 05:50:57] 2025-10-13 10:50:19,970 | INFO     | summary of transferred files:
[2025-10-13 05:50:57] 2025-10-13 10:50:19,970 | INFO     |  -- lfn=log.46676269._093173.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 05:50:57] 2025-10-13 10:50:19,970 | INFO     | stage-out finished correctly
[2025-10-13 05:50:57] 2025-10-13 10:50:20,060 | INFO     | time since job start (1663s) is within the limit (172800.0s)
[2025-10-13 05:50:57] 2025-10-13 10:50:20,666 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 05:50:57] 2025-10-13 10:50:21,410 | INFO     | job 6841068964 has state=finished
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | preparing for final server update for job 6841068964 in state='finished'
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | this job has now completed (state=finished)
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | log transfer has been attempted: DONE
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | job 6841068964 has finished - writing final server update
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | total number of processed events: 400 (read)
[2025-10-13 05:50:57] 2025-10-13 10:50:21,411 | INFO     | executing command: lscpu
[2025-10-13 05:50:57] 2025-10-13 10:50:21,427 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 05:50:57] 2025-10-13 10:50:21,992 | INFO     | monitor loop #131: job 0:6841068964 is in state 'finished'
[2025-10-13 05:50:57] 2025-10-13 10:50:21,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:50:57] 2025-10-13 10:50:22,065 | INFO     | time since job start (1665s) is within the limit (172800.0s)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,070 | INFO     | time since job start (1667s) is within the limit (172800.0s)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,496 | INFO     | monitor loop #132: job 0:6841068964 is in state 'finished'
[2025-10-13 05:50:57] 2025-10-13 10:50:24,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,645 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 05:50:57] 2025-10-13 10:50:24,648 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3941.6087187499998
[2025-10-13 05:50:57] 2025-10-13 10:50:24,650 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6841068964/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | extracted standard info from prmon json
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | sum of square deviations: 2474465.0
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | sum of deviations: 126038962.5
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | mean x: 1760351859.5
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | mean y: 3087878.25
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | -- intersect: -89661919307.67737
[2025-10-13 05:50:57] 2025-10-13 10:50:24,651 | INFO     | intersect: -89661919307.67737
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | chi2: 0.00041010954190400374
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | -- intersect: -89661919307.67737
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | current memory leak: 50.94 B/s (using 20 data points, chi2=0.00)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | could have reported an average CPU frequency of 4098 MHz (4 samples)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | ..............................
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . Timing measurements:
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . get job = 0 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . initial setup = 3 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . payload setup = 2 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . stage-in = 0 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . payload execution = 1642 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . stage-out = 0 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | . log creation = 0 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,652 | INFO     | ..............................
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | 
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | job summary report
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | --------------------------------------------------
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | PanDA job id: 6841068964
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | task id: 46676269
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | errors: (none)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | pilot state: finished 
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | transexitcode: 0
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | exeerrorcode: 0
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | exeerrordiag: 
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | exitcode: 0
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | exitmsg: OK
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | cpuconsumptiontime: 17318 s
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | nevents: 400
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | neventsw: 0
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | pid: 286758
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | pgrp: 286758
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | corecount: 12
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | event service: False
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | sizes: {0: 2348856, 2: 2349118, 11: 2349146, 1648: 2374016, 1650: 2383070, 1654: 2383208}
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | --------------------------------------------------
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | 
[2025-10-13 05:50:57] 2025-10-13 10:50:24,681 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-13 05:50:57] 2025-10-13 10:50:24,692 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,692 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | job 6841068964 has completed (purged errors)
[2025-10-13 05:50:57] 2025-10-13 10:50:24,693 | INFO     | overall cleanup function is called
[2025-10-13 05:50:57] 2025-10-13 10:50:25,699 | INFO     | --- collectZombieJob: --- 10, [286758]
[2025-10-13 05:50:57] 2025-10-13 10:50:25,699 | INFO     | zombie collector waiting for pid 286758
[2025-10-13 05:50:57] 2025-10-13 10:50:25,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:50:57] 2025-10-13 10:50:25,700 | INFO     | collected zombie processes
[2025-10-13 05:50:57] 2025-10-13 10:50:25,700 | INFO     | will attempt to kill all subprocesses of pid=286758
[2025-10-13 05:50:57] 2025-10-13 10:50:25,748 | INFO     | process IDs to be killed: [286758] (in reverse order)
[2025-10-13 05:50:57] 2025-10-13 10:50:25,775 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:50:57] 2025-10-13 10:50:25,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:50:57] 2025-10-13 10:50:25,777 | INFO     | did not find any defunct processes belonging to 286758
[2025-10-13 05:50:57] 2025-10-13 10:50:25,779 | INFO     | did not find any defunct processes belonging to 286758
[2025-10-13 05:50:57] 2025-10-13 10:50:25,779 | INFO     | ready for new job
[2025-10-13 05:50:57] 2025-10-13 10:50:25,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:50:57] 2025-10-13 10:50:25,780 | INFO     | ***************************************
[2025-10-13 05:50:57] 2025-10-13 10:50:25,780 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:50:57] 2025-10-13 10:50:25,780 | INFO     | ***************************************
[2025-10-13 05:50:57] 2025-10-13 10:50:25,780 | INFO     | 
[2025-10-13 05:50:57] 2025-10-13 10:50:25,781 | INFO     | architecture information:
[2025-10-13 05:50:57] 2025-10-13 10:50:25,781 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:50:57] 2025-10-13 10:50:25,789 | INFO     | cat /etc/os-release:
[2025-10-13 05:50:57] NAME="CentOS Linux"
[2025-10-13 05:50:57] VERSION="7 (Core)"
[2025-10-13 05:50:57] ID="centos"
[2025-10-13 05:50:57] ID_LIKE="rhel fedora"
[2025-10-13 05:50:57] VERSION_ID="7"
[2025-10-13 05:50:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:50:57] ANSI_COLOR="0;31"
[2025-10-13 05:50:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:50:57] HOME_URL="https://www.centos.org/"
[2025-10-13 05:50:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:50:57] 
[2025-10-13 05:50:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:50:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:50:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:50:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:50:57] 
[2025-10-13 05:50:57] 2025-10-13 10:50:25,790 | INFO     | ***************************************
[2025-10-13 05:50:57] 2025-10-13 10:50:26,292 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-13 05:50:57] 2025-10-13 10:50:26,301 | INFO     | sufficient remaining disk space (3855840444416 B)
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | INFO     | update_server=False
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | INFO     | aborting loop
[2025-10-13 05:50:57] 2025-10-13 10:50:26,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:50:57] 2025-10-13 10:50:26,698 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:50:57] 2025-10-13 10:50:27,188 | INFO     | all job control threads have been joined
[2025-10-13 05:50:57] 2025-10-13 10:50:27,235 | INFO     | all data control threads have been joined
[2025-10-13 05:50:57] 2025-10-13 10:50:27,306 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,307 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,307 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,318 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,326 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,397 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,586 | INFO     | all payload control threads have been joined
[2025-10-13 05:50:57] 2025-10-13 10:50:27,869 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:27,991 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:28,193 | INFO     | [job] control thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:28,240 | INFO     | [data] control thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:28,277 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:28,306 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:28,591 | INFO     | [payload] control thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:28,740 | INFO     | [job] validate thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:30,703 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:36,479 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:50:57] 2025-10-13 10:50:37,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:50:57] 2025-10-13 10:50:39,294 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:50:57] 2025-10-13 10:50:40,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485767206720)>', '<ExcThread(monitor, started 140484689262336)>']
[2025-10-13 05:50:57] 2025-10-13 10:50:45,772 | INFO     | all workflow threads have been joined
[2025-10-13 05:50:57] 2025-10-13 10:50:45,772 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:50:57] 2025-10-13 10:50:45,773 | INFO     | traces error code: 0
[2025-10-13 05:50:57] 2025-10-13 10:50:45,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:50:57] 2025-10-13 10:50:57,203 | INFO     | PID=279897 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 05:50:57] 2025-10-13 10:50:57,204 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:50:57] 2025-10-13 10:50:57,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:50:57] 2025-10-13 10:50:57,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:50:57] 2025-10-13 10:50:57,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:50:57] 2025-10-13 10:50:57,204 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 05:50:57] 2025-10-13 10:50:57,204 | INFO     | [monitor] control thread has ended
[2025-10-13 05:50:57] 2025-10-13 10:50:57,269 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:50:57] 2025-10-13 10:50:57,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:50:57] 2025-10-13 10:50:57,272 [wrapper] pilotpid: 279897
[2025-10-13 05:50:57] 2025-10-13 10:50:57,273 [wrapper] Pilot exit status: 0
[2025-10-13 05:50:57] 2025-10-13 10:50:57,277 [wrapper] pandaids: 6841068964
[2025-10-13 05:50:57] 2025-10-13 10:50:57,294 [wrapper] cleanup supervisor_pilot  307172 279898
[2025-10-13 05:50:57] 2025-10-13 10:50:57,295 [wrapper] Test setup, not cleaning
[2025-10-13 05:50:57] 2025-10-13 10:50:57,297 [wrapper] apfmon messages muted
[2025-10-13 05:50:57] 2025-10-13 10:50:57,298 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:50:57] 2025-10-13 10:50:57,302 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:50:57]  *** Error codes and diagnostics ***
[2025-10-13 05:50:57]     "exeErrorCode": 0,
[2025-10-13 05:50:57]     "exeErrorDiag": "",
[2025-10-13 05:50:57]     "pilotErrorCode": 0,
[2025-10-13 05:50:57]     "pilotErrorDiag": "",
[2025-10-13 05:50:57]  *** Listing of results directory ***
[2025-10-13 05:50:57] total 411820
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc    557409 Oct 12 19:11 pilot3.tar.gz
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc      5112 Oct 12 19:26 queuedata.json
[2025-10-13 05:50:57] -rwx------. 1 boinc boinc     36292 Oct 12 19:27 runpilot2-wrapper.sh
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc       100 Oct 13 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:50:57] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 05:22 run_atlas
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc       105 Oct 13 05:22 job.xml
[2025-10-13 05:50:57] -rw-r--r--. 2 boinc boinc 222342608 Oct 13 05:22 EVNT.46676267._004693.pool.root.1
[2025-10-13 05:50:57] -rw-r--r--. 2 boinc boinc     15120 Oct 13 05:22 start_atlas.sh
[2025-10-13 05:50:57] drwxrwx--x. 1 boinc boinc        76 Oct 13 05:22 shared
[2025-10-13 05:50:57] -rw-r--r--. 2 boinc boinc    569684 Oct 13 05:22 input.tar.gz
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc     10052 Oct 13 05:22 init_data.xml
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc         0 Oct 13 05:22 boinc_setup_complete
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc         0 Oct 13 05:22 boinc_lockfile
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc      2549 Oct 13 05:22 pandaJob.out
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc    972497 Oct 13 05:22 agis_schedconf.cvmfs.json
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc   1560580 Oct 13 05:22 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:50:57] drwx------. 1 boinc boinc       414 Oct 13 05:22 pilot3
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc 194208190 Oct 13 05:50 HITS.46676269._093173.pool.root.1
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc       529 Oct 13 05:50 boinc_task_state.xml
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc      1027 Oct 13 05:50 memory_monitor_summary.json
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc    354112 Oct 13 05:50 log.46676269._093173.job.log.tgz.1
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc      7788 Oct 13 05:50 heartbeat.json
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc        27 Oct 13 05:50 wrapper_checkpoint.txt
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:50 boinc_mmap_file
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc       816 Oct 13 05:50 pilotlog.txt
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc        95 Oct 13 05:50 pilot_heartbeat.json
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc    280973 Oct 13 05:50 log.46676269._093173.job.log.1
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc       357 Oct 13 05:50 output.list
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:50 runtime_log
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc    655360 Oct 13 05:50 result.tar.gz
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc      8727 Oct 13 05:50 runtime_log.err
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc       651 Oct 13 05:50 lZGLDmYaLS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuBmNDmJQdccn.diag
[2025-10-13 05:50:57] -rw-r--r--. 1 boinc boinc     21410 Oct 13 05:50 stderr.txt
[2025-10-13 05:50:57] HITS file was successfully produced:
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc 194208190 Oct 13 05:50 shared/HITS.pool.root.1
[2025-10-13 05:50:57]  *** Contents of shared directory: ***
[2025-10-13 05:50:57] total 408008
[2025-10-13 05:50:57] -rw-r--r--. 2 boinc boinc 222342608 Oct 13 05:22 ATLAS.root_0
[2025-10-13 05:50:57] -rw-r--r--. 2 boinc boinc     15120 Oct 13 05:22 start_atlas.sh
[2025-10-13 05:50:57] -rw-r--r--. 2 boinc boinc    569684 Oct 13 05:22 input.tar.gz
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc 194208190 Oct 13 05:50 HITS.pool.root.1
[2025-10-13 05:50:57] -rw-------. 1 boinc boinc    655360 Oct 13 05:50 result.tar.gz
05:50:59 (276005): run_atlas exited; CPU time 17325.121626
05:50:59 (276005): called boinc_finish(0)

</stderr_txt>
]]>

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