Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:07:32 (3060479): wrapper (7.7.26015): starting
06:07:32 (3060479): wrapper: running run_atlas (--nthreads 9)
[2025-10-13 06:07:32] Arguments: --nthreads 9
[2025-10-13 06:07:32] Threads: 9
[2025-10-13 06:07:32] Checking for CVMFS
[2025-10-13 06:07:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:07:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:07:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:07:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:07:32] 2.13.2.0 3269412 37026 375048 151657 2 70 28933634 40960001 24682 16776704 0 479905328 99.849 188046315 36740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-13 06:07:32] CVMFS is ok
[2025-10-13 06:07:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:07:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:07:32] Further information can be found at the LHC@home message board.
[2025-10-13 06:07:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:07:32] Checking for apptainer binary...
[2025-10-13 06:07:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:07:32] Running /usr/bin/apptainer --version
[2025-10-13 06:07:32] apptainer version 1.4.3-1.el9
[2025-10-13 06:07:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:07:32] c8-16-2.aglt2.org
[2025-10-13 06:07:32] apptainer works
[2025-10-13 06:07:32] Set ATHENA_PROC_NUMBER=9
[2025-10-13 06:07:32] Set ATHENA_CORE_NUMBER=9
[2025-10-13 06:07:32] Starting ATLAS job with PandaID=6842780014
[2025-10-13 06:07:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:50:09]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:50:09]  lfn=log.46676269._096583.job.log.tgz.1
[2025-10-13 06:50:09]  mtime=0
[2025-10-13 06:50:09]  protocol_id=None
[2025-10-13 06:50:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-13 06:50:09]  replicas=None
[2025-10-13 06:50:09]  scope=mc23_13p6TeV
[2025-10-13 06:50:09]  status=None
[2025-10-13 06:50:09]  status_code=0
[2025-10-13 06:50:09]  storage_token=
[2025-10-13 06:50:09]  surl=/tmp/boinchome/slots/11/PanDA_Pilot-6842780014/log.46676269._096583.job.log.tgz.1
[2025-10-13 06:50:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/87/log.46676269._096583.job.log.tgz.1
[2025-10-13 06:50:09]  workdir=None
[2025-10-13 06:50:09] ]
[2025-10-13 06:50:09] 2025-10-13 10:49:32,345 | INFO     | transferring file log.46676269._096583.job.log.tgz.1 from /tmp/boinchome/slots/11/PanDA_Pilot-6842780014/log.46676269._096583.job.log.tgz.1 to /tmp/boinchome/slots
[2025-10-13 06:50:09] 2025-10-13 10:49:32,345 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/11/PanDA_Pilot-6842780014/log.46676269._096583.job.log.tgz.1 /tmp/boinchome/slots/11/log.46676269._096583.j
[2025-10-13 06:50:09] 2025-10-13 10:49:32,360 | INFO     | adding to output.list: log.46676269._096583.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/87/log.46676269._096583.job.log.tg
[2025-10-13 06:50:09] 2025-10-13 10:49:32,360 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:50:09] 2025-10-13 10:49:32,360 | INFO     | summary of transferred files:
[2025-10-13 06:50:09] 2025-10-13 10:49:32,360 | INFO     |  -- lfn=log.46676269._096583.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:50:09] 2025-10-13 10:49:32,361 | INFO     | stage-out finished correctly
[2025-10-13 06:50:09] 2025-10-13 10:49:32,408 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:50:09] 2025-10-13 10:49:32,466 | INFO     | job 6842780014 has state=finished
[2025-10-13 06:50:09] 2025-10-13 10:49:32,466 | INFO     | preparing for final server update for job 6842780014 in state='finished'
[2025-10-13 06:50:09] 2025-10-13 10:49:32,466 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:50:09] 2025-10-13 10:49:32,466 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:50:09] 2025-10-13 10:49:32,466 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:50:09] 2025-10-13 10:49:32,466 | INFO     | job 6842780014 has finished - writing final server update
[2025-10-13 06:50:09] 2025-10-13 10:49:32,467 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:50:09] 2025-10-13 10:49:32,467 | INFO     | executing command: lscpu
[2025-10-13 06:50:09] 2025-10-13 10:49:32,520 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:50:09] 2025-10-13 10:49:33,623 | INFO     | time since job start (2509s) is within the limit (172800.0s)
[2025-10-13 06:50:09] 2025-10-13 10:49:35,077 | WARNING  | process 3071016 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 06:50:09] 2025-10-13 10:49:35,078 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6842780014/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:50:09] 2025-10-13 10:49:35,454 | INFO     | number of running child processes to parent process 3071016: 1
[2025-10-13 06:50:09] 2025-10-13 10:49:35,454 | INFO     | maximum number of monitored processes: 6
[2025-10-13 06:50:09] 2025-10-13 10:49:35,629 | INFO     | time since job start (2511s) is within the limit (172800.0s)
[2025-10-13 06:50:09] 2025-10-13 10:49:35,969 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-13 06:50:09] 2025-10-13 10:49:35,973 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3589.4199843750025
[2025-10-13 06:50:09] 2025-10-13 10:49:35,994 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6842780014/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:50:09] 2025-10-13 10:49:35,994 | INFO     | extracted standard info from prmon json
[2025-10-13 06:50:09] 2025-10-13 10:49:35,994 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:50:09] 2025-10-13 10:49:35,994 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:50:09] 2025-10-13 10:49:35,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:50:09] 2025-10-13 10:49:35,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | sum of square deviations: 12176972.5
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | sum of deviations: 77321678.5
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | mean x: 1760351404.5
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | mean y: 2221382.6764705884
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | -- intersect: -11175706903.338173
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | intersect: -11175706903.338173
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | chi2: 0.016847169300309637
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | -- intersect: -11175706903.338173
[2025-10-13 06:50:09] 2025-10-13 10:49:35,995 | INFO     | current memory leak: 6.35 B/s (using 34 data points, chi2=0.02)
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | could have reported an average CPU frequency of 3725 MHz (5 samples)
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | ..............................
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . Timing measurements:
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . get job = 0 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . initial setup = 2 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . payload setup = 6 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . stage-in = 0 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . payload execution = 2481 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . stage-out = 0 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | . log creation = 0 s
[2025-10-13 06:50:09] 2025-10-13 10:49:35,996 | INFO     | ..............................
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | 
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | job summary report
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | --------------------------------------------------
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | PanDA job id: 6842780014
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | task id: 46676269
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | errors: (none)
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | pilot state: finished 
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | transexitcode: 0
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | exeerrorcode: 0
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | exeerrordiag: 
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | exitcode: 0
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | exitmsg: OK
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | cpuconsumptiontime: 20001 s
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | nevents: 400
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | neventsw: 0
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | pid: 3071016
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | pgrp: 3071016
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | corecount: 9
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | event service: False
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | sizes: {0: 2348807, 1: 2348807, 5: 2349097, 11: 2349153, 2492: 2383472, 2493: 2383472, 2496: 2383826}
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | --------------------------------------------------
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | 
[2025-10-13 06:50:09] 2025-10-13 10:49:36,031 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-10-13 06:50:09] 2025-10-13 10:49:36,044 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | job 6842780014 has completed (purged errors)
[2025-10-13 06:50:09] 2025-10-13 10:49:36,045 | INFO     | overall cleanup function is called
[2025-10-13 06:50:09] 2025-10-13 10:49:37,052 | INFO     | --- collectZombieJob: --- 10, [3071016]
[2025-10-13 06:50:09] 2025-10-13 10:49:37,053 | INFO     | zombie collector waiting for pid 3071016
[2025-10-13 06:50:09] 2025-10-13 10:49:37,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:50:09] 2025-10-13 10:49:37,053 | INFO     | collected zombie processes
[2025-10-13 06:50:09] 2025-10-13 10:49:37,053 | INFO     | will attempt to kill all subprocesses of pid=3071016
[2025-10-13 06:50:09] 2025-10-13 10:49:37,667 | INFO     | process IDs to be killed: [3071016] (in reverse order)
[2025-10-13 06:50:09] 2025-10-13 10:49:37,842 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:50:09] 2025-10-13 10:49:37,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:50:09] 2025-10-13 10:49:37,868 | INFO     | did not find any defunct processes belonging to 3071016
[2025-10-13 06:50:09] 2025-10-13 10:49:37,892 | INFO     | did not find any defunct processes belonging to 3071016
[2025-10-13 06:50:09] 2025-10-13 10:49:37,892 | INFO     | ready for new job
[2025-10-13 06:50:09] 2025-10-13 10:49:37,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:50:09] 2025-10-13 10:49:37,893 | INFO     | ***************************************
[2025-10-13 06:50:09] 2025-10-13 10:49:37,893 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:50:09] 2025-10-13 10:49:37,893 | INFO     | ***************************************
[2025-10-13 06:50:09] 2025-10-13 10:49:37,893 | INFO     | 
[2025-10-13 06:50:09] 2025-10-13 10:49:37,896 | INFO     | architecture information:
[2025-10-13 06:50:09] 2025-10-13 10:49:37,897 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:50:09] 2025-10-13 10:49:37,909 | INFO     | cat /etc/os-release:
[2025-10-13 06:50:09] NAME="CentOS Linux"
[2025-10-13 06:50:09] VERSION="7 (Core)"
[2025-10-13 06:50:09] ID="centos"
[2025-10-13 06:50:09] ID_LIKE="rhel fedora"
[2025-10-13 06:50:09] VERSION_ID="7"
[2025-10-13 06:50:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:50:09] ANSI_COLOR="0;31"
[2025-10-13 06:50:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:50:09] HOME_URL="https://www.centos.org/"
[2025-10-13 06:50:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:50:09] 
[2025-10-13 06:50:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:50:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:50:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:50:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:50:09] 
[2025-10-13 06:50:09] 2025-10-13 10:49:37,909 | INFO     | ***************************************
[2025-10-13 06:50:09] 2025-10-13 10:49:38,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-10-13 06:50:09] 2025-10-13 10:49:38,429 | INFO     | sufficient remaining disk space (168309030912 B)
[2025-10-13 06:50:09] 2025-10-13 10:49:38,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:50:09] 2025-10-13 10:49:38,430 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:50:09] 2025-10-13 10:49:38,430 | INFO     | update_server=False
[2025-10-13 06:50:09] 2025-10-13 10:49:38,430 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:50:09] 2025-10-13 10:49:38,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:50:09] 2025-10-13 10:49:38,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:50:09] 2025-10-13 10:49:38,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:50:09] 2025-10-13 10:49:38,962 | INFO     | aborting loop
[2025-10-13 06:50:09] 2025-10-13 10:49:39,082 | INFO     | all data control threads have been joined
[2025-10-13 06:50:09] 2025-10-13 10:49:39,142 | INFO     | all job control threads have been joined
[2025-10-13 06:50:09] 2025-10-13 10:49:39,435 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:39,526 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:39,536 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:39,702 | INFO     | all payload control threads have been joined
[2025-10-13 06:50:09] 2025-10-13 10:49:39,967 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,072 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,087 | INFO     | [data] control thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,133 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,147 | INFO     | [job] control thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,436 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,617 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,653 | INFO     | [job] validate thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,705 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,707 | INFO     | [payload] control thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:40,891 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:41,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:50:09] 2025-10-13 10:49:42,044 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:42,476 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:50:09] 2025-10-13 10:49:47,366 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:50:09] 2025-10-13 10:49:48,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443108435776)>', '<ExcThread(monitor, started 140442827982592)>']
[2025-10-13 06:50:09] 2025-10-13 10:49:53,442 | INFO     | all workflow threads have been joined
[2025-10-13 06:50:09] 2025-10-13 10:49:53,442 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:50:09] 2025-10-13 10:49:53,442 | INFO     | traces error code: 0
[2025-10-13 06:50:09] 2025-10-13 10:49:53,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | INFO     | PID=3064346 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | INFO     | .. there are 37 such processes running
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:50:09] 2025-10-13 10:50:09,497 | INFO     | [monitor] control thread has ended
[2025-10-13 06:50:09] 2025-10-13 10:50:09,597 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:50:09] 2025-10-13 10:50:09,600 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:50:09] 2025-10-13 10:50:09,602 [wrapper] pilotpid: 3064346
[2025-10-13 06:50:09] 2025-10-13 10:50:09,604 [wrapper] Pilot exit status: 0
[2025-10-13 06:50:09] 2025-10-13 10:50:09,612 [wrapper] pandaids: 6842780014
[2025-10-13 06:50:09] 2025-10-13 10:50:09,769 [wrapper] cleanup supervisor_pilot 3301389 3064347
[2025-10-13 06:50:09] 2025-10-13 10:50:09,772 [wrapper] Test setup, not cleaning
[2025-10-13 06:50:09] 2025-10-13 10:50:09,774 [wrapper] apfmon messages muted
[2025-10-13 06:50:09] 2025-10-13 10:50:09,776 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:50:09] 2025-10-13 10:50:09,778 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:50:09]  *** Error codes and diagnostics ***
[2025-10-13 06:50:09]     "exeErrorCode": 0,
[2025-10-13 06:50:09]     "exeErrorDiag": "",
[2025-10-13 06:50:09]     "pilotErrorCode": 0,
[2025-10-13 06:50:09]     "pilotErrorDiag": "",
[2025-10-13 06:50:09]  *** Listing of results directory ***
[2025-10-13 06:50:09] total 405020
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas    557409 Oct 13 05:31 pilot3.tar.gz
[2025-10-13 06:50:09] -rwx------. 1 boincer umatlas     36292 Oct 13 05:41 runpilot2-wrapper.sh
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas      5112 Oct 13 05:41 queuedata.json
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas       100 Oct 13 06:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:50:09] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 13 06:07 run_atlas
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas       105 Oct 13 06:07 job.xml
[2025-10-13 06:50:09] -rw-r--r--. 2 boincer umatlas 217493696 Oct 13 06:07 EVNT.46676267._001378.pool.root.1
[2025-10-13 06:50:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:07 start_atlas.sh
[2025-10-13 06:50:09] drwxrwx--x. 2 boincer umatlas      4096 Oct 13 06:07 shared
[2025-10-13 06:50:09] -rw-r--r--. 2 boincer umatlas    569687 Oct 13 06:07 input.tar.gz
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas         0 Oct 13 06:07 boinc_lockfile
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas      2549 Oct 13 06:07 pandaJob.out
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas    972849 Oct 13 06:07 agis_schedconf.cvmfs.json
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas   1560580 Oct 13 06:07 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:50:09] drwx------. 5 boincer umatlas      4096 Oct 13 06:07 pilot3
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas      7164 Oct 13 06:47 init_data.xml
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas       529 Oct 13 06:49 boinc_task_state.xml
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas 191941236 Oct 13 06:49 HITS.46676269._096583.pool.root.1
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas      1030 Oct 13 06:49 memory_monitor_summary.json
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas        95 Oct 13 06:49 pilot_heartbeat.json
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas    314591 Oct 13 06:49 log.46676269._096583.job.log.tgz.1
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas      7762 Oct 13 06:49 heartbeat.json
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:50 boinc_mmap_file
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas        27 Oct 13 06:50 wrapper_checkpoint.txt
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas       823 Oct 13 06:50 pilotlog.txt
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas    388389 Oct 13 06:50 log.46676269._096583.job.log.1
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas       357 Oct 13 06:50 output.list
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas       620 Oct 13 06:50 runtime_log
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas    727040 Oct 13 06:50 result.tar.gz
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas      8712 Oct 13 06:50 runtime_log.err
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas       651 Oct 13 06:50 8XLNDmxEUS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOkmNDmzeJMpn.diag
[2025-10-13 06:50:09] -rw-r--r--. 1 boincer umatlas     21649 Oct 13 06:50 stderr.txt
[2025-10-13 06:50:09] HITS file was successfully produced:
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas 191941236 Oct 13 06:49 shared/HITS.pool.root.1
[2025-10-13 06:50:09]  *** Contents of shared directory: ***
[2025-10-13 06:50:09] total 401136
[2025-10-13 06:50:09] -rw-r--r--. 2 boincer umatlas 217493696 Oct 13 06:07 ATLAS.root_0
[2025-10-13 06:50:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 13 06:07 start_atlas.sh
[2025-10-13 06:50:09] -rw-r--r--. 2 boincer umatlas    569687 Oct 13 06:07 input.tar.gz
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas 191941236 Oct 13 06:49 HITS.pool.root.1
[2025-10-13 06:50:09] -rw-------. 1 boincer umatlas    727040 Oct 13 06:50 result.tar.gz
06:50:11 (3060479): run_atlas exited; CPU time 20109.661155
06:50:11 (3060479): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN