Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
07:59:46 (579863): wrapper (7.7.26015): starting
07:59:46 (579863): wrapper: running run_atlas (--nthreads 5)
[2025-10-13 07:59:46] Arguments: --nthreads 5
[2025-10-13 07:59:46] Threads: 5
[2025-10-13 07:59:46] Checking for CVMFS
[2025-10-13 07:59:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:59:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:59:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:59:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:59:46] 2.11.0.0 282648 120 65236 151660 3 188 2809488 4096000 3937 130560 0 819019 99.997 8043 4742 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 07:59:46] CVMFS is ok
[2025-10-13 07:59:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:59:46] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 07:59:46] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 07:59:46] Further information can be found at the LHC@home message board.
[2025-10-13 07:59:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:59:46] Checking for apptainer binary...
[2025-10-13 07:59:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:59:46] Running /usr/bin/apptainer --version
[2025-10-13 07:59:46] apptainer version 1.4.3
[2025-10-13 07:59:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:59:46] x32-linux4
[2025-10-13 07:59:46] apptainer works
[2025-10-13 07:59:46] Set ATHENA_PROC_NUMBER=5
[2025-10-13 07:59:46] Set ATHENA_CORE_NUMBER=5
[2025-10-13 07:59:46] Starting ATLAS job with PandaID=6838001088
[2025-10-13 07:59:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 09:55:10]  *** The last 200 lines of the pilot log: ***
[2025-10-13 09:55:10] 2025-10-13 13:54:15,850 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 09:55:10] 2025-10-13 13:54:15,850 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 09:55:10] 2025-10-13 13:54:15,851 | INFO     | fitting pss+swap vs Time
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | sum of square deviations: 447383272.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | sum of deviations: 4888517735.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | mean x: 1760360227.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | mean y: 2314016.690265487
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | -- intersect: -19232987632.40252
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | intersect: -19232987632.40252
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | chi2: 1.7853957573041201
[2025-10-13 09:55:10] 2025-10-13 13:54:15,852 | INFO     | sum of square deviations: 390582207.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | sum of deviations: 10898412072.999998
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | mean x: 1760360074.5
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | mean y: 2329523.037037037
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | -- intersect: -49116982992.799034
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | intersect: -49116982992.799034
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | chi2: 1.116556991695947
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | current chi2=1.116556991695947 (change=37.46165313051345 %)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,853 | INFO     | sum of square deviations: 338804492.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | sum of deviations: 10285316872.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | mean x: 1760359922.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | mean y: 2327717.980582524
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | -- intersect: -53438107795.9004
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | intersect: -53438107795.9004
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | chi2: 1.1184129141565604
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | current chi2=1.1184129141565604 (change=-0.16621833676348358 %)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | right removable region: 102
[2025-10-13 09:55:10] 2025-10-13 13:54:15,854 | INFO     | sum of square deviations: 390582207.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | sum of deviations: -5774647411.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | mean x: 1760360379.5
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | mean y: 2341796.296296296
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | -- intersect: 26028771894.036648
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | intersect: 26028771894.036648
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | chi2: 0.6955770191657101
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | current chi2=0.6955770191657101 (change=61.0407375328367 %)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,855 | INFO     | sum of square deviations: 338804492.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | sum of deviations: -5297266413.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | mean x: 1760360532.0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | mean y: 2340379.4660194176
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | -- intersect: 27525879591.969765
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | intersect: 27525879591.969765
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | chi2: 0.696198371949685
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | current chi2=0.696198371949685 (change=-0.08932911336262492 %)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | left removable region: 20
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | sum of square deviations: 170944600.5
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | sum of deviations: 562156754.5
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | mean x: 1760360501.5
[2025-10-13 09:55:10] 2025-10-13 13:54:15,856 | INFO     | mean y: 2358100.0853658537
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | -- intersect: -5786643385.651718
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | intersect: -5786643385.651718
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | chi2: 0.0003303834941088642
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | -- intersect: -5786643385.651718
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | current memory leak: 3.29 B/s (using 82 data points, chi2=0.00)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | could have reported an average CPU frequency of 3834 MHz (7 samples)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | ..............................
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . Timing measurements:
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . get job = 0 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . initial setup = 1 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . payload setup = 2 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . stage-in = 0 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . payload execution = 6837 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,857 | INFO     | . stage-out = 0 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,858 | INFO     | . log creation = 0 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,858 | INFO     | ..............................
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | 
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | job summary report
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | --------------------------------------------------
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | PanDA job id: 6838001088
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | task id: 46676269
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | errors: (none)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | pilot state: finished 
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | transexitcode: 0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | exeerrorcode: 0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | exeerrordiag: 
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | exitcode: 0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | exitmsg: OK
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | cpuconsumptiontime: 27200 s
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | nevents: 400
[2025-10-13 09:55:10] 2025-10-13 13:54:15,923 | INFO     | neventsw: 0
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | pid: 593736
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | pgrp: 593736
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | corecount: 5
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | event service: False
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | sizes: {0: 2348721, 1: 2348920, 3: 2349182, 11: 2349210, 6843: 2376480, 6844: 2376479, 6846: 2385675, 6848: 2385731, 6851: 2385925}
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | --------------------------------------------------
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | 
[2025-10-13 09:55:10] 2025-10-13 13:54:15,924 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-13 09:55:10] 2025-10-13 13:54:15,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 09:55:10] 2025-10-13 13:54:15,940 | INFO     | job 6838001088 has completed (purged errors)
[2025-10-13 09:55:10] 2025-10-13 13:54:15,940 | INFO     | overall cleanup function is called
[2025-10-13 09:55:10] 2025-10-13 13:54:16,947 | INFO     | --- collectZombieJob: --- 10, [593736]
[2025-10-13 09:55:10] 2025-10-13 13:54:16,947 | INFO     | zombie collector waiting for pid 593736
[2025-10-13 09:55:10] 2025-10-13 13:54:16,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 09:55:10] 2025-10-13 13:54:16,948 | INFO     | collected zombie processes
[2025-10-13 09:55:10] 2025-10-13 13:54:16,948 | INFO     | will attempt to kill all subprocesses of pid=593736
[2025-10-13 09:55:10] 2025-10-13 13:54:17,072 | INFO     | process IDs to be killed: [593736] (in reverse order)
[2025-10-13 09:55:10] 2025-10-13 13:54:17,120 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 09:55:10] 2025-10-13 13:54:17,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 09:55:10] 2025-10-13 13:54:17,123 | INFO     | did not find any defunct processes belonging to 593736
[2025-10-13 09:55:10] 2025-10-13 13:54:17,126 | INFO     | did not find any defunct processes belonging to 593736
[2025-10-13 09:55:10] 2025-10-13 13:54:17,126 | INFO     | ready for new job
[2025-10-13 09:55:10] 2025-10-13 13:54:17,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 09:55:10] 2025-10-13 13:54:17,127 | INFO     | ***************************************
[2025-10-13 09:55:10] 2025-10-13 13:54:17,127 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 09:55:10] 2025-10-13 13:54:17,128 | INFO     | ***************************************
[2025-10-13 09:55:10] 2025-10-13 13:54:17,128 | INFO     | 
[2025-10-13 09:55:10] 2025-10-13 13:54:17,129 | INFO     | architecture information:
[2025-10-13 09:55:10] 2025-10-13 13:54:17,129 | INFO     | executing command: cat /etc/os-release
[2025-10-13 09:55:10] 2025-10-13 13:54:17,138 | INFO     | cat /etc/os-release:
[2025-10-13 09:55:10] NAME="CentOS Linux"
[2025-10-13 09:55:10] VERSION="7 (Core)"
[2025-10-13 09:55:10] ID="centos"
[2025-10-13 09:55:10] ID_LIKE="rhel fedora"
[2025-10-13 09:55:10] VERSION_ID="7"
[2025-10-13 09:55:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 09:55:10] ANSI_COLOR="0;31"
[2025-10-13 09:55:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 09:55:10] HOME_URL="https://www.centos.org/"
[2025-10-13 09:55:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 09:55:10] 
[2025-10-13 09:55:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 09:55:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 09:55:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 09:55:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 09:55:10] 
[2025-10-13 09:55:10] 2025-10-13 13:54:17,139 | INFO     | ***************************************
[2025-10-13 09:55:10] 2025-10-13 13:54:17,639 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | INFO     | sufficient remaining disk space (151058907136 B)
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | INFO     | update_server=False
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | INFO     | aborting loop
[2025-10-13 09:55:10] 2025-10-13 13:54:17,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 09:55:10] 2025-10-13 13:54:17,687 | INFO     | all payload control threads have been joined
[2025-10-13 09:55:10] 2025-10-13 13:54:18,005 | INFO     | all job control threads have been joined
[2025-10-13 09:55:10] 2025-10-13 13:54:18,312 | INFO     | all data control threads have been joined
[2025-10-13 09:55:10] 2025-10-13 13:54:18,655 | INFO     | [job] queue monitor thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,655 | INFO     | [job] retrieve thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,656 | INFO     | [job] job monitor thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,692 | INFO     | [payload] control thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,745 | INFO     | [payload] failed_post thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,772 | INFO     | [data] copytool_in thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,867 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:18,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 09:55:10] 2025-10-13 13:54:19,010 | INFO     | [job] control thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:19,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 09:55:10] 2025-10-13 13:54:19,317 | INFO     | [data] control thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:19,484 | INFO     | [job] validate thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:19,535 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:19,545 | INFO     | [payload] validate_post thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:19,618 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:20,932 | INFO     | [data] copytool_out thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:23,150 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:28,128 | INFO     | job.realtimelogging is not enabled
[2025-10-13 09:55:10] 2025-10-13 13:54:29,132 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 09:55:10] 2025-10-13 13:54:47,483 | INFO     | PID=583899 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 09:55:10] 2025-10-13 13:54:47,483 | INFO     | .. there are 5 such processes running
[2025-10-13 09:55:10] 2025-10-13 13:54:47,483 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 09:55:10] 2025-10-13 13:54:47,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 09:55:10] 2025-10-13 13:54:47,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 09:55:10] 2025-10-13 13:55:03,657 | INFO     | [monitor] cgroup control has ended
[2025-10-13 09:55:10] 2025-10-13 13:55:05,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135156844201792)>', '<ExcThread(monitor, started 135155842807552)>']
[2025-10-13 09:55:10] 2025-10-13 13:55:05,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 09:55:10] 2025-10-13 13:55:05,572 | INFO     | [monitor] control thread has ended
[2025-10-13 09:55:10] 2025-10-13 13:55:10,301 | INFO     | all workflow threads have been joined
[2025-10-13 09:55:10] 2025-10-13 13:55:10,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 09:55:10] 2025-10-13 13:55:10,301 | INFO     | traces error code: 0
[2025-10-13 09:55:10] 2025-10-13 13:55:10,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 09:55:10] 2025-10-13 13:55:10,349 [wrapper] ==== pilot stdout END ====
[2025-10-13 09:55:10] 2025-10-13 13:55:10,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 09:55:10] 2025-10-13 13:55:10,352 [wrapper] pilotpid: 583899
[2025-10-13 09:55:10] 2025-10-13 13:55:10,354 [wrapper] Pilot exit status: 0
[2025-10-13 09:55:10] 2025-10-13 13:55:10,358 [wrapper] pandaids: 6838001088
[2025-10-13 09:55:10] 2025-10-13 13:55:10,380 [wrapper] cleanup supervisor_pilot  688626 583900
[2025-10-13 09:55:10] 2025-10-13 13:55:10,381 [wrapper] Test setup, not cleaning
[2025-10-13 09:55:10] 2025-10-13 13:55:10,383 [wrapper] apfmon messages muted
[2025-10-13 09:55:10] 2025-10-13 13:55:10,384 [wrapper] ==== wrapper stdout END ====
[2025-10-13 09:55:10] 2025-10-13 13:55:10,386 [wrapper] ==== wrapper stderr END ====
[2025-10-13 09:55:10]  *** Error codes and diagnostics ***
[2025-10-13 09:55:10]     "exeErrorCode": 0,
[2025-10-13 09:55:10]     "exeErrorDiag": "",
[2025-10-13 09:55:10]     "pilotErrorCode": 0,
[2025-10-13 09:55:10]     "pilotErrorDiag": "",
[2025-10-13 09:55:10]  *** Listing of results directory ***
[2025-10-13 09:55:10] total 406528
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc    557409 Oct 10 23:19 pilot3.tar.gz
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc      5112 Oct 10 23:24 queuedata.json
[2025-10-13 09:55:10] -rwx------ 1 boinc boinc     36292 Oct 10 23:25 runpilot2-wrapper.sh
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 09:55:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:59 run_atlas
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:59 job.xml
[2025-10-13 09:55:10] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:59 start_atlas.sh
[2025-10-13 09:55:10] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:59 shared
[2025-10-13 09:55:10] -rw-r--r-- 2 boinc boinc    569682 Oct 13 07:59 input.tar.gz
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc      9723 Oct 13 07:59 init_data.xml
[2025-10-13 09:55:10] -rw-r--r-- 2 boinc boinc 221961169 Oct 13 07:59 EVNT.46676267._002021.pool.root.1
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:59 boinc_setup_complete
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:59 boinc_lockfile
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc      2550 Oct 13 07:59 pandaJob.out
[2025-10-13 09:55:10] -rw------- 1 boinc boinc    972497 Oct 13 07:59 agis_schedconf.cvmfs.json
[2025-10-13 09:55:10] -rw------- 1 boinc boinc   1560580 Oct 13 07:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 09:55:10] drwx------ 5 boinc boinc      4096 Oct 13 07:59 pilot3
[2025-10-13 09:55:10] -rw------- 1 boinc boinc 187797822 Oct 13 09:53 HITS.46676269._050200.pool.root.1
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc       529 Oct 13 09:53 boinc_task_state.xml
[2025-10-13 09:55:10] -rw------- 1 boinc boinc      1017 Oct 13 09:54 memory_monitor_summary.json
[2025-10-13 09:55:10] -rw------- 1 boinc boinc    307718 Oct 13 09:54 log.46676269._050200.job.log.tgz.1
[2025-10-13 09:55:10] -rw------- 1 boinc boinc      7734 Oct 13 09:54 heartbeat.json
[2025-10-13 09:55:10] -rw------- 1 boinc boinc        95 Oct 13 09:54 pilot_heartbeat.json
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc      8192 Oct 13 09:55 boinc_mmap_file
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc        27 Oct 13 09:55 wrapper_checkpoint.txt
[2025-10-13 09:55:10] -rw------- 1 boinc boinc      4902 Oct 13 09:55 pilotlog.txt
[2025-10-13 09:55:10] -rw------- 1 boinc boinc    999233 Oct 13 09:55 log.46676269._050200.job.log.1
[2025-10-13 09:55:10] -rw------- 1 boinc boinc       357 Oct 13 09:55 output.list
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc       620 Oct 13 09:55 runtime_log
[2025-10-13 09:55:10] -rw------- 1 boinc boinc   1331200 Oct 13 09:55 result.tar.gz
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc      8764 Oct 13 09:55 runtime_log.err
[2025-10-13 09:55:10] -rw------- 1 boinc boinc       643 Oct 13 09:55 CgcNDmwPfR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm33QMDmlvmzgm.diag
[2025-10-13 09:55:10] -rw-r--r-- 1 boinc boinc     20938 Oct 13 09:55 stderr.txt
[2025-10-13 09:55:10] HITS file was successfully produced:
[2025-10-13 09:55:10] -rw------- 1 boinc boinc 187797822 Oct 13 09:53 shared/HITS.pool.root.1
[2025-10-13 09:55:10]  *** Contents of shared directory: ***
[2025-10-13 09:55:10] total 402044
[2025-10-13 09:55:10] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:59 start_atlas.sh
[2025-10-13 09:55:10] -rw-r--r-- 2 boinc boinc    569682 Oct 13 07:59 input.tar.gz
[2025-10-13 09:55:10] -rw-r--r-- 2 boinc boinc 221961169 Oct 13 07:59 ATLAS.root_0
[2025-10-13 09:55:10] -rw------- 1 boinc boinc 187797822 Oct 13 09:53 HITS.pool.root.1
[2025-10-13 09:55:10] -rw------- 1 boinc boinc   1331200 Oct 13 09:55 result.tar.gz
09:55:11 (579863): run_atlas exited; CPU time 27299.745181
09:55:11 (579863): called boinc_finish(0)

</stderr_txt>
]]>

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