Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:59:11 (23728): wrapper (7.7.26015): starting
05:59:11 (23728): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 05:59:11] Arguments: --nthreads 12
[2025-10-13 05:59:11] Threads: 12
[2025-10-13 05:59:11] Checking for CVMFS
[2025-10-13 05:59:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:59:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:59:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:59:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:59:11] 2.11.2.0 2998 39885 92108 151656 1 57 15951032 20275200 1 130560 0 25377535 99.991 1301638 44946 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-13 05:59:11] CVMFS is ok
[2025-10-13 05:59:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:59:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:59:11] Further information can be found at the LHC@home message board.
[2025-10-13 05:59:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:59:11] Checking for apptainer binary...
[2025-10-13 05:59:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:59:11] Running /usr/bin/apptainer --version
[2025-10-13 05:59:11] apptainer version 1.3.2-1.el7
[2025-10-13 05:59:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:59:13] c-205-12.aglt2.org
[2025-10-13 05:59:13] apptainer works
[2025-10-13 05:59:13] Set ATHENA_PROC_NUMBER=12
[2025-10-13 05:59:13] Set ATHENA_CORE_NUMBER=12
[2025-10-13 05:59:13] Starting ATLAS job with PandaID=6842700353
[2025-10-13 05:59:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:11:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:11:52]  status=None
[2025-10-13 07:11:52]  status_code=0
[2025-10-13 07:11:52]  storage_token=
[2025-10-13 07:11:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6842700353/log.46676269._096465.job.log.tgz.1
[2025-10-13 07:11:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8a/76/log.46676269._096465.job.log.tgz.1
[2025-10-13 07:11:52]  workdir=None
[2025-10-13 07:11:52] ]
[2025-10-13 07:11:52] 2025-10-13 11:11:10,903 | INFO     | transferring file log.46676269._096465.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6842700353/log.46676269._096465.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-13 07:11:52] 2025-10-13 11:11:10,903 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6842700353/log.46676269._096465.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._096465.job
[2025-10-13 07:11:52] 2025-10-13 11:11:10,927 | INFO     | adding to output.list: log.46676269._096465.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8a/76/log.46676269._096465.job.log.tg
[2025-10-13 07:11:52] 2025-10-13 11:11:10,928 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 07:11:52] 2025-10-13 11:11:10,928 | INFO     | summary of transferred files:
[2025-10-13 07:11:52] 2025-10-13 11:11:10,928 | INFO     |  -- lfn=log.46676269._096465.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 07:11:52] 2025-10-13 11:11:10,928 | INFO     | stage-out finished correctly
[2025-10-13 07:11:52] 2025-10-13 11:11:10,949 | INFO     | time since job start (4303s) is within the limit (172800.0s)
[2025-10-13 07:11:52] 2025-10-13 11:11:12,073 | INFO     | PID=27400 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 07:11:52] 2025-10-13 11:11:12,124 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 07:11:52] 2025-10-13 11:11:13,057 | INFO     | monitor loop #324: job 0:6842700353 is in state 'finished'
[2025-10-13 07:11:52] 2025-10-13 11:11:13,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:11:52] 2025-10-13 11:11:13,073 | INFO     | time since job start (4306s) is within the limit (172800.0s)
[2025-10-13 07:11:52] 2025-10-13 11:11:14,083 | INFO     | job 6842700353 has state=finished
[2025-10-13 07:11:52] 2025-10-13 11:11:14,084 | INFO     | preparing for final server update for job 6842700353 in state='finished'
[2025-10-13 07:11:52] 2025-10-13 11:11:14,084 | INFO     | this job has now completed (state=finished)
[2025-10-13 07:11:52] 2025-10-13 11:11:14,084 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 07:11:52] 2025-10-13 11:11:14,084 | INFO     | log transfer has been attempted: DONE
[2025-10-13 07:11:52] 2025-10-13 11:11:14,085 | INFO     | job 6842700353 has finished - writing final server update
[2025-10-13 07:11:52] 2025-10-13 11:11:14,085 | INFO     | total number of processed events: 400 (read)
[2025-10-13 07:11:52] 2025-10-13 11:11:14,086 | INFO     | executing command: lscpu
[2025-10-13 07:11:52] 2025-10-13 11:11:14,112 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 07:11:52] 2025-10-13 11:11:15,079 | INFO     | time since job start (4308s) is within the limit (172800.0s)
[2025-10-13 07:11:52] 2025-10-13 11:11:15,560 | INFO     | monitor loop #325: job 0:6842700353 is in state 'finished'
[2025-10-13 07:11:52] 2025-10-13 11:11:15,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:11:52] 2025-10-13 11:11:17,085 | INFO     | time since job start (4310s) is within the limit (172800.0s)
[2025-10-13 07:11:52] 2025-10-13 11:11:18,063 | INFO     | monitor loop #326: job 0:6842700353 is in state 'finished'
[2025-10-13 07:11:52] 2025-10-13 11:11:18,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 07:11:52] 2025-10-13 11:11:19,090 | INFO     | time since job start (4312s) is within the limit (172800.0s)
[2025-10-13 07:11:52] 2025-10-13 11:11:19,839 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-13 07:11:52] 2025-10-13 11:11:19,842 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-13 07:11:52] 2025-10-13 11:11:19,845 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6842700353/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:11:52] 2025-10-13 11:11:19,845 | INFO     | extracted standard info from prmon json
[2025-10-13 07:11:52] 2025-10-13 11:11:19,845 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:11:52] 2025-10-13 11:11:19,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:11:52] 2025-10-13 11:11:19,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:11:52] 2025-10-13 11:11:19,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:11:52] 2025-10-13 11:11:19,848 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:11:52] 2025-10-13 11:11:19,848 | INFO     | sum of square deviations: 77515872.0
[2025-10-13 07:11:52] 2025-10-13 11:11:19,849 | INFO     | sum of deviations: -689592555.9999998
[2025-10-13 07:11:52] 2025-10-13 11:11:19,849 | INFO     | mean x: 1760351792.0
[2025-10-13 07:11:52] 2025-10-13 11:11:19,849 | INFO     | mean y: 2710379.285714286
[2025-10-13 07:11:52] 2025-10-13 11:11:19,849 | INFO     | -- intersect: 15663057871.789701
[2025-10-13 07:11:52] 2025-10-13 11:11:19,850 | INFO     | intersect: 15663057871.789701
[2025-10-13 07:11:52] 2025-10-13 11:11:19,850 | INFO     | chi2: 0.02724367264787991
[2025-10-13 07:11:52] 2025-10-13 11:11:19,850 | INFO     | -- intersect: 15663057871.789701
[2025-10-13 07:11:52] 2025-10-13 11:11:19,850 | INFO     | current memory leak: -8.90 B/s (using 63 data points, chi2=0.03)
[2025-10-13 07:11:52] 2025-10-13 11:11:19,850 | INFO     | could have reported an average CPU frequency of 2054 MHz (6 samples)
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | ..............................
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . Timing measurements:
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . get job = 0 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . initial setup = 2 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . payload setup = 7 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . stage-in = 0 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . payload execution = 4274 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,851 | INFO     | . stage-out = 0 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,852 | INFO     | . log creation = 0 s
[2025-10-13 07:11:52] 2025-10-13 11:11:19,852 | INFO     | ..............................
[2025-10-13 07:11:52] 2025-10-13 11:11:20,061 | INFO     | 
[2025-10-13 07:11:52] 2025-10-13 11:11:20,061 | INFO     | job summary report
[2025-10-13 07:11:52] 2025-10-13 11:11:20,061 | INFO     | --------------------------------------------------
[2025-10-13 07:11:52] 2025-10-13 11:11:20,062 | INFO     | PanDA job id: 6842700353
[2025-10-13 07:11:52] 2025-10-13 11:11:20,062 | INFO     | task id: 46676269
[2025-10-13 07:11:52] 2025-10-13 11:11:20,062 | INFO     | errors: (none)
[2025-10-13 07:11:52] 2025-10-13 11:11:20,062 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:11:52] 2025-10-13 11:11:20,062 | INFO     | pilot state: finished 
[2025-10-13 07:11:52] 2025-10-13 11:11:20,062 | INFO     | transexitcode: 0
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | exeerrorcode: 0
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | exeerrordiag: 
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | exitcode: 0
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | exitmsg: OK
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | cpuconsumptiontime: 45857 s
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | nevents: 400
[2025-10-13 07:11:52] 2025-10-13 11:11:20,063 | INFO     | neventsw: 0
[2025-10-13 07:11:52] 2025-10-13 11:11:20,064 | INFO     | pid: 1298
[2025-10-13 07:11:52] 2025-10-13 11:11:20,064 | INFO     | pgrp: 1298
[2025-10-13 07:11:52] 2025-10-13 11:11:20,064 | INFO     | corecount: 12
[2025-10-13 07:11:52] 2025-10-13 11:11:20,064 | INFO     | event service: False
[2025-10-13 07:11:52] 2025-10-13 11:11:20,064 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 11: 2349152, 4285: 2375172, 4287: 2384170, 4288: 2384354, 4296: 2384548}
[2025-10-13 07:11:52] 2025-10-13 11:11:20,064 | INFO     | --------------------------------------------------
[2025-10-13 07:11:52] 2025-10-13 11:11:20,065 | INFO     | 
[2025-10-13 07:11:52] 2025-10-13 11:11:20,065 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-13 07:11:52] 2025-10-13 11:11:20,093 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,093 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,093 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,096 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:11:52] 2025-10-13 11:11:20,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:11:52] 2025-10-13 11:11:20,096 | INFO     | job 6842700353 has completed (purged errors)
[2025-10-13 07:11:52] 2025-10-13 11:11:20,096 | INFO     | overall cleanup function is called
[2025-10-13 07:11:52] 2025-10-13 11:11:21,105 | INFO     | --- collectZombieJob: --- 10, [1298]
[2025-10-13 07:11:52] 2025-10-13 11:11:21,105 | INFO     | zombie collector waiting for pid 1298
[2025-10-13 07:11:52] 2025-10-13 11:11:21,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:11:52] 2025-10-13 11:11:21,105 | INFO     | collected zombie processes
[2025-10-13 07:11:52] 2025-10-13 11:11:21,105 | INFO     | will attempt to kill all subprocesses of pid=1298
[2025-10-13 07:11:52] 2025-10-13 11:11:21,199 | INFO     | process IDs to be killed: [1298] (in reverse order)
[2025-10-13 07:11:52] 2025-10-13 11:11:21,248 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:11:52] 2025-10-13 11:11:21,249 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:11:52] 2025-10-13 11:11:21,251 | INFO     | did not find any defunct processes belonging to 1298
[2025-10-13 07:11:52] 2025-10-13 11:11:21,254 | INFO     | did not find any defunct processes belonging to 1298
[2025-10-13 07:11:52] 2025-10-13 11:11:21,254 | INFO     | ready for new job
[2025-10-13 07:11:52] 2025-10-13 11:11:21,254 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:11:52] 2025-10-13 11:11:21,255 | INFO     | ***************************************
[2025-10-13 07:11:52] 2025-10-13 11:11:21,255 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:11:52] 2025-10-13 11:11:21,255 | INFO     | ***************************************
[2025-10-13 07:11:52] 2025-10-13 11:11:21,255 | INFO     | 
[2025-10-13 07:11:52] 2025-10-13 11:11:21,256 | INFO     | architecture information:
[2025-10-13 07:11:52] 2025-10-13 11:11:21,256 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:11:52] 2025-10-13 11:11:21,273 | INFO     | cat /etc/os-release:
[2025-10-13 07:11:52] NAME="CentOS Linux"
[2025-10-13 07:11:52] VERSION="7 (Core)"
[2025-10-13 07:11:52] ID="centos"
[2025-10-13 07:11:52] ID_LIKE="rhel fedora"
[2025-10-13 07:11:52] VERSION_ID="7"
[2025-10-13 07:11:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:11:52] ANSI_COLOR="0;31"
[2025-10-13 07:11:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:11:52] HOME_URL="https://www.centos.org/"
[2025-10-13 07:11:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:11:52] 
[2025-10-13 07:11:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:11:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:11:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:11:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:11:52] 
[2025-10-13 07:11:52] 2025-10-13 11:11:21,273 | INFO     | ***************************************
[2025-10-13 07:11:52] 2025-10-13 11:11:21,776 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-13 07:11:52] 2025-10-13 11:11:21,794 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-10-13 07:11:52] 2025-10-13 11:11:21,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:11:52] 2025-10-13 11:11:21,795 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:11:52] 2025-10-13 11:11:21,795 | INFO     | update_server=False
[2025-10-13 07:11:52] 2025-10-13 11:11:21,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:11:52] 2025-10-13 11:11:21,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:11:52] 2025-10-13 11:11:21,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:11:52] 2025-10-13 11:11:21,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:11:52] 2025-10-13 11:11:21,797 | INFO     | aborting loop
[2025-10-13 07:11:52] 2025-10-13 11:11:21,816 | INFO     | all data control threads have been joined
[2025-10-13 07:11:52] 2025-10-13 11:11:22,015 | INFO     | all payload control threads have been joined
[2025-10-13 07:11:52] 2025-10-13 11:11:22,665 | INFO     | all job control threads have been joined
[2025-10-13 07:11:52] 2025-10-13 11:11:22,713 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:11:52] 2025-10-13 11:11:22,801 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:22,802 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:22,802 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:22,822 | INFO     | [data] control thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:22,979 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:22,979 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:23,020 | INFO     | [payload] control thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:23,055 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:23,215 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:23,439 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:23,671 | INFO     | [job] control thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:23,801 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:24,070 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:24,102 | INFO     | [job] validate thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:26,719 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:31,976 | INFO     | job.realtimelogging is not enabled
[2025-10-13 07:11:52] 2025-10-13 11:11:32,981 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:11:52] 2025-10-13 11:11:34,113 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:11:52] 2025-10-13 11:11:35,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140146256238400)>', '<ExcThread(monitor, started 140145370060544)>']
[2025-10-13 07:11:52] 2025-10-13 11:11:40,954 | INFO     | all workflow threads have been joined
[2025-10-13 07:11:52] 2025-10-13 11:11:40,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:11:52] 2025-10-13 11:11:40,954 | INFO     | traces error code: 0
[2025-10-13 07:11:52] 2025-10-13 11:11:40,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:11:52] 2025-10-13 11:11:52,285 | INFO     | PID=27400 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 07:11:52] 2025-10-13 11:11:52,285 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:11:52] 2025-10-13 11:11:52,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:11:52] 2025-10-13 11:11:52,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:11:52] 2025-10-13 11:11:52,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:11:52] 2025-10-13 11:11:52,286 | INFO     | [monitor] control thread has ended
[2025-10-13 07:11:52] 2025-10-13 11:11:52,373 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:11:52] 2025-10-13 11:11:52,376 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:11:52] 2025-10-13 11:11:52,380 [wrapper] pilotpid: 27400
[2025-10-13 07:11:52] 2025-10-13 11:11:52,384 [wrapper] Pilot exit status: 0
[2025-10-13 07:11:52] 2025-10-13 11:11:52,399 [wrapper] pandaids: 6842700353
[2025-10-13 07:11:52] 2025-10-13 11:11:52,443 [wrapper] cleanup supervisor_pilot  4339 27401
[2025-10-13 07:11:52] 2025-10-13 11:11:52,447 [wrapper] Test setup, not cleaning
[2025-10-13 07:11:52] 2025-10-13 11:11:52,451 [wrapper] apfmon messages muted
[2025-10-13 07:11:52] 2025-10-13 11:11:52,455 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:11:52] 2025-10-13 11:11:52,459 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:11:52]  *** Error codes and diagnostics ***
[2025-10-13 07:11:52]     "exeErrorCode": 0,
[2025-10-13 07:11:52]     "exeErrorDiag": "",
[2025-10-13 07:11:52]     "pilotErrorCode": 0,
[2025-10-13 07:11:52]     "pilotErrorDiag": "",
[2025-10-13 07:11:52]  *** Listing of results directory ***
[2025-10-13 07:11:52] total 411360
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas    557409 Oct 13 03:15 pilot3.tar.gz
[2025-10-13 07:11:52] -rwx------ 1 boincer umatlas     36292 Oct 13 03:43 runpilot2-wrapper.sh
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas      5112 Oct 13 03:43 queuedata.json
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas       100 Oct 13 05:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:11:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 13 05:59 run_atlas
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas       105 Oct 13 05:59 job.xml
[2025-10-13 07:11:52] -rw-r--r-- 2 boincer umatlas 220769504 Oct 13 05:59 EVNT.46676267._001453.pool.root.1
[2025-10-13 07:11:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:59 start_atlas.sh
[2025-10-13 07:11:52] drwxrwx--x 2 boincer umatlas      4096 Oct 13 05:59 shared
[2025-10-13 07:11:52] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 05:59 input.tar.gz
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas         0 Oct 13 05:59 boinc_lockfile
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas      2549 Oct 13 05:59 pandaJob.out
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas    972849 Oct 13 05:59 agis_schedconf.cvmfs.json
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas   1560580 Oct 13 05:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:11:52] drwx------ 5 boincer umatlas      4096 Oct 13 05:59 pilot3
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas 194521150 Oct 13 07:10 HITS.46676269._096465.pool.root.1
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas       529 Oct 13 07:10 boinc_task_state.xml
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas      1049 Oct 13 07:11 memory_monitor_summary.json
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas    395907 Oct 13 07:11 log.46676269._096465.job.log.tgz.1
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas      7849 Oct 13 07:11 heartbeat.json
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas      5953 Oct 13 07:11 init_data.xml
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 13 07:11 boinc_mmap_file
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas        27 Oct 13 07:11 wrapper_checkpoint.txt
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas        95 Oct 13 07:11 pilot_heartbeat.json
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas       745 Oct 13 07:11 pilotlog.txt
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas    629117 Oct 13 07:11 log.46676269._096465.job.log.1
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas       357 Oct 13 07:11 output.list
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas       620 Oct 13 07:11 runtime_log
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas   1044480 Oct 13 07:11 result.tar.gz
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas      8705 Oct 13 07:11 runtime_log.err
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas       659 Oct 13 07:11 4UPODmyOSS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6imNDmbOwc0m.diag
[2025-10-13 07:11:52] -rw-r--r-- 1 boincer umatlas     22074 Oct 13 07:11 stderr.txt
[2025-10-13 07:11:52] HITS file was successfully produced:
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas 194521150 Oct 13 07:10 shared/HITS.pool.root.1
[2025-10-13 07:11:52]  *** Contents of shared directory: ***
[2025-10-13 07:11:52] total 407160
[2025-10-13 07:11:52] -rw-r--r-- 2 boincer umatlas 220769504 Oct 13 05:59 ATLAS.root_0
[2025-10-13 07:11:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 13 05:59 start_atlas.sh
[2025-10-13 07:11:52] -rw-r--r-- 2 boincer umatlas    569679 Oct 13 05:59 input.tar.gz
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas 194521150 Oct 13 07:10 HITS.pool.root.1
[2025-10-13 07:11:52] -rw------- 1 boincer umatlas   1044480 Oct 13 07:11 result.tar.gz
07:11:54 (23728): run_atlas exited; CPU time 45864.122736
07:11:54 (23728): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN